BLASTX nr result
ID: Rheum21_contig00029095
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029095
(803 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79665.1|AC022314_6 F9C16.13 [Arabidopsis thaliana] 77 9e-12
gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana] 76 2e-11
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 69 2e-09
gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata] 69 2e-09
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 69 3e-09
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 68 4e-09
gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana] 67 6e-09
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 66 1e-08
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 66 1e-08
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 65 3e-08
gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arab... 65 3e-08
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 65 4e-08
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 64 8e-08
gb|ABK28199.1| unknown [Arabidopsis thaliana] 63 1e-07
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 63 1e-07
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 63 1e-07
gb|EMJ08246.1| hypothetical protein PRUPE_ppb025146mg, partial [... 62 2e-07
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 62 2e-07
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 62 2e-07
gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana] 62 3e-07
>gb|AAF79665.1|AC022314_6 F9C16.13 [Arabidopsis thaliana]
Length = 1172
Score = 76.6 bits (187), Expect = 9e-12
Identities = 35/87 (40%), Positives = 53/87 (60%)
Frame = +3
Query: 432 KKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEP 611
K ++ HPLS L+ C GF+ +D +++ H+YREAN ++D LA + + P+G+HV
Sbjct: 269 KTGVSERHPLSFLVRLCHGFLSKDWIVRISHVYREANRLADGLANYAFLLPIGIHVFVSV 328
Query: 612 PCIISPLFFDDVRGRAILHLITT*PIS 692
P ++ PLF DDV G A L T +S
Sbjct: 329 PDVVEPLFSDDVIGSARLRRTPTNSLS 355
>gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana]
Length = 196
Score = 75.9 bits (185), Expect = 2e-11
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C GF+ +D +++ H+YREAN ++D LA + + P+G+HV P ++ PL
Sbjct: 119 HPLSFLVRLCHGFLLKDWIVRISHVYREANRLADGLANYAFLLPIGIHVFVSVPDVVEPL 178
Query: 633 FFDDVRGRAILHLI 674
F DDV G A L +
Sbjct: 179 FSDDVIGSARLRRV 192
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 68.9 bits (167), Expect = 2e-09
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C GF+ RD +++ H+YREAN ++D LA + + PLG H PP + +
Sbjct: 158 HPLSFLVRMCHGFLSRDWIVRIGHVYREANRLADGLANYAFDLPLGYHAFASPPNSLDSI 217
Query: 633 FFDDVRGRAILHLI 674
DD G ++ L+
Sbjct: 218 LRDDELGISVPRLV 231
>gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 68.9 bits (167), Expect = 2e-09
Identities = 31/74 (41%), Positives = 43/74 (58%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C GFI RD +++ H+YR+AN +D LA + +S PLG H P ++
Sbjct: 97 HPLSILVRLCYGFIARDWIVRVTHVYRKANRFADGLANYVFSLPLGFHDFVSVPVVVDSF 156
Query: 633 FFDDVRGRAILHLI 674
DDV G +L I
Sbjct: 157 LRDDVVGTTLLQRI 170
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 68.6 bits (166), Expect = 3e-09
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Frame = +3
Query: 441 MTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCI 620
+++ HPLS L+ CQGF RD +++ H+YREAN ++D LA + ++ PLGLH D P
Sbjct: 1152 VSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEG 1211
Query: 621 ISPLFFDDVRG----RAIL 665
+ L DV G RA+L
Sbjct: 1212 VRLLLLADVNGTEFPRAVL 1230
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 67.8 bits (164), Expect = 4e-09
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C F+ + +++ H+YREAN ++D LA + +S LGLH+L+ P ++S +
Sbjct: 246 HPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSI 305
Query: 633 FFDDVRG 653
DDV G
Sbjct: 306 LLDDVAG 312
>gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana]
Length = 117
Score = 67.4 bits (163), Expect = 6e-09
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +3
Query: 432 KKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDE- 608
K ++ HPLS L+ C G + +D +++ H+YREAN ++D LA + +S PLGLH+ D
Sbjct: 35 KTGISETHPLSFLVRLCYGLLSKDWLVRISHVYREANQLADGLANYAFSLPLGLHLFDSC 94
Query: 609 PPCIISPLFFDDVRGRA 659
P C++ L DD RG A
Sbjct: 95 PDCMLHCLAEDD-RGAA 110
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 66.2 bits (160), Expect = 1e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C G + +D ++ H+YREAN ++D LA + + PLG H+ + P I+ +
Sbjct: 178 HPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSI 237
Query: 633 FFDDVRGRA 659
DDV G A
Sbjct: 238 VHDDVAGSA 246
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C G + +D ++ H+YREAN ++D LA + + PLG H+ + P I+ +
Sbjct: 197 HPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSI 256
Query: 633 FFDDVRGRA 659
DDV G A
Sbjct: 257 VHDDVAGSA 265
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 65.1 bits (157), Expect = 3e-08
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPL+ L+ C GFI +D +++ H+YREAN ++D LA + ++ P G +LD P +S +
Sbjct: 601 HPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSI 660
Query: 633 FFDDVRG 653
+DV G
Sbjct: 661 LLEDVMG 667
>gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arabidopsis thaliana]
Length = 256
Score = 65.1 bits (157), Expect = 3e-08
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L C GFI +D +++ H+YREAN ++D LA + ++ PLG H P ++ +
Sbjct: 100 HPLSFLARLCYGFISKDWIVRISHVYREANRLADGLANYAFTLPLGFHFFHSSPDVVDSV 159
Query: 633 FFDDVRGRAILHLI 674
+D G + L+
Sbjct: 160 RLEDTSGTSCPRLV 173
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 64.7 bits (156), Expect = 4e-08
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = +3
Query: 420 LYLNKKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHV 599
L N P + H SLI+ Q I RD +IQ HIYREAN+ SD LAT++ +FP+GLH
Sbjct: 684 LVSNSNPTINEH--LSLITAIQELIGRDWLIQMNHIYREANAASDFLATYSLAFPVGLHY 741
Query: 600 LDEPPCIISPLFFDDVRGRAILHLI 674
PP + + +DV G A L+
Sbjct: 742 FQSPPLNLLNILNNDVSGVAHSRLV 766
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 63.5 bits (153), Expect = 8e-08
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = +3
Query: 432 KKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEP 611
K + HPLS L+ C FI RD ++ H+YREAN ++D LA + +S PLG H L
Sbjct: 232 KIXINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLV 291
Query: 612 PCIISPLFFDDVRGRAI 662
P + + DD G +
Sbjct: 292 PDSLRFILLDDTSGATV 308
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 63.2 bits (152), Expect = 1e-07
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C FI RD ++ H+YREAN ++D LA + +S PLG H L P + +
Sbjct: 239 HPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFI 298
Query: 633 FFDDVRGRAI 662
DD G +
Sbjct: 299 LLDDTSGATV 308
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 63.2 bits (152), Expect = 1e-07
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C FI RD ++ H+YREAN ++D LA + +S PLG H L P + +
Sbjct: 239 HPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFI 298
Query: 633 FFDDVRGRAI 662
DD G +
Sbjct: 299 LLDDTSGATV 308
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 62.8 bits (151), Expect = 1e-07
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
HPLS L+ C GFI RD +++ H+YREAN ++D LA + S PLG H D I+ +
Sbjct: 719 HPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYASSLPLGFHSFDVCLKIVYSV 778
Query: 633 FFDDVRG 653
+D G
Sbjct: 779 LVEDKNG 785
>gb|EMJ08246.1| hypothetical protein PRUPE_ppb025146mg, partial [Prunus persica]
Length = 104
Score = 62.0 bits (149), Expect = 2e-07
Identities = 32/86 (37%), Positives = 46/86 (53%)
Frame = +3
Query: 402 CCSYYVLYLNKKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSF 581
C S V+ L P +H HPL S+ + C I ++ +HI+RE N +D LA ++
Sbjct: 12 CDSKSVVDLLLNPPSHTHPLFSITNCCYLLIQKEWCCSVKHIFREQNFAADSLAAMSHDL 71
Query: 582 PLGLHVLDEPPCIISPLFFDDVRGRA 659
PLGLH+LD P ++ L D R A
Sbjct: 72 PLGLHILDSAPGVVVELLAADARSLA 97
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 62.0 bits (149), Expect = 2e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 432 KKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEP 611
K ++ HPLS L+ C GF+ +D +++ H+YREAN ++D LA + +S LG H D
Sbjct: 647 KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLV 706
Query: 612 PCIISPLFFDDVRG 653
P +S L +D G
Sbjct: 707 PDAMSSLLREDTLG 720
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 62.0 bits (149), Expect = 2e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 432 KKPMTHFHPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEP 611
K ++ HPLS L+ C GF+ +D +++ H+YREAN ++D LA + +S LG H D
Sbjct: 538 KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLV 597
Query: 612 PCIISPLFFDDVRG 653
P +S L +D G
Sbjct: 598 PDAMSSLLREDTLG 611
>gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana]
Length = 803
Score = 61.6 bits (148), Expect = 3e-07
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = +3
Query: 453 HPLSSLISRCQGFICRD*VIQFRHIYREANSVSDRLATFTYSFPLGLHVLDEPPCIISPL 632
+PLS L+ C GFI RD +++ H+YREAN ++D LA + +S PLG H + P + +
Sbjct: 31 NPLSFLVRLCHGFILRDWIVRIVHVYREANRLADGLANYVFSLPLGFHSFECVPEHVRDI 90
Query: 633 FFDDVRG 653
+D G
Sbjct: 91 LLEDTGG 97