BLASTX nr result
ID: Rheum21_contig00028711
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028711
(392 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 76 5e-12
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 75 7e-12
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 74 2e-11
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 73 4e-11
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 73 4e-11
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 70 2e-10
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 70 3e-10
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 69 6e-10
gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arab... 69 6e-10
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 69 6e-10
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 67 2e-09
gb|ABK28199.1| unknown [Arabidopsis thaliana] 67 2e-09
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 67 2e-09
gb|EMJ15395.1| hypothetical protein PRUPE_ppa021592mg [Prunus pe... 66 5e-09
gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana] 66 5e-09
ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614... 64 2e-08
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 64 2e-08
gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata] 63 4e-08
ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein A... 63 5e-08
gb|EMJ25981.1| hypothetical protein PRUPE_ppa023938mg, partial [... 62 8e-08
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 75.9 bits (185), Expect = 5e-12
Identities = 41/104 (39%), Positives = 56/104 (53%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
WDRG R+ LE DS++ V L + HPL LV GFL RD +++ H++REAN +
Sbjct: 130 WDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYREANRL 189
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AF LG+H D G + PRL+ +
Sbjct: 190 ADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRLVRM 233
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 75.5 bits (184), Expect = 7e-12
Identities = 41/104 (39%), Positives = 56/104 (53%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
WD+G+ RV L DS+L V L + + HPL LV QGF RD +++ H++REAN +
Sbjct: 867 WDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRL 926
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AF LGFH D G + PR + +
Sbjct: 927 ADGLANYAFFLPLGFHCFEICPEDVLLFLVEDANGTSFPRAVLM 970
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 74.3 bits (181), Expect = 2e-11
Identities = 41/104 (39%), Positives = 55/104 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
WD+G+ RV L+ D +L V L + HPL LV QGF RD +++ H++REAN +
Sbjct: 1128 WDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRL 1187
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AF+ LG H AD G PR + L
Sbjct: 1188 ADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPRAVLL 1231
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 72.8 bits (177), Expect = 4e-11
Identities = 41/104 (39%), Positives = 56/104 (53%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W++ RV LE DS++ V L + HPL LV GFL++D +++ H++REAN +
Sbjct: 626 WEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRL 685
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T PR + L
Sbjct: 686 ADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVRL 729
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 72.8 bits (177), Expect = 4e-11
Identities = 41/104 (39%), Positives = 56/104 (53%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W++ RV LE DS++ V L + HPL LV GFL++D +++ H++REAN +
Sbjct: 517 WEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRL 576
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T PR + L
Sbjct: 577 ADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVRL 620
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 70.5 bits (171), Expect = 2e-10
Identities = 41/104 (39%), Positives = 53/104 (50%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W + RV LE DS+L V L + HPL LV G L +D +++ H++REAN +
Sbjct: 700 WTKALTRVELEVDSELVVGFLKTGIGDQHPLSFLVRLCHGLLSKDWIVRITHVYREANRL 759
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T PR + L
Sbjct: 760 ADGLANYAFSLPLGFHSLIDVPDDLEVILHEDSLGSTRPRRVRL 803
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/104 (37%), Positives = 54/104 (51%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+RG+ RV LE DS L V L + HPL LV GF+ +D +++ H++REAN +
Sbjct: 573 WERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRL 632
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AF+ GF D G + PR + L
Sbjct: 633 ADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMGTSFPRHVRL 676
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 68.9 bits (167), Expect = 6e-10
Identities = 37/100 (37%), Positives = 52/100 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+RG ++ +E DS++ V L +D HPL LV G L +D +++ H++REAN +
Sbjct: 150 WERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRL 209
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPR 91
ADGLA+ AF LGFH D G PR
Sbjct: 210 ADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 249
>gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arabidopsis thaliana]
Length = 256
Score = 68.9 bits (167), Expect = 6e-10
Identities = 37/104 (35%), Positives = 55/104 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W++ RV LE DS++ V L + HPL L GF+ +D +++ H++REAN +
Sbjct: 72 WEKWVTRVELEVDSEIVVGFLKTGIGDSHPLSFLARLCYGFISKDWIVRISHVYREANRL 131
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AF+ LGFH D G + PRL+ +
Sbjct: 132 ADGLANYAFTLPLGFHFFHSSPDVVDSVRLEDTSGTSCPRLVRM 175
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 68.9 bits (167), Expect = 6e-10
Identities = 37/100 (37%), Positives = 52/100 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+RG ++ +E DS++ V L +D HPL LV G L +D +++ H++REAN +
Sbjct: 169 WERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRL 228
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPR 91
ADGLA+ AF LGFH D G PR
Sbjct: 229 ADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 268
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 67.4 bits (163), Expect = 2e-09
Identities = 37/104 (35%), Positives = 54/104 (51%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+R R+ +E DS++ V L ++ HPL LV F+ RD +++ H++REAN +
Sbjct: 211 WERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRL 270
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T R + +
Sbjct: 271 ADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSRQVRM 314
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 67.0 bits (162), Expect = 2e-09
Identities = 37/104 (35%), Positives = 54/104 (51%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+R R+ +E DS++ V L ++ HPL LV F+ RD +++ H++REAN +
Sbjct: 211 WERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRL 270
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T R + +
Sbjct: 271 ADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSRQVRM 314
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 67.0 bits (162), Expect = 2e-09
Identities = 37/104 (35%), Positives = 54/104 (51%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+R R+ +E DS++ V L ++ HPL LV F+ RD +++ H++REAN +
Sbjct: 211 WERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRL 270
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
ADGLA+ AFS LGFH D G T R + +
Sbjct: 271 ADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVSRQVRM 314
>gb|EMJ15395.1| hypothetical protein PRUPE_ppa021592mg [Prunus persica]
Length = 172
Score = 65.9 bits (159), Expect = 5e-09
Identities = 37/104 (35%), Positives = 52/104 (50%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
WD G+ V +E DS AV LL P+ HPLFS+++ + + D ++HIFRE N
Sbjct: 69 WDAGFRTVEIECDSTSAVALLKSPIVSTHPLFSIINCCKLKIHEDWCCYVKHIFREQNCA 128
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
AD LA + F G H +AD G PRL+++
Sbjct: 129 ADALAVKCYDFAPGLHVFLEAPAFLSNVLAADVRGAVRPRLVSV 172
>gb|AAD49762.2|AC007932_10 F11A17.8 [Arabidopsis thaliana]
Length = 803
Score = 65.9 bits (159), Expect = 5e-09
Identities = 39/103 (37%), Positives = 53/103 (51%)
Frame = -3
Query: 387 DRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGVA 208
+R RV +E DS+L V LL + +PL LV GF+ RD +++ H++REAN +A
Sbjct: 4 ERRASRVVIEVDSELVVGLLTTGISEANPLSFLVRLCHGFILRDWIVRIVHVYREANRLA 63
Query: 207 DGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLIAL 79
DGLA+ FS LGFH D G PR + L
Sbjct: 64 DGLANYVFSLPLGFHSFECVPEHVRDILLEDTGGTCFPRQVRL 106
>ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614777 [Citrus sinensis]
Length = 320
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/76 (44%), Positives = 44/76 (57%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W G+ RV +E DS + L+ P + F+L+ Q LRRD ++ HI+REAN V
Sbjct: 217 WQYGFRRVYVEVDSMCVMRLISNPNPPINEHFTLIQEIQALLRRDWLTKVEHIYREANEV 276
Query: 210 ADGLASLAFSFCLGFH 163
AD LAS FSF LG H
Sbjct: 277 ADFLASYNFSFSLGLH 292
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/76 (44%), Positives = 47/76 (61%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+R R+ +E DS+L V L + HPL LV GF+ RD +++ H++REAN +
Sbjct: 691 WERKITRLEVEVDSELVVGFLTTWISDSHPLSFLVRLCYGFISRDWIVRISHVYREANRL 750
Query: 210 ADGLASLAFSFCLGFH 163
ADGLA+ A S LGFH
Sbjct: 751 ADGLANYASSLPLGFH 766
>gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W+ R+ LE DS L V L + HPL LV GF+ RD +++ H++R+AN
Sbjct: 69 WEHRVTRLVLEVDSSLVVGFLTTGIGDSHPLSILVRLCYGFIARDWIVRVTHVYRKANRF 128
Query: 210 ADGLASLAFSFCLGFH 163
ADGLA+ FS LGFH
Sbjct: 129 ADGLANYVFSLPLGFH 144
>ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 224
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/102 (35%), Positives = 54/102 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
W G + +E DS +AV L+ +D HPL+SL++ Q L R+ ++ L H +RE+N V
Sbjct: 121 WQHGCNSLEVEVDSLVAVKLVLSVIDHLHPLYSLITNCQESLSRNWNVSLIHDYRESNSV 180
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLI 85
AD LAS+ + LG AD+ G + PRL+
Sbjct: 181 ADLLASIGHGYELGCRFFSSPPNDVIPLLEADYSGFSKPRLV 222
>gb|EMJ25981.1| hypothetical protein PRUPE_ppa023938mg, partial [Prunus persica]
Length = 189
Score = 62.0 bits (149), Expect = 8e-08
Identities = 36/102 (35%), Positives = 54/102 (52%)
Frame = -3
Query: 390 WDRGYMRVCLETDSQLAVLLLHKPMDRCHPLFSLVSRGQGFLRRD*DIQLRHIFREANGV 211
WD G+ V +E+DS++AV LL+ HPLFS+++ + + D + +RHI E N
Sbjct: 86 WDFGFRTVEVESDSKVAVTLLNSLTISTHPLFSIINCCKVKMSVDWNCSVRHILLEQNCA 145
Query: 210 ADGLASLAFSFCLGFHXXXXXXXXXXXXXSADFWGRTTPRLI 85
AD LA+++F F G H AD G + PRL+
Sbjct: 146 ADALAAISFDFNPGLHIFEEMPACIFDILVADSRGDSRPRLL 187