BLASTX nr result
ID: Rheum21_contig00028570
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028570
(391 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 75 3e-19
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 70 2e-17
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 70 2e-17
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 71 2e-17
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 70 3e-17
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 69 1e-16
gb|ABK28199.1| unknown [Arabidopsis thaliana] 67 6e-16
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 67 6e-16
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 67 6e-16
gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata] 69 6e-16
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 71 8e-16
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 67 1e-15
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 65 2e-15
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 70 3e-15
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 64 1e-14
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 64 1e-14
gb|ABK28138.1| unknown [Arabidopsis thaliana] 63 4e-14
gb|ABE65396.1| hypothetical protein At1g26950 [Arabidopsis thali... 63 4e-14
gb|AAD14501.1| Hypothetical protein [Arabidopsis thaliana] 63 4e-14
ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614... 57 5e-14
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 75.5 bits (184), Expect(2) = 3e-19
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G A AGG +RN G+W+GGF NIG+C+ P+AELWG GL AWDKG+ R
Sbjct: 1084 GLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRR 1134
Score = 45.1 bits (105), Expect(2) = 3e-19
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L QGF RDW ++ HV+ EAN + D LA++AF+ L
Sbjct: 1157 PLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPL 1200
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 69.7 bits (169), Expect(2) = 2e-17
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDK 177
G A+AGGVLR+ G W GGF NIG CS P AELWG+ GL FAW+K
Sbjct: 582 GLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 628
Score = 44.7 bits (104), Expect(2) = 2e-17
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L GFL++DW ++ HV+ EAN + D LA++AFS L
Sbjct: 655 PLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSL 698
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 69.7 bits (169), Expect(2) = 2e-17
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDK 177
G A+AGGVLR+ G W GGF NIG CS P AELWG+ GL FAW+K
Sbjct: 473 GLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEK 519
Score = 44.7 bits (104), Expect(2) = 2e-17
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L GFL++DW ++ HV+ EAN + D LA++AFS L
Sbjct: 546 PLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSL 589
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 71.2 bits (173), Expect(2) = 2e-17
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G ATAGG LRN +G+W GF NIG C P+AELWG+ GL AWD+G R
Sbjct: 86 GLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAWDRGITR 136
Score = 43.1 bits (100), Expect(2) = 2e-17
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV + GFL RDW ++ HV+ EAN + D LA++AF L
Sbjct: 159 PLSFLVRMCHGFLSRDWIVRIGHVYREANRLADGLANYAFDLPL 202
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 69.7 bits (169), Expect(2) = 3e-17
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G A A G + N G+W+GGF NIG+C P+AELWG GL AWDKG+ R
Sbjct: 823 GLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRR 873
Score = 43.9 bits (102), Expect(2) = 3e-17
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAF 377
PL LV L QGF RDW ++ HV+ EAN + D LA++AF
Sbjct: 896 PLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAF 935
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 69.3 bits (168), Expect(2) = 1e-16
Identities = 29/51 (56%), Positives = 34/51 (66%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G ATAGGV+R+ G+W GGF NIG CS P+AELWG+ G AW K R
Sbjct: 656 GLATAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGFYLAWTKALTR 706
Score = 42.4 bits (98), Expect(2) = 1e-16
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L G L +DW ++ HV+ EAN + D LA++AFS L
Sbjct: 729 PLSFLVRLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLPL 772
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 66.6 bits (161), Expect(2) = 6e-16
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G A+AGGVLR+ G W GGF NIG CS P+AELWG+ GL AW++ R
Sbjct: 167 GLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTR 217
Score = 42.7 bits (99), Expect(2) = 6e-16
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +3
Query: 252 VIPLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
V PL LV L F+ RDW ++ HV+ EAN + D LA++AFS L
Sbjct: 238 VHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 66.6 bits (161), Expect(2) = 6e-16
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G A+AGGVLR+ G W GGF NIG CS P+AELWG+ GL AW++ R
Sbjct: 167 GLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTR 217
Score = 42.7 bits (99), Expect(2) = 6e-16
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +3
Query: 252 VIPLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
V PL LV L F+ RDW ++ HV+ EAN + D LA++AFS L
Sbjct: 238 VHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 66.6 bits (161), Expect(2) = 6e-16
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G A+AGGVLR+ G W GGF NIG CS P+AELWG+ GL AW++ R
Sbjct: 167 GLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTR 217
Score = 42.7 bits (99), Expect(2) = 6e-16
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +3
Query: 252 VIPLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
V PL LV L F+ RDW ++ HV+ EAN + D LA++AFS L
Sbjct: 238 VHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPL 283
>gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 68.6 bits (166), Expect(2) = 6e-16
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWD 174
G ATA GVLRN+ G W GGF NIG CS P+AELWG+ GL AW+
Sbjct: 25 GLATASGVLRNSDGKWCGGFALNIGRCSAPLAELWGVYYGLYTAWE 70
Score = 40.8 bits (94), Expect(2) = 6e-16
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L GF+ RDW ++ HV+ +AN D LA++ FS L
Sbjct: 98 PLSILVRLCYGFIARDWIVRVTHVYRKANRFADGLANYVFSLPL 141
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 71.2 bits (173), Expect(2) = 8e-16
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G ATAGGVLR+ +G W+GGF NIG CS P+AELWG+ GL AW +G R
Sbjct: 174 GFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARR 224
Score = 37.7 bits (86), Expect(2) = 8e-16
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL L+ L FL + W ++ HV+ EAN + D LA++AFS L
Sbjct: 247 PLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSL 290
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 67.0 bits (162), Expect(2) = 1e-15
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +1
Query: 37 GRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G ATAGG+LR G W+GGF NIG CS P+AELW + GL AW++ R
Sbjct: 647 GLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWERKITR 697
Score = 41.6 bits (96), Expect(2) = 1e-15
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
PL LV L GF+ RDW ++ HV+ EAN + D LA++A S L
Sbjct: 720 PLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYASSLPL 763
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 65.1 bits (157), Expect(2) = 2e-15
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +1
Query: 43 ATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
A+ GGV+RNA GDW F+ +G CS AELWG++ GL+ AWD G+ +
Sbjct: 514 ASTGGVIRNAEGDWQAEFLAKLGKCSAYRAELWGVLHGLRLAWDSGFKK 562
Score = 42.7 bits (99), Expect(2) = 2e-15
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3
Query: 267 NLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAF 377
+L+ + L+++W + H +CE N+VTDYLAS+AF
Sbjct: 588 DLIRAIKDVLQKEWEVSFMHTYCEGNMVTDYLASYAF 624
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 69.7 bits (169), Expect(2) = 3e-15
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +1
Query: 43 ATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
A+AGGV RNA GDW GFV +G CS AELWGI+ GL+ AWD G+ +
Sbjct: 272 ASAGGVKRNAEGDWQAGFVAKLGKCSAYRAELWGILHGLRLAWDSGFKK 320
Score = 37.4 bits (85), Expect(2) = 3e-15
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 267 NLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAF 377
+L++ + L+++W + H + E N+V DYLAS+AF
Sbjct: 346 DLISAIKNVLQKEWEVSFMHTYREGNMVADYLASYAF 382
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 64.3 bits (155), Expect(2) = 1e-14
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 43 ATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKG 180
ATAGGV+R+ G+W GF NIG CS P+AELWG GL AW++G
Sbjct: 127 ATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERG 172
Score = 40.8 bits (94), Expect(2) = 1e-14
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAF 377
PL LV L G L +DW+++ HV+ EAN + D LA++AF
Sbjct: 198 PLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAF 237
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 64.3 bits (155), Expect(2) = 1e-14
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 43 ATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKG 180
ATAGGV+R+ G+W GF NIG CS P+AELWG GL AW++G
Sbjct: 108 ATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERG 153
Score = 40.8 bits (94), Expect(2) = 1e-14
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 258 PLFNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAF 377
PL LV L G L +DW+++ HV+ EAN + D LA++AF
Sbjct: 179 PLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAF 218
>gb|ABK28138.1| unknown [Arabidopsis thaliana]
Length = 163
Score = 62.8 bits (151), Expect(2) = 4e-14
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 55 GVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G LR+ +GDW G F N+G C+ P+AELWG+ GL AW+KG R
Sbjct: 21 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITR 65
Score = 40.4 bits (93), Expect(2) = 4e-14
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 270 LVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
LV L GF +DW ++ HV+ EAN D LA++AFS +L
Sbjct: 92 LVRLCYGFSSKDWIVRVSHVYREANRFADELANYAFSLLL 131
>gb|ABE65396.1| hypothetical protein At1g26950 [Arabidopsis thaliana]
Length = 162
Score = 62.8 bits (151), Expect(2) = 4e-14
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 55 GVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G LR+ +GDW G F N+G C+ P+AELWG+ GL AW+KG R
Sbjct: 21 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITR 65
Score = 40.4 bits (93), Expect(2) = 4e-14
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 270 LVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
LV L GF +DW ++ HV+ EAN D LA++AFS +L
Sbjct: 92 LVRLCYGFSSKDWIVRVSHVYREANRFADELANYAFSLLL 131
>gb|AAD14501.1| Hypothetical protein [Arabidopsis thaliana]
Length = 158
Score = 62.8 bits (151), Expect(2) = 4e-14
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 55 GVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYMR 189
G LR+ +GDW G F N+G C+ P+AELWG+ GL AW+KG R
Sbjct: 17 GALRDEYGDWRGSFALNLGRCTAPLAELWGVYYGLVIAWEKGITR 61
Score = 40.4 bits (93), Expect(2) = 4e-14
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 270 LVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
LV L GF +DW ++ HV+ EAN D LA++AFS +L
Sbjct: 88 LVRLCYGFSSKDWIVRVSHVYREANRFADELANYAFSLLL 127
>ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614777 [Citrus sinensis]
Length = 320
Score = 57.4 bits (137), Expect(2) = 5e-14
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +1
Query: 7 SILDPGSVRDGRATAGGVLRNAHGDWVGGFVYNIGNCSVPMAELWGIIQGLKFAWDKGYM 186
S+ D G A AGG++R+ G W G+ N+G CSV ELWG+ GL AW G+
Sbjct: 163 SVPDGAKKSSGIAGAGGLIRDFRGVWQVGYSANLGVCSVTSTELWGLFHGLSIAWQYGFR 222
Query: 187 R 189
R
Sbjct: 223 R 223
Score = 45.4 bits (106), Expect(2) = 5e-14
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 264 FNLVTLGQGFLRRDWAIQSRHVFCEANVVTDYLASFAFSFVL 389
F L+ Q LRRDW + H++ EAN V D+LAS+ FSF L
Sbjct: 248 FTLIQEIQALLRRDWLTKVEHIYREANEVADFLASYNFSFSL 289