BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00028404
         (272 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73258.1| putative GAG-POL precursor [Oryza sativa Japonica...    94   2e-17
gb|ABA96920.1| retrotransposon protein, putative, unclassified [...    94   2e-17
gb|ABF97014.1| retrotransposon protein, putative, unclassified [...    94   2e-17
gb|AAO23092.1| putative polyprotein [Oryza sativa Japonica Group...    93   4e-17
gb|ABA97615.1| retrotransposon protein, putative, unclassified [...    93   4e-17
gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subc...    93   4e-17
gb|AAP44597.1| putative polyprotein [Oryza sativa Japonica Group]      93   4e-17
gb|AAT77305.1| putative polyprotein [Oryza sativa Japonica Group]      92   5e-17
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc...    92   7e-17
gb|AAS98502.1| putative polyprotein [Oryza sativa Japonica Group]      92   9e-17
gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymera...    91   1e-16
emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]          91   1e-16
gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]      91   2e-16
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    91   2e-16
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    91   2e-16
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-...    91   2e-16
emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group] g...    91   2e-16
ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group] g...    91   2e-16
gb|ABG22552.1| retrotransposon protein, putative, unclassified, ...    91   2e-16
gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subc...    91   2e-16

>gb|AAO73258.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
          Length = 562

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 50/90 (55%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L  LP L SP  G +L LY
Sbjct: 115 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSLPALISPPLGSDLLLY 174

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 175 LAASPVAVSAALVQETEFGQKPVYFVSEAL 204


>gb|ABA96920.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 634

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 52/90 (57%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           LGRF  K AE+  PFF  L+    F WTPEC+AAF ELK +L   PTLDS   G EL LY
Sbjct: 333 LGRFLSKEAERGFPFFKTLQGAGKFCWTPECQAAFDELKQYLQSPPTLDSLAPGSELLLY 392

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYFISKAL
Sbjct: 393 LAASPVVVSAALVQETESGQKPVYFISKAL 422


>gb|ABF97014.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 574

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 50/90 (55%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L  LP L SP  G +L LY
Sbjct: 127 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSLPALISPPLGSDLLLY 186

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 187 LAASPVAVSAALVQETEFGQKPVYFVSEAL 216


>gb|AAO23092.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709049|gb|ABF96844.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 658

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 49/90 (54%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+ AF ELK +L   P L SP  G EL LY
Sbjct: 20  LSRFLSKAAERGLPFFKTLRGAGKFSWTPECQVAFAELKQYLQSPPALVSPTPGSELLLY 79

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 80  LAASPVAVSAALVQETESGQKPVYFVSEAL 109


>gb|ABA97615.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 827

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 50/90 (55%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K+AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 532 LSRFLPKVAERGLPFFKTLRGMGKFSWTPECQAAFDELKQYLQSPPALISPTLGSELLLY 591

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 592 LAASPVAVSAALVQETEFGQKPVYFVSEAL 621


>gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1908

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 51/90 (56%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 1149 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLY 1208

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     ISA LV+E E   KPVYF+S+AL
Sbjct: 1209 LAASPVAISAALVQETESGQKPVYFVSEAL 1238


>gb|AAP44597.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1862

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 51/90 (56%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 1103 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLY 1162

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     ISA LV+E E   KPVYF+S+AL
Sbjct: 1163 LAASPVAISAALVQETESGQKPVYFVSEAL 1192


>gb|AAT77305.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 986

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 253 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLY 312

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 313 LAASPVAVSAALVQETESGQKPVYFVSEAL 342


>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1767

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF    AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 1012 LSRFLSTAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLY 1071

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA  S  +SA LV+E E   KPVYF+S+AL
Sbjct: 1072 LAASSVAVSAALVQETESGQKPVYFVSEAL 1101


>gb|AAS98502.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1048

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 367 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKRYLQSPPALISPPPGSELLLY 426

Query: 188 LATGSREISAVLVREQE---KPVYFISKAL 268
           LA     +SA LV+E E   KPVYF+S+AL
Sbjct: 427 LAASPVAVSAALVQEIESGQKPVYFVSEAL 456


>gb|AAX95295.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
           [Oryza sativa Japonica Group]
           gi|108864239|gb|ABA92634.2| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1146

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+AAF ELK +L   PTL SP  G EL LY
Sbjct: 645 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQNPPTLISPAPGNELLLY 704

Query: 188 LATGSREISAVLVREQ---EKPVYFISKAL 268
           LA     +SA LV+E+   +K +YF+S+AL
Sbjct: 705 LAASPVPVSAALVQERDSGQKSIYFVSEAL 734


>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]
          Length = 1154

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AE+ LPFF  LR    F WTPEC+AAF E+K +    PTL SP  G EL LY
Sbjct: 764  LSRFLSKAAERGLPFFKTLRGAGKFSWTPECQAAFDEVKQYPQSPPTLVSPALGSELLLY 823

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     +SA LV+E E   KPVYFIS+AL
Sbjct: 824  LAASPVAVSAALVQETESGQKPVYFISEAL 853


>gb|AAO19368.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 777

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 48/90 (53%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR    F WTPEC+A F ELK +L   P L SP  G EL LY
Sbjct: 288 LSRFLSKAAERGLPFFKTLRGAGKFNWTPECQAVFDELKQYLQSPPALISPASGSELLLY 347

Query: 188 LATGSREISAVLVREQ---EKPVYFISKAL 268
           LA     +SA LV+E    +KPVYF+S+AL
Sbjct: 348 LAASPVAVSAALVQETDSGQKPVYFVSEAL 377


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AEK LPFF  LR    F+WT EC+ AF +LK +L ++PTL SP +G+ L +Y
Sbjct: 1210 LSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMY 1269

Query: 188  LATGSREISAVLVREQEK---PVYFISKAL 268
            +A     +SAVLV+E+E    PVYF+S+AL
Sbjct: 1270 VAATPATVSAVLVQEEENRQVPVYFVSEAL 1299


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AEK LPFF  LR    F+WT EC+ AF +LK +L ++PTL SP +G+ L +Y
Sbjct: 1228 LSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMY 1287

Query: 188  LATGSREISAVLVREQEK---PVYFISKAL 268
            +A     +SAVLV+E+E    PVYF+S+AL
Sbjct: 1288 VAATPATVSAVLVQEEENRQVPVYFVSEAL 1317


>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group]
          Length = 1587

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 49/90 (54%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AE++LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 1057 LSRFLSKAAERALPFFKTLRGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLY 1116

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     +S  LV+E E   KPVYF+S+AL
Sbjct: 1117 LAASPVAVSVALVQETEFGQKPVYFVSEAL 1146


>emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group]
            gi|38343994|emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa
            Japonica Group]
          Length = 2074

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K  E+ LPFF  LR+ + F WTPEC+AAF ELK HL   P L SP +G EL LY
Sbjct: 1941 LSRFLSKAVERGLPFFKTLRDARKFNWTPECQAAFDELKQHLQSPPVLISPPRGSELLLY 2000

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     +SA LV++ E   K VYF+S+AL
Sbjct: 2001 LAASPVAVSAALVQKTESRQKSVYFVSEAL 2030


>ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
           gi|255680267|dbj|BAF28648.2| Os11g0617500, partial
           [Oryza sativa Japonica Group]
          Length = 627

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR  + F WTPEC+AAF ELK +L   P L S   G EL LY
Sbjct: 303 LNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGSELLLY 362

Query: 188 LATGSREISAVLVRE---QEKPVYFISKAL 268
           LA     +SA LV+E    +KPVYFISKAL
Sbjct: 363 LAASPVAVSAALVQEIDSGQKPVYFISKAL 392


>gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 612

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8   LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
           L RF  K AE+ LPFF  LR  + F WTPEC+AAF ELK +L   P L S   G EL LY
Sbjct: 288 LNRFLSKAAERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGSELLLY 347

Query: 188 LATGSREISAVLVRE---QEKPVYFISKAL 268
           LA     +SA LV+E    +KPVYFISKAL
Sbjct: 348 LAASPVAVSAALVQEIDSGQKPVYFISKAL 377


>gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1590

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 49/90 (54%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
 Frame = +2

Query: 8    LGRFCLKLAEKSLPFFSVLRNPQNFQWTPECEAAFVELKAHLVKLPTLDSPIQGEELQLY 187
            L RF  K AE++LPFF  LR    F WTPEC+AAF ELK +L   P L SP  G EL LY
Sbjct: 1055 LSRFLSKAAERALPFFKTLRGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLY 1114

Query: 188  LATGSREISAVLVREQE---KPVYFISKAL 268
            LA     +S  LV+E E   KPVYF+S+AL
Sbjct: 1115 LAASPVAVSVALVQETEFGQKPVYFVSEAL 1144