BLASTX nr result
ID: Rheum21_contig00028226
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028226
(240 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] 85 1e-14
gb|AEV42258.1| hypothetical protein [Beta vulgaris] 79 8e-13
gb|AAO45752.1| pol protein [Cucumis melo subsp. melo] 79 8e-13
gb|ABA95392.1| retrotransposon protein, putative, Ty3-gypsy subc... 78 1e-12
gb|ADB85337.1| putative retrotransposon protein [Phyllostachys e... 77 3e-12
gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor] 76 4e-12
gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo s... 76 5e-12
gb|ABM55240.1| retrotransposon protein [Beta vulgaris] 76 5e-12
ref|XP_004243106.1| PREDICTED: uncharacterized protein LOC101256... 75 1e-11
ref|XP_004153101.1| PREDICTED: uncharacterized protein LOC101211... 74 2e-11
ref|XP_004974643.1| PREDICTED: uncharacterized protein LOC101776... 74 2e-11
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic... 74 2e-11
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 74 3e-11
gb|ABA98111.1| retrotransposon protein, putative, Ty3-gypsy subc... 73 3e-11
gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subc... 73 3e-11
gb|ABA94586.1| retrotransposon protein, putative, Ty3-gypsy subc... 73 3e-11
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa Japonica Group] 73 3e-11
ref|WP_006199319.1| hypothetical protein, partial [Nodularia spu... 73 3e-11
emb|CAH67609.1| OSIGBa0145G11.8 [Oryza sativa Indica Group] 73 3e-11
gb|ABF97606.1| retrotransposon protein, putative, Ty3-gypsy subc... 73 3e-11
>emb|CAA73042.1| polyprotein [Ananas comosus]
Length = 871
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/79 (58%), Positives = 53/79 (67%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEI 182
NLRQRRWLEL+KDYDL I YHPGKANVVADALSRKS L + +T QP L Q R E+
Sbjct: 394 NLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVT-QPRLIEQMKRLEL 452
Query: 183 EVWCEKDQMMLNVMEIQST 239
E+ M L + +Q T
Sbjct: 453 EIVTPDTPMRLMTLVVQPT 471
>gb|AEV42258.1| hypothetical protein [Beta vulgaris]
Length = 1553
Score = 78.6 bits (192), Expect = 8e-13
Identities = 45/78 (57%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEI 182
N+RQRRWLELIKDYDLDI YH GKANVVADALSRKS+ L L V +L +F R +I
Sbjct: 969 NMRQRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLNT--LVVADKLCEEFSRLQI 1026
Query: 183 EVWCEKD-QMMLNVMEIQ 233
EV E + + +L+ + I+
Sbjct: 1027 EVVHEGEVERLLSALTIE 1044
>gb|AAO45752.1| pol protein [Cucumis melo subsp. melo]
Length = 923
Score = 78.6 bits (192), Expect = 8e-13
Identities = 43/79 (54%), Positives = 50/79 (63%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEI 182
N+RQRRWLEL+KDYD +I YHPGKANVVADALSRK + A +T Q L R R EI
Sbjct: 370 NMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHS--AALITRQAPLHRDLERAEI 427
Query: 183 EVWCEKDQMMLNVMEIQST 239
V M L + +Q T
Sbjct: 428 AVLVGAVTMQLAQLTVQPT 446
>gb|ABA95392.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 785
Score = 78.2 bits (191), Expect = 1e-12
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEI 182
NLRQRRWLELIKDYDL I YHPGKANVVADALSRK + + L QPEL +F + +
Sbjct: 236 NLRQRRWLELIKDYDLGIHYHPGKANVVADALSRK-LHHITASFLVNQPELHEEFQKLNL 294
Query: 183 EV 188
EV
Sbjct: 295 EV 296
>gb|ADB85337.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1053
Score = 76.6 bits (187), Expect = 3e-12
Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTV-----QPELQRQF 167
NLRQRRWLELIKDYDL I YHPGKANVVADALSRK+ C T+ QPEL +
Sbjct: 501 NLRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA------YCNTILVQKNQPELYEEL 554
Query: 168 VRGEIEVWCEKDQMMLNVMEIQST 239
+E+ +Q +N +E+Q T
Sbjct: 555 KHLNLEI---VNQGCVNALEVQPT 575
>gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
Length = 1484
Score = 76.3 bits (186), Expect = 4e-12
Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 23/84 (27%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRK-------STPELRVAC--------- 134
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRK +TPE C
Sbjct: 937 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKKYANELQATPESEELCAEFAYLNLG 996
Query: 135 -------LTVQPELQRQFVRGEIE 185
+ + P L+ + V+G++E
Sbjct: 997 MVVNATEIEITPTLEEEIVKGQLE 1020
>gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1359
Score = 75.9 bits (185), Expect = 5e-12
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFV 170
N+RQRRWLEL+KDYD +I YHPGKANVVADALSRK +A LTVQP L+++ +
Sbjct: 791 NMRQRRWLELVKDYDCEILYHPGKANVVADALSRK------LAQLTVQPTLRQKII 840
>gb|ABM55240.1| retrotransposon protein [Beta vulgaris]
Length = 1501
Score = 75.9 bits (185), Expect = 5e-12
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEI 182
N+RQRRWLELIKDYDLDI YH GKANVVADALSRKS+ L + L V EL R R +
Sbjct: 937 NMRQRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSL--STLIVPEELCRDMKRLNL 994
Query: 183 EV 188
E+
Sbjct: 995 EI 996
>ref|XP_004243106.1| PREDICTED: uncharacterized protein LOC101256304 [Solanum
lycopersicum]
Length = 647
Score = 74.7 bits (182), Expect = 1e-11
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPE 152
NLRQRRWLEL+KDYD+DI YHPGKAN+VADALSRKS L VQPE
Sbjct: 500 NLRQRRWLELLKDYDIDILYHPGKANIVADALSRKSMGSL----TDVQPE 545
>ref|XP_004153101.1| PREDICTED: uncharacterized protein LOC101211628 [Cucumis sativus]
Length = 153
Score = 74.3 bits (181), Expect = 2e-11
Identities = 41/78 (52%), Positives = 49/78 (62%)
Frame = +3
Query: 6 LRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVRGEIE 185
+RQRRWLEL+KDYD +I YHPGKANVVADALSRK + A +T Q L R R EI
Sbjct: 1 MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHS--AALITRQVPLHRDLERAEIA 58
Query: 186 VWCEKDQMMLNVMEIQST 239
V + L + +Q T
Sbjct: 59 VSVGRVTSQLAQLTVQPT 76
>ref|XP_004974643.1| PREDICTED: uncharacterized protein LOC101776408 [Setaria italica]
Length = 1375
Score = 73.9 bits (180), Expect = 2e-11
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVR-GE 179
N+RQRRWLELIKDY L+I YHPGKANVVADALSRK+ + C+T+Q L+ GE
Sbjct: 782 NMRQRRWLELIKDYKLEIHYHPGKANVVADALSRKA----QCHCMTIQSNLKTLCEEMGE 837
Query: 180 IEVWCEKDQMMLNVMEIQST 239
+ + K + NVM IQ T
Sbjct: 838 LSLEIVKYGTLQNVM-IQDT 856
>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTVQPELQRQFVR 173
N+RQRRWLELIKDY+L+I YHPGKANVVADALSRKS L VA + EL ++F R
Sbjct: 1052 NMRQRRWLELIKDYELEIHYHPGKANVVADALSRKSQVNLMVA-RPMPYELAKEFDR 1107
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550206|gb|ABA93003.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1436
Score = 73.6 bits (179), Expect = 3e-11
Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVR 173
NLRQRRWLELIKDYDL++ YHPGKAN+VADALSRKS LR+ +T PEL+ + +
Sbjct: 885 NLRQRRWLELIKDYDLEVHYHPGKANIVADALSRKSHCNHLRMEGIT--PELKEEIAQ 940
>gb|ABA98111.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 856 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMV--PELREEIAQLN 913
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 914 LHI---VPRGQINTLDIQ 928
>gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1469
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 881 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMV--PELREEIAQLN 938
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 939 LHI---VPRGQINTLDIQ 953
>gb|ABA94586.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1710
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 1282 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMV--PELREEIAQLN 1339
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 1340 LHI---VPRGQINTLDIQ 1354
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa Japonica Group]
Length = 1470
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 919 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMV--PELREEIAQLN 976
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 977 LHI---VPRGQINTLDIQ 991
>ref|WP_006199319.1| hypothetical protein, partial [Nodularia spumigena]
gi|119461524|gb|EAW42594.1| hypothetical protein
N9414_02846 [Nodularia spumigena CCY9414]
Length = 68
Score = 73.2 bits (178), Expect = 3e-11
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKSTPELRVACLTV 143
NLRQRRW+EL+KDYD+ I YHPGKANVVADALSRK+ +ACL+V
Sbjct: 20 NLRQRRWMELLKDYDVTIQYHPGKANVVADALSRKAVSMGSLACLSV 66
>emb|CAH67609.1| OSIGBa0145G11.8 [Oryza sativa Indica Group]
Length = 1470
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 919 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMV--PELREEIAQLN 976
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 977 LHI---VPRGQINTLDIQ 991
>gb|ABF97606.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 702
Score = 73.2 bits (178), Expect = 3e-11
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 NLRQRRWLELIKDYDLDICYHPGKANVVADALSRKS-TPELRVACLTVQPELQRQFVRGE 179
NLRQRRWLELIKDYDL++ YHPGKANVVADALSRKS LR+ + PEL+ + +
Sbjct: 236 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKSHCNHLRMEGMA--PELKEEIAQLN 293
Query: 180 IEVWCEKDQMMLNVMEIQ 233
+ + + +N ++IQ
Sbjct: 294 LHI---VPRGQINTLDIQ 308