BLASTX nr result
ID: Rheum21_contig00028378
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028378
(261 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC19560.1| Structure-specific endonuclease subunit [Morus no... 82 6e-14
gb|EOY34667.1| Excinuclease ABC [Theobroma cacao] 81 1e-13
ref|XP_002319418.2| hypothetical protein POPTR_0013s15190g, part... 81 2e-13
ref|XP_006410121.1| hypothetical protein EUTSA_v10016841mg [Eutr... 79 8e-13
ref|XP_006294402.1| hypothetical protein CARUB_v10023419mg, part... 77 3e-12
gb|EOY18169.1| Excinuclease ABC [Theobroma cacao] 76 5e-12
ref|NP_180594.2| Excinuclease ABC, C subunit, N-terminal [Arabid... 75 9e-12
gb|AAC16937.1| hypothetical protein [Arabidopsis thaliana] 75 9e-12
ref|XP_002325655.2| endo/excinuclease amino terminal domain-cont... 75 1e-11
ref|XP_002276725.2| PREDICTED: structure-specific endonuclease s... 75 1e-11
emb|CBI15837.3| unnamed protein product [Vitis vinifera] 75 1e-11
ref|XP_002517715.1| nuclease, putative [Ricinus communis] gi|223... 75 1e-11
ref|XP_006431991.1| hypothetical protein CICLE_v10001469mg [Citr... 74 2e-11
ref|XP_006843734.1| hypothetical protein AMTR_s00007p00225130 [A... 74 2e-11
gb|ESW18854.1| hypothetical protein PHAVU_006G076300g [Phaseolus... 74 2e-11
ref|XP_002881103.1| endo/excinuclease amino terminal domain-cont... 74 2e-11
ref|XP_003537333.1| PREDICTED: uncharacterized protein LOC100801... 73 3e-11
ref|XP_006361297.1| PREDICTED: uncharacterized protein LOC102597... 73 5e-11
ref|XP_004294742.1| PREDICTED: uncharacterized protein LOC101299... 72 6e-11
ref|XP_004246967.1| PREDICTED: uncharacterized protein LOC101267... 72 8e-11
>gb|EXC19560.1| Structure-specific endonuclease subunit [Morus notabilis]
Length = 378
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/64 (62%), Positives = 46/64 (71%)
Frame = +3
Query: 69 KASKNCSKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRR 248
K K + E ++ LT G+ +G KGFYACYLL SLSPRHKGHTYIGFTVNP+RR
Sbjct: 2 KQRKRAQREPSETLTQELTVEIGD-DGERKGFYACYLLVSLSPRHKGHTYIGFTVNPRRR 60
Query: 249 IRQH 260
IRQH
Sbjct: 61 IRQH 64
>gb|EOY34667.1| Excinuclease ABC [Theobroma cacao]
Length = 460
Score = 81.3 bits (199), Expect = 1e-13
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +3
Query: 36 ARTGISRSTMRKASKNCSKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHT 215
+ T I+ R+ S++ K E+ ++ D G+ KGF+ACYLLTSLSPRHKGHT
Sbjct: 23 SETLINYYRQRRKSRDLQGGKAEEIRESGDDDKGKQ---GKGFFACYLLTSLSPRHKGHT 79
Query: 216 YIGFTVNPKRRIRQH 260
YIGFTVNP+RRIRQH
Sbjct: 80 YIGFTVNPRRRIRQH 94
>ref|XP_002319418.2| hypothetical protein POPTR_0013s15190g, partial [Populus
trichocarpa] gi|550325896|gb|EEE95341.2| hypothetical
protein POPTR_0013s15190g, partial [Populus trichocarpa]
Length = 431
Score = 80.9 bits (198), Expect = 2e-13
Identities = 40/57 (70%), Positives = 43/57 (75%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
KRK K + L GEAE G GF+ACYLLTSL PR KGHTYIGFTVNP+RRIRQH
Sbjct: 4 KRKTPKNPQEL----GEAEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQH 56
>ref|XP_006410121.1| hypothetical protein EUTSA_v10016841mg [Eutrema salsugineum]
gi|557111290|gb|ESQ51574.1| hypothetical protein
EUTSA_v10016841mg [Eutrema salsugineum]
Length = 364
Score = 78.6 bits (192), Expect = 8e-13
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGN--KGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
KR KTL + + G KGF+ACY+LTSLSPRHKGHTYIGFTVNP+RRIRQH
Sbjct: 4 KRGRRGNPKTLDSVAEDGVTGKEGKGFFACYILTSLSPRHKGHTYIGFTVNPRRRIRQH 62
>ref|XP_006294402.1| hypothetical protein CARUB_v10023419mg, partial [Capsella rubella]
gi|482563110|gb|EOA27300.1| hypothetical protein
CARUB_v10023419mg, partial [Capsella rubella]
Length = 382
Score = 76.6 bits (187), Expect = 3e-12
Identities = 36/65 (55%), Positives = 44/65 (67%)
Frame = +3
Query: 66 RKASKNCSKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKR 245
R+ +R+G + + +G KGF+ACYLLTSLSPRHKG TYIGFTVNP+R
Sbjct: 4 RERETKMRERRGNRKTLDPAGEDGVTGKEGKGFFACYLLTSLSPRHKGQTYIGFTVNPRR 63
Query: 246 RIRQH 260
RIRQH
Sbjct: 64 RIRQH 68
>gb|EOY18169.1| Excinuclease ABC [Theobroma cacao]
Length = 225
Score = 75.9 bits (185), Expect = 5e-12
Identities = 34/46 (73%), Positives = 41/46 (89%), Gaps = 2/46 (4%)
Frame = +3
Query: 129 INGEAEGGNKG--FYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
++G+ + G +G F+ACYLLTSLSPRHKGHTYIGFTVNP+RRIRQH
Sbjct: 1 MSGDDDKGKQGEGFFACYLLTSLSPRHKGHTYIGFTVNPRRRIRQH 46
>ref|NP_180594.2| Excinuclease ABC, C subunit, N-terminal [Arabidopsis thaliana]
gi|51968920|dbj|BAD43152.1| hypothetical protein
[Arabidopsis thaliana] gi|51968928|dbj|BAD43156.1|
hypothetical protein [Arabidopsis thaliana]
gi|51971411|dbj|BAD44370.1| hypothetical protein
[Arabidopsis thaliana] gi|66792676|gb|AAY56440.1|
At2g30350 [Arabidopsis thaliana]
gi|330253280|gb|AEC08374.1| Excinuclease ABC, C subunit,
N-terminal [Arabidopsis thaliana]
Length = 368
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
+++G + + +G KGF+ACYLLTSLSPRHKG TYIGFTVNP+RRIRQH
Sbjct: 3 EKRGNRKALDPVGEDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQH 59
>gb|AAC16937.1| hypothetical protein [Arabidopsis thaliana]
Length = 324
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
+++G + + +G KGF+ACYLLTSLSPRHKG TYIGFTVNP+RRIRQH
Sbjct: 3 EKRGNRKALDPVGEDGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQH 59
>ref|XP_002325655.2| endo/excinuclease amino terminal domain-containing family protein,
partial [Populus trichocarpa]
gi|550317584|gb|EEF00037.2| endo/excinuclease amino
terminal domain-containing family protein, partial
[Populus trichocarpa]
Length = 212
Score = 74.7 bits (182), Expect = 1e-11
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +3
Query: 141 AEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
AE G GF+ACYLLTSL PR KGHTYIGFTVNP+RRIRQH
Sbjct: 8 AEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQH 47
>ref|XP_002276725.2| PREDICTED: structure-specific endonuclease subunit SLX1 homolog
2-like [Vitis vinifera]
Length = 364
Score = 74.7 bits (182), Expect = 1e-11
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +3
Query: 87 SKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
+KRKG T +N E +G + F+ACYLL SLSPRHKGH+YIGFTVNP+RRIRQH
Sbjct: 2 TKRKGRSEISEET-LNSEEKGDD--FFACYLLASLSPRHKGHSYIGFTVNPRRRIRQH 56
>emb|CBI15837.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 74.7 bits (182), Expect = 1e-11
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +3
Query: 87 SKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
+KRKG T +N E +G + F+ACYLL SLSPRHKGH+YIGFTVNP+RRIRQH
Sbjct: 2 TKRKGRSEISEET-LNSEEKGDD--FFACYLLASLSPRHKGHSYIGFTVNPRRRIRQH 56
>ref|XP_002517715.1| nuclease, putative [Ricinus communis] gi|223543113|gb|EEF44647.1|
nuclease, putative [Ricinus communis]
Length = 413
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = +3
Query: 138 EAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
E E KGFYACYLLTSL PR KGHTYIGFTVNP+RRIRQH
Sbjct: 19 EDEEEGKGFYACYLLTSLCPRFKGHTYIGFTVNPRRRIRQH 59
>ref|XP_006431991.1| hypothetical protein CICLE_v10001469mg [Citrus clementina]
gi|568827655|ref|XP_006468166.1| PREDICTED:
uncharacterized protein LOC102631105 [Citrus sinensis]
gi|557534113|gb|ESR45231.1| hypothetical protein
CICLE_v10001469mg [Citrus clementina]
Length = 386
Score = 74.3 bits (181), Expect = 2e-11
Identities = 41/76 (53%), Positives = 46/76 (60%), Gaps = 19/76 (25%)
Frame = +3
Query: 90 KRKGEKT----------SKTLTDINGE---------AEGGNKGFYACYLLTSLSPRHKGH 212
KRKG K SKTL + + A+ KGF+ACYLLTSL PR KGH
Sbjct: 8 KRKGSKAVHDSETLISKSKTLDPVKDDFEEEEEEQKAKDQRKGFFACYLLTSLCPRFKGH 67
Query: 213 TYIGFTVNPKRRIRQH 260
TYIGFTVNP+RRIRQH
Sbjct: 68 TYIGFTVNPRRRIRQH 83
>ref|XP_006843734.1| hypothetical protein AMTR_s00007p00225130 [Amborella trichopoda]
gi|548846102|gb|ERN05409.1| hypothetical protein
AMTR_s00007p00225130 [Amborella trichopoda]
Length = 487
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/59 (62%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Frame = +3
Query: 93 RKGEKTSKTLTDINGEAEG---GNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
RK K + T I+G E GF+ACYLL SLSPRHKGHTYIGFT+NP+RRIRQH
Sbjct: 2 RKKNKGRVSETPISGPPETLIQEKHGFFACYLLCSLSPRHKGHTYIGFTINPRRRIRQH 60
>gb|ESW18854.1| hypothetical protein PHAVU_006G076300g [Phaseolus vulgaris]
Length = 374
Score = 73.9 bits (180), Expect = 2e-11
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +3
Query: 63 MRKASKNCSKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPK 242
MRK + + E + N + GF+ACYLLTSLSPR+KGHTYIGFTVNP+
Sbjct: 1 MRKRRVASVEEEEETLQNHGNNQNEKENSEGNGFFACYLLTSLSPRYKGHTYIGFTVNPR 60
Query: 243 RRIRQH 260
RRIRQH
Sbjct: 61 RRIRQH 66
>ref|XP_002881103.1| endo/excinuclease amino terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297326942|gb|EFH57362.1| endo/excinuclease amino
terminal domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 383
Score = 73.9 bits (180), Expect = 2e-11
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +3
Query: 156 KGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
KGF+ACYLLTSLSPRHKG TYIGFTVNP+RRIRQH
Sbjct: 25 KGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQH 59
>ref|XP_003537333.1| PREDICTED: uncharacterized protein LOC100801307 [Glycine max]
Length = 380
Score = 73.2 bits (178), Expect = 3e-11
Identities = 34/43 (79%), Positives = 37/43 (86%)
Frame = +3
Query: 132 NGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
N + EG GF+ACYLLTSLSPR KGHTYIGFTVNP+RRIRQH
Sbjct: 27 NEDCEGN--GFFACYLLTSLSPRFKGHTYIGFTVNPRRRIRQH 67
>ref|XP_006361297.1| PREDICTED: uncharacterized protein LOC102597488 [Solanum tuberosum]
Length = 369
Score = 72.8 bits (177), Expect = 5e-11
Identities = 40/83 (48%), Positives = 50/83 (60%)
Frame = +3
Query: 12 RGVDRGTLARTGISRSTMRKASKNCSKRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSL 191
R ++RG R R R+ K +R+ +K D + E E F+ACYLLTS+
Sbjct: 3 RWIERGERER---GREREREMGKRKERREQKKVCSEGGDESKEVEENR--FFACYLLTSM 57
Query: 192 SPRHKGHTYIGFTVNPKRRIRQH 260
PR KGHTYIGFTVNP+RRIRQH
Sbjct: 58 CPRFKGHTYIGFTVNPRRRIRQH 80
>ref|XP_004294742.1| PREDICTED: uncharacterized protein LOC101299940 [Fragaria vesca
subsp. vesca]
Length = 400
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
+++ + S+TLT + E EGG F+ACYLLTS PR+KGHTYIGFTVNP+RRIRQH
Sbjct: 3 QQRSKNPSETLT-MPEEEEGGR--FFACYLLTSRCPRYKGHTYIGFTVNPRRRIRQH 56
>ref|XP_004246967.1| PREDICTED: uncharacterized protein LOC101267927 [Solanum
lycopersicum]
Length = 350
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +3
Query: 90 KRKGEKTSKTLTDINGEAEGGNKGFYACYLLTSLSPRHKGHTYIGFTVNPKRRIRQH 260
KRK +K D + E EG F+ACYLLTS+ PR KGHTYIGFTVNP+RRIRQH
Sbjct: 3 KRKEQKKVCHRDDEDKEVEGSR--FFACYLLTSMCPRFKGHTYIGFTVNPRRRIRQH 57