BLASTX nr result
ID: Rheum21_contig00029142
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029142
(323 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 85 1e-14
ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614... 84 3e-14
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 80 4e-13
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 79 8e-13
ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica] gi|... 75 7e-12
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 75 9e-12
ref|XP_002314708.1| predicted protein [Populus trichocarpa] 75 1e-11
ref|XP_004301685.1| PREDICTED: putative ribonuclease H protein A... 74 2e-11
ref|XP_002309989.1| predicted protein [Populus trichocarpa] 74 2e-11
ref|XP_006490009.1| PREDICTED: putative ribonuclease H protein A... 74 3e-11
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 72 6e-11
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 72 6e-11
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 72 6e-11
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 72 6e-11
ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein A... 72 8e-11
gb|EMJ21146.1| hypothetical protein PRUPE_ppb019489mg [Prunus pe... 71 1e-10
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 71 2e-10
gb|EMJ13927.1| hypothetical protein PRUPE_ppa019009mg, partial [... 71 2e-10
gb|EMJ10020.1| hypothetical protein PRUPE_ppa025050mg [Prunus pe... 71 2e-10
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 70 2e-10
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 84.7 bits (208), Expect = 1e-14
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG C ELWG L AWD+GFR+V + DS L V + + H L L
Sbjct: 841 GFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFL 900
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANIL-------SLFFSIRFTCVSLPPEGSLL 320
V C+GF R W++++ H+++EAN L + F + F C + PE LL
Sbjct: 901 VRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFFLPLGFHCFEICPEDVLL 953
>ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614777 [Citrus sinensis]
Length = 320
Score = 83.6 bits (205), Expect = 3e-14
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
G+ N+G+C+V STELWG+ L AW GFR+VY + DS + LI P + F+L
Sbjct: 191 GYSANLGVCSVTSTELWGLFHGLSIAWQYGFRRVYVEVDSMCVMRLISNPNPPINEHFTL 250
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILSLF-------FSIRFTCVSLPPEGSL 317
+++ + LRR W+ ++ HI++EAN ++ F FS+ C P L
Sbjct: 251 IQEIQALLRRDWLTKVEHIYREANEVADFLASYNFSFSLGLHCFQFNPPNML 302
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 79.7 bits (195), Expect = 4e-13
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG C ELWG L AWD+GFR+V D D L V + + H L L
Sbjct: 1102 GFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFL 1161
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANIL-------SLFFSIRFTCVSLPPEGSLLL 323
V C+GF R W++++ H+++EAN L + + C PEG LL
Sbjct: 1162 VRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLL 1215
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 78.6 bits (192), Expect = 8e-13
Identities = 34/87 (39%), Positives = 53/87 (60%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ELWG+ L AW+RG+R+V + DS L V + + H L L
Sbjct: 547 GFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFL 606
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C GF+ + W++++ H+++EAN L+
Sbjct: 607 VRLCHGFISKDWIVRITHVYREANRLA 633
>ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica]
gi|401661941|emb|CBX33402.1| rnaseH (mitochondrion)
[Malus domestica]
Length = 153
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF N+G +++ ELWG+ LR AW RGFR V + DS VTL+ + + H L +L
Sbjct: 24 GFTANLGKGKIIAAELWGLFFGLRLAWMRGFRSVEVEVDSATVVTLVNQQDNSLHPLHTL 83
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANI-------LSLFFSIRFTCVSLPPEGSL 317
+ C+ +L+ W +L HI++E N + L + + + PP G +
Sbjct: 84 IRGCQAYLKMDWHCKLSHIYREKNFSADYLASIGLTYDLGYFESQSPPPGCI 135
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/87 (39%), Positives = 49/87 (56%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG C ELWG+ L AWDRG ++ + DS + V + + H L L
Sbjct: 104 GFALNIGRCLAPLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFL 163
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C GFL R W++++ H+++EAN L+
Sbjct: 164 VRMCHGFLSRDWIVRIGHVYREANRLA 190
>ref|XP_002314708.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 74.7 bits (182), Expect = 1e-11
Identities = 33/87 (37%), Positives = 53/87 (60%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ++ ELW + L+ AWDRGFRKV ++DS + V LI +++
Sbjct: 115 GFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNI 174
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
+ Q +G L R W + H+++EAN ++
Sbjct: 175 IMQIKGMLGRNWEVTTYHVYREANCVA 201
>ref|XP_004301685.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 149
Score = 74.3 bits (181), Expect = 2e-11
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF +G+ VL ELWG+L + AW G + + DS +AV L+ +D H L+SL
Sbjct: 18 GFSAKLGIGQVLEAELWGLLKGMEMAWQHGCNSLEVEVDSLVAVKLVLSVIDHLHPLYSL 77
Query: 183 VEQCRGFLRRKWMIQLCHIFKEAN 254
+ C+ FL R W + L H+++E+N
Sbjct: 78 IANCQEFLSRNWNVSLIHVYRESN 101
>ref|XP_002309989.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/87 (37%), Positives = 53/87 (60%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ++ ELW + L+ AWDRGFRKV ++DS + V LI +++
Sbjct: 115 GFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNI 174
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
+ Q +G L R W + H+++EAN ++
Sbjct: 175 IMQIKGMLGRDWEVTTYHVYREANCVA 201
>ref|XP_006490009.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 171
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/91 (37%), Positives = 55/91 (60%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF N+G+C+VLS ELWG+L L+ AWD GFR + D+ V L+ ++ P + L
Sbjct: 42 GFTVNLGMCSVLSAELWGLLHGLKVAWDYGFRHLQVGVDNKNVVLLLERAHPPANENAIL 101
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILSLFFS 275
V+ R L R W++ + H++++AN + F +
Sbjct: 102 VKTIRELLARDWIVHMEHVYRKANSAADFLA 132
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG C+ ELWG+ L +AW++ +V + DS + V + + H L L
Sbjct: 600 GFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFL 659
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C GFL++ W++++ H+++EAN L+
Sbjct: 660 VRLCHGFLQKDWLVRIVHVYREANRLA 686
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 72.4 bits (176), Expect = 6e-11
Identities = 32/87 (36%), Positives = 49/87 (56%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ELWG L AW+RG ++ + DS + V + +D H L L
Sbjct: 124 GFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 183
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C G L + W +++ H+++EAN L+
Sbjct: 184 VRLCHGLLSKDWSVRISHVYREANRLA 210
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 72.4 bits (176), Expect = 6e-11
Identities = 32/87 (36%), Positives = 49/87 (56%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ELWG L AW+RG ++ + DS + V + +D H L L
Sbjct: 143 GFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 202
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C G L + W +++ H+++EAN L+
Sbjct: 203 VRLCHGLLSKDWSVRISHVYREANRLA 229
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG C+ ELWG+ L +AW++ +V + DS + V + + H L L
Sbjct: 491 GFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFL 550
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
V C GFL++ W++++ H+++EAN L+
Sbjct: 551 VRLCHGFLQKDWLVRIVHVYREANRLA 577
>ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 72.0 bits (175), Expect = 8e-11
Identities = 33/91 (36%), Positives = 53/91 (58%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
G+ N+G C+V S ELWG+ L AW G+R+V + DS + L+ S + SL
Sbjct: 117 GYCANLGFCSVTSAELWGLFHGLSIAWLYGYRRVIVEVDSKCILQLVSSSNPTINEHLSL 176
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILSLFFS 275
++ + + RKW+IQ+ HI++EAN + F +
Sbjct: 177 IKAIQELIGRKWLIQMNHIYREANAAADFLA 207
>gb|EMJ21146.1| hypothetical protein PRUPE_ppb019489mg [Prunus persica]
Length = 516
Score = 71.2 bits (173), Expect = 1e-10
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF N+G+ +VL ELW I G L AW+ FR V ++D +AV L+ S H LFSL
Sbjct: 387 GFFVNLGVGSVLEAELWSIFGGLHLAWESSFRVVEVESDFSVAVALLSSSTISTHPLFSL 446
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANI 257
+ C+ ++ W + HIF+E N+
Sbjct: 447 IRCCKLKVQAGWRCSVKHIFREQNV 471
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 70.9 bits (172), Expect = 2e-10
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
G+ N+G C+V S ELWG+ L AW G+R+V + DS + L+ S + SL
Sbjct: 639 GYCANLGFCSVTSAELWGLFHGLSIAWLHGYRRVIVEVDSRCILQLVSNSNPTINEHLSL 698
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILSLFFS 275
+ + + R W+IQ+ HI++EAN S F +
Sbjct: 699 ITAIQELIGRDWLIQMNHIYREANAASDFLA 729
>gb|EMJ13927.1| hypothetical protein PRUPE_ppa019009mg, partial [Prunus persica]
Length = 259
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/86 (36%), Positives = 53/86 (61%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF N+G+ VL ELWGI L+ AWD G V ++DS AV L+ K+++ H L ++
Sbjct: 72 GFAVNLGVGQVLEAELWGIYLGLKIAWDIGCSAVVLESDSTTAVHLLHKNVEDLHPLVAM 131
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANIL 260
+ C+ ++ + W+ + H+++E N+L
Sbjct: 132 LWGCQDYINKNWVCSIHHVYRECNML 157
>gb|EMJ10020.1| hypothetical protein PRUPE_ppa025050mg [Prunus persica]
Length = 241
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+ + ELW +L L+ AW+RG R + + D V+L+ K D H L L
Sbjct: 114 GFSVNIGIGNIAKGELWSLLKGLQMAWNRGIRSLDVECDFLYVVSLMAKVSDQSHPLLCL 173
Query: 183 VEQCRGFLRRKWMIQLCHIFKEAN 254
+E C+ L R W ++ H+++E N
Sbjct: 174 IEDCKSLLNRDWSCKISHVYREQN 197
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 70.5 bits (171), Expect = 2e-10
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +3
Query: 3 GFLHNIGLCTVLSTELWGILGSLRYAWDRGFRKVYFDTDS*LAVTLIGKSLDPCHSLFSL 182
GF NIG+C+ ELWG+ L AW RG R+V + DS + V + + H L L
Sbjct: 192 GFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFL 251
Query: 183 VEQCRGFLRRKWMIQLCHIFKEANILS 263
+ C FL + W++++ H+++EAN L+
Sbjct: 252 LRLCYDFLSKGWIVRISHVYREANRLA 278