BLASTX nr result
ID: Rheum21_contig00028938
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028938
(269 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218... 110 2e-22
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 110 2e-22
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 105 8e-21
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 105 8e-21
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 105 8e-21
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 100 3e-19
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 100 3e-19
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 96 6e-18
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 93 3e-17
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 92 7e-17
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 92 7e-17
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 91 2e-16
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 89 5e-16
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 89 6e-16
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 89 8e-16
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr... 89 8e-16
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 88 1e-15
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 87 3e-15
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 86 4e-15
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 86 4e-15
>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1|
Protein DCL [Medicago truncatula]
Length = 481
Score = 110 bits (275), Expect = 2e-22
Identities = 51/87 (58%), Positives = 63/87 (72%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVSKH+NFQDSRC+YVV DG+K+DFSYRKCLENLV+KKYP+ A SF KY+R+P+
Sbjct: 352 VMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRV 411
Query: 183 DREQEPNNGGGREQEPNNGGGHEQEPN 263
R+Q PN G + PN G PN
Sbjct: 412 KRDQTPNPAGEQTAAPNPAGEQTAAPN 438
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 110 bits (275), Expect = 2e-22
Identities = 51/87 (58%), Positives = 63/87 (72%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVSKH+NFQDSRC+YVV DG+K+DFSYRKCLENLV+KKYP+ A SF KY+R+P+
Sbjct: 1903 VMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRV 1962
Query: 183 DREQEPNNGGGREQEPNNGGGHEQEPN 263
R+Q PN G + PN G PN
Sbjct: 1963 KRDQTPNPAGEQTAAPNPAGEQTAAPN 1989
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 105 bits (261), Expect = 8e-21
Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVS+H++F +SRC YVVS DG K+DFSYRKCLEN +K+KYPD A +F KY+RRPR G
Sbjct: 1802 VMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGG 1861
Query: 183 DREQE--PNNGGGREQE--PNNGGGHEQE 257
+RE+ P +GG REQ P G ++
Sbjct: 1862 NRERSVIPEDGGNREQSVVPEETGSENRQ 1890
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 105 bits (261), Expect = 8e-21
Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVS+H++F +SRC YVVS DG K+DFSYRKCLEN +K+KYPD A +F KY+RRPR G
Sbjct: 1742 VMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGG 1801
Query: 183 DREQE--PNNGGGREQE--PNNGGGHEQE 257
+RE+ P +GG REQ P G ++
Sbjct: 1802 NRERSVIPEDGGNREQSVVPEETGSENRQ 1830
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 105 bits (261), Expect = 8e-21
Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVS+H++F +SRC YVVS DG K+DFSYRKCLEN +K+KYPD A +F KY+RRPR G
Sbjct: 993 VMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGG 1052
Query: 183 DREQE--PNNGGGREQE--PNNGGGHEQE 257
+RE+ P +GG REQ P G ++
Sbjct: 1053 NRERSVIPEDGGNREQSVVPEETGSENRQ 1081
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 100 bits (248), Expect = 3e-19
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVSKH+NF DSRC YVVS DGRKQDFSYRKCL+N +K KYPD A F +KY+R+PR G
Sbjct: 1712 VMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPRFGG 1771
Query: 183 DREQE--PNNGGGREQE 227
RE+ P N G ++
Sbjct: 1772 FRERSVAPENTEGENRK 1788
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 99.8 bits (247), Expect = 3e-19
Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 6/95 (6%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MVS+H+NFQ+SRC YVV DG+K+DFSYRKCLE+ V+KKY D A SF KY+R+PR
Sbjct: 2138 VMVSRHSNFQESRCFYVVLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPR--P 2195
Query: 183 DREQEPNNGG------GREQEPNNGGGHEQEPNNG 269
R+Q N+GG G EQ GG PN G
Sbjct: 2196 KRDQIANSGGEQTANPGGEQTATPGGEQTTTPNGG 2230
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 95.5 bits (236), Expect = 6e-18
Identities = 40/66 (60%), Positives = 54/66 (81%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MV+KH++FQDSRC YVV DGR++DFSYRKCL+N ++KKYP+ A SFF KY+R+PRN
Sbjct: 1957 VMVNKHSSFQDSRCFYVVLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRA 2016
Query: 183 DREQEP 200
++ P
Sbjct: 2017 EQTATP 2022
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 93.2 bits (230), Expect = 3e-17
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+M+S+H++FQDSRC+YVVS DGRK+DFSYRKCL NL+K ++PD A F KY+R+P+ G
Sbjct: 1956 LMISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPGG 2015
Query: 183 --DREQEPNNGGGREQEP 230
DR P Q P
Sbjct: 2016 NQDRISTPEPAWNNTQAP 2033
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 92.0 bits (227), Expect = 7e-17
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +3
Query: 6 MVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVGD 185
MVS+H++FQ+SRC YVV+ DG K+DFSYRKCL+N +K KYPD A F +KY+R+PR +
Sbjct: 1868 MVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNRN 1927
Query: 186 REQEPNNGGGREQEPNNGGGHEQEP 260
R++ P E+ N G E P
Sbjct: 1928 RDRNP----ASEENENKSIGGELTP 1948
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 92.0 bits (227), Expect = 7e-17
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +3
Query: 6 MVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVGD 185
MVS+H++FQ+SRC YVV+ DG K+DFSYRKCL+N +K KYPD A F +KY+R+PR +
Sbjct: 1928 MVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNRN 1987
Query: 186 REQEPNNGGGREQEPNNGGGHEQEP 260
R++ P E+ N G E P
Sbjct: 1988 RDRNP----ASEENENKSIGGELTP 2008
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MV+KH++FQ+SRC YVV DG +DFSYRKCL N + KKYPD A SF KY+R+PR G
Sbjct: 1980 VMVNKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARG 2039
Query: 183 DREQEPNNGGGREQEPNNG 239
D+ P GR++ G
Sbjct: 2040 DQTATP----GRDEAATPG 2054
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 89.4 bits (220), Expect = 5e-16
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+MV+KH++FQ+SRC YVV DG+ +DFSYRKCL N + KKYPD A SF KY+R+PR G
Sbjct: 1937 VMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARG 1996
Query: 183 DREQEPNNGGGREQEP 230
D Q GG + P
Sbjct: 1997 D--QTATLGGDQTATP 2010
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 89.0 bits (219), Expect = 6e-16
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
+ VS+H+NFQ+SRC Y+VS DG KQDFSYRKCLEN +K KYPD A F +KY+ R G
Sbjct: 1846 VTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFARR---G 1902
Query: 183 DREQEPNNGGGREQE 227
+R++ P G E++
Sbjct: 1903 NRQRTPAPEGTEEEK 1917
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 88.6 bits (218), Expect = 8e-16
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = +3
Query: 9 VSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVGDR 188
V KH +FQDSRC++VVS DG +QDFSYRKCLE+ ++ KYPD F KY+RRPR+ G+R
Sbjct: 1790 VDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSGGNR 1849
Query: 189 E 191
E
Sbjct: 1850 E 1850
>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
gi|557112419|gb|ESQ52703.1| hypothetical protein
EUTSA_v10016128mg [Eutrema salsugineum]
Length = 1874
Score = 88.6 bits (218), Expect = 8e-16
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
I V KHT F +SRC +VVS DG KQDFSYRKC+ N V +K+P+ A F KY++R R+
Sbjct: 1756 ITVDKHTTFTESRCFFVVSTDGAKQDFSYRKCIINYVMEKFPNLAEEFIGKYYKR-RDDA 1814
Query: 183 DREQ----------EPNNGGGREQEPNNGGGHEQEP 260
+RE+ +PN GG + +P GG + +P
Sbjct: 1815 NRERSKQDATQPQSQPNGNGGEDSQPIGDGGEDSQP 1850
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 88.2 bits (217), Expect = 1e-15
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRP 170
I VSKHTNFQD+RC YVVS DG KQDFS RKCLEN V+ KYPD+A +F KY+++P
Sbjct: 1555 ITVSKHTNFQDTRCFYVVSTDGAKQDFSTRKCLENFVRSKYPDKAETFNEKYFKKP 1610
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 86.7 bits (213), Expect = 3e-15
Identities = 37/61 (60%), Positives = 48/61 (78%)
Frame = +3
Query: 9 VSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVGDR 188
V KH +FQDSRC++VVS DG +QDFSYRKCLE+ ++ KYP+ F KY+RRPR+ G+R
Sbjct: 1792 VDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRSGGNR 1851
Query: 189 E 191
E
Sbjct: 1852 E 1852
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 86.3 bits (212), Expect = 4e-15
Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
I V KHT F DSRC +VVS DG KQDFSYRK L N + KKYPD+A F KY+ +PR G
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
Query: 183 DREQEPNN----GGGREQEPN----NGG 242
+R++ + G + Q PN NGG
Sbjct: 1855 NRDRNNQDATPPGEEQSQPPNQSIGNGG 1882
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 86.3 bits (212), Expect = 4e-15
Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Frame = +3
Query: 3 IMVSKHTNFQDSRCMYVVSVDGRKQDFSYRKCLENLVKKKYPDQAGSFFSKYWRRPRNVG 182
I V KHT F DSRC +VVS DG KQDFSYRK L N + KKYPD+A F KY+ +PR G
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG 1854
Query: 183 DREQEPNN----GGGREQEPN----NGG 242
+R++ + G + Q PN NGG
Sbjct: 1855 NRDRNNQDATPPGEEQSQPPNQSIGNGG 1882