BLASTX nr result
ID: Rheum21_contig00028152
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028152
(270 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006363374.1| PREDICTED: DNA repair protein RAD51 homolog ... 89 6e-16
ref|XP_004294616.1| PREDICTED: DNA repair protein RAD51 homolog ... 89 8e-16
gb|EMJ09018.1| hypothetical protein PRUPE_ppa023822mg [Prunus pe... 87 2e-15
gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair prot... 86 7e-15
ref|NP_172254.2| DNA repair protein RAD51 homolog 4 [Arabidopsis... 86 7e-15
ref|NP_001077479.1| DNA repair protein RAD51 homolog 4 [Arabidop... 86 7e-15
gb|ABE02571.1| RAD51D splice variant b [Arabidopsis thaliana] gi... 86 7e-15
gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana] gi... 86 7e-15
ref|XP_006590288.1| PREDICTED: uncharacterized protein LOC100780... 85 9e-15
ref|XP_006590287.1| PREDICTED: uncharacterized protein LOC100780... 85 9e-15
ref|NP_001242445.1| uncharacterized protein LOC100780427 [Glycin... 85 9e-15
ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog ... 85 1e-14
ref|XP_004251314.1| PREDICTED: DNA repair protein RAD51 homolog ... 84 1e-14
gb|ESW04110.1| hypothetical protein PHAVU_011G067900g [Phaseolus... 84 2e-14
ref|XP_006417773.1| hypothetical protein EUTSA_v10008243mg [Eutr... 84 2e-14
gb|EMJ07684.1| hypothetical protein PRUPE_ppa019062mg, partial [... 84 2e-14
ref|XP_003563123.1| PREDICTED: DNA repair protein RAD51 homolog ... 84 3e-14
gb|EOY34160.1| Tetratricopeptide repeat-like superfamily protein... 83 3e-14
gb|ACH42255.1| RAD51D protein [Triticum aestivum] 83 3e-14
emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera] 83 4e-14
>ref|XP_006363374.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Solanum
tuberosum]
Length = 314
Score = 89.0 bits (219), Expect = 6e-16
Identities = 48/91 (52%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV--NTH 177
GLR+G++TELVG SSSGKTQ+CL AA +VA + +VF+D+GNSFS RVA++V +
Sbjct: 103 GLREGYLTELVGTSSSGKTQICLQAASAVAK-SWGKIVFVDSGNSFSPKRVAQIVTQTSD 161
Query: 178 ATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
+A + ++ QVM +I C+ VFD+FTLF+V
Sbjct: 162 LSAYEVDKSLQQVMKNIVCFSVFDIFTLFEV 192
>ref|XP_004294616.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Fragaria vesca
subsp. vesca]
Length = 316
Score = 88.6 bits (218), Expect = 8e-16
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV---NT 174
GLR+G +TELVG SSSGKTQVCLLAA ++AS VV++DTGNSFS R+A+ V +
Sbjct: 103 GLREGQLTELVGPSSSGKTQVCLLAASNLASQHMGTVVYLDTGNSFSTQRIAEFVGRFSN 162
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
H ++ + + M++I C+ VFD+FT+F+V
Sbjct: 163 HTFSQAGQRNFQKAMNNILCHSVFDIFTMFNV 194
>gb|EMJ09018.1| hypothetical protein PRUPE_ppa023822mg [Prunus persica]
Length = 312
Score = 87.4 bits (215), Expect = 2e-15
Identities = 46/91 (50%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
GLR+G +TE+VG SS GKTQVCLLAA +VA+ VV++DTGNSFS R+A+ V A
Sbjct: 103 GLREGQLTEIVGPSSCGKTQVCLLAASNVATKQMGNVVYLDTGNSFSPQRIAQFVGHIAG 162
Query: 184 AKDPRI--TIGQVMSSISCYHVFDVFTLFDV 270
+ ++ ++M+SI C+ VFD+FT+F+V
Sbjct: 163 CAFDEVIPSVLEIMNSIVCHSVFDIFTMFNV 193
>gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair protein RAD51 homolog 4 (TRAD)
from Homo sapiens gi|6174940 [Arabidopsis thaliana]
Length = 285
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ C+ AA SVA V+++DTGNSFSA R+A+ + + +
Sbjct: 81 GFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSD 140
Query: 184 AKDPRITIGQ-VMSSISCYHVFDVFTLFD 267
A T+GQ VMS I C+ V+D++TLFD
Sbjct: 141 A-----TLGQKVMSRILCHTVYDIYTLFD 164
>ref|NP_172254.2| DNA repair protein RAD51 homolog 4 [Arabidopsis thaliana]
gi|83305360|sp|Q9LQQ2.2|RA51D_ARATH RecName: Full=DNA
repair protein RAD51 homolog 4; Short=AtRAD51D
gi|57283103|emb|CAD70703.1| putative DNA recombination
protein [Arabidopsis thaliana]
gi|58430742|dbj|BAD89165.1| AtRAD51D [Arabidopsis
thaliana] gi|90969171|gb|ABE02570.1| RAD51D splice
variant a [Arabidopsis thaliana]
gi|90969179|gb|ABE02658.1| RAD51D splice variant a
[Arabidopsis thaliana] gi|332190052|gb|AEE28173.1| DNA
repair protein RAD51-like 4 [Arabidopsis thaliana]
Length = 322
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ C+ AA SVA V+++DTGNSFSA R+A+ + + +
Sbjct: 103 GFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSD 162
Query: 184 AKDPRITIGQ-VMSSISCYHVFDVFTLFD 267
A T+GQ VMS I C+ V+D++TLFD
Sbjct: 163 A-----TLGQKVMSRILCHTVYDIYTLFD 186
>ref|NP_001077479.1| DNA repair protein RAD51 homolog 4 [Arabidopsis thaliana]
gi|332190053|gb|AEE28174.1| DNA repair protein
RAD51-like 4 [Arabidopsis thaliana]
Length = 304
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ C+ AA SVA V+++DTGNSFSA R+A+ + + +
Sbjct: 85 GFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSD 144
Query: 184 AKDPRITIGQ-VMSSISCYHVFDVFTLFD 267
A T+GQ VMS I C+ V+D++TLFD
Sbjct: 145 A-----TLGQKVMSRILCHTVYDIYTLFD 168
>gb|ABE02571.1| RAD51D splice variant b [Arabidopsis thaliana]
gi|90969181|gb|ABE02659.1| RAD51D splice variant b
[Arabidopsis thaliana]
Length = 232
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ C+ AA SVA V+++DTGNSFSA R+A+ + + +
Sbjct: 103 GFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSD 162
Query: 184 AKDPRITIGQ-VMSSISCYHVFDVFTLFD 267
A T+GQ VMS I C+ V+D++TLFD
Sbjct: 163 A-----TLGQKVMSRILCHTVYDIYTLFD 186
>gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana]
gi|90969191|gb|ABE02664.1| RAD51D splice variant g
[Arabidopsis thaliana]
Length = 266
Score = 85.5 bits (210), Expect = 7e-15
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ C+ AA SVA V+++DTGNSFSA R+A+ + + +
Sbjct: 103 GFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFICSSSD 162
Query: 184 AKDPRITIGQ-VMSSISCYHVFDVFTLFD 267
A T+GQ VMS I C+ V+D++TLFD
Sbjct: 163 A-----TLGQKVMSRILCHTVYDIYTLFD 186
>ref|XP_006590288.1| PREDICTED: uncharacterized protein LOC100780427 isoform X2 [Glycine
max]
Length = 319
Score = 85.1 bits (209), Expect = 9e-15
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV---NT 174
GLR+G +TELVG SSSGKTQ CLL+A +V + +S V+++DTGNSFS R+A V +
Sbjct: 97 GLREGQLTELVGSSSSGKTQACLLSASTVVAKHKSSVIYLDTGNSFSPQRIAHFVGQSSG 156
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
H + +V+ I CY VFDV+ +FDV
Sbjct: 157 HIFGNQADHMLKKVLDRIICYSVFDVYQMFDV 188
>ref|XP_006590287.1| PREDICTED: uncharacterized protein LOC100780427 isoform X1 [Glycine
max]
Length = 321
Score = 85.1 bits (209), Expect = 9e-15
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV---NT 174
GLR+G +TELVG SSSGKTQ CLL+A +V + +S V+++DTGNSFS R+A V +
Sbjct: 103 GLREGQLTELVGSSSSGKTQACLLSASTVVAKHKSSVIYLDTGNSFSPQRIAHFVGQSSG 162
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
H + +V+ I CY VFDV+ +FDV
Sbjct: 163 HIFGNQADHMLKKVLDRIICYSVFDVYQMFDV 194
>ref|NP_001242445.1| uncharacterized protein LOC100780427 [Glycine max]
gi|255635337|gb|ACU18022.1| unknown [Glycine max]
Length = 325
Score = 85.1 bits (209), Expect = 9e-15
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV---NT 174
GLR+G +TELVG SSSGKTQ CLL+A +V + +S V+++DTGNSFS R+A V +
Sbjct: 103 GLREGQLTELVGSSSSGKTQACLLSASTVVAKHKSSVIYLDTGNSFSPQRIAHFVGQSSG 162
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
H + +V+ I CY VFDV+ +FDV
Sbjct: 163 HIFGNQADHMLKKVLDRIICYSVFDVYQMFDV 194
>ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Cucumis
sativus] gi|449518921|ref|XP_004166484.1| PREDICTED: DNA
repair protein RAD51 homolog 4-like [Cucumis sativus]
Length = 314
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
GLR+G +TE+VG SSSGKTQVCL AA +VA ++ V ++DTGNSFS R++ V T
Sbjct: 104 GLREGQLTEIVGPSSSGKTQVCLRAASNVAKNYKAEVFYMDTGNSFSPQRISGFVCT--- 160
Query: 184 AKDPRITIGQVMSSISCYHVFDVFTLFDV 270
+ + +VM+SISC+ VF++F LFDV
Sbjct: 161 --SEQSMLQRVMTSISCHSVFNIFALFDV 187
>ref|XP_004251314.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Solanum
lycopersicum]
Length = 314
Score = 84.3 bits (207), Expect = 1e-14
Identities = 45/89 (50%), Positives = 64/89 (71%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
GLR+G++TELVG SSSGKTQ+CL AA +VA + ++F+D+GNSFS RVA++V T
Sbjct: 103 GLREGYLTELVGTSSSGKTQICLQAASAVAK-SWGKIIFLDSGNSFSPKRVAQIV----T 157
Query: 184 AKDPRITIGQVMSSISCYHVFDVFTLFDV 270
+ +VM++I C+ VFD+F LF+V
Sbjct: 158 QTSDLSALQEVMNNIVCFSVFDIFPLFEV 186
>gb|ESW04110.1| hypothetical protein PHAVU_011G067900g [Phaseolus vulgaris]
Length = 318
Score = 84.0 bits (206), Expect = 2e-14
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLV-NTHA 180
GLR+G +TELVG SSSGKTQ CLL A +VA +S V+++DTGNSFS R+A+ V + A
Sbjct: 103 GLREGQLTELVGSSSSGKTQACLLTASTVAK-HKSSVIYLDTGNSFSPHRIARFVGQSSA 161
Query: 181 TAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
+ + +V+ I CY VFD++ +FDV
Sbjct: 162 SDNQAAHKLKEVLDRIICYSVFDIYQMFDV 191
>ref|XP_006417773.1| hypothetical protein EUTSA_v10008243mg [Eutrema salsugineum]
gi|557095544|gb|ESQ36126.1| hypothetical protein
EUTSA_v10008243mg [Eutrema salsugineum]
Length = 316
Score = 84.0 bits (206), Expect = 2e-14
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVNTHAT 183
G R+G +TELVG SSSGKTQ+C+ AA SVA V ++DTGNSFSA R+A+ + +
Sbjct: 103 GFREGQLTELVGPSSSGKTQICMQAAASVAEKQTGRVFYVDTGNSFSARRIAQFICATSD 162
Query: 184 AKDPRITIGQVMSSISCYHVFDVFTLFD 267
A + +V+S ISC+ V+D+FT+FD
Sbjct: 163 AALGK----KVLSRISCHTVYDIFTMFD 186
>gb|EMJ07684.1| hypothetical protein PRUPE_ppa019062mg, partial [Prunus persica]
Length = 308
Score = 84.0 bits (206), Expect = 2e-14
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVN---T 174
GLR+G +TELVG SS GKTQVCLLAA +VA+ VV++DTGNSFS R+A+ V
Sbjct: 103 GLREGQLTELVGPSSCGKTQVCLLAASNVATKHMGNVVYLDTGNSFSPQRIAQFVGHIAG 162
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
A + + ++M+ I C+ VFD+FT+F+V
Sbjct: 163 RAFDEAGKRIFQRIMNGIVCHSVFDIFTMFNV 194
>ref|XP_003563123.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Brachypodium
distachyon]
Length = 262
Score = 83.6 bits (205), Expect = 3e-14
Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVN--TH 177
GLRKG +TE+ G SSSGKTQVCL +A VA+ V+++DT NSFS R+A +V+
Sbjct: 46 GLRKGHLTEITGQSSSGKTQVCLYSASHVAARHMGVVLYLDTSNSFSPSRIAHIVDELPI 105
Query: 178 ATAKDPR-ITIGQVMSSISCYHVFDVFTLFDV 270
+ K+P+ + + +VMSSI C VFDVF LF+V
Sbjct: 106 SLIKEPKDMRLKRVMSSIVCESVFDVFALFEV 137
>gb|EOY34160.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
Length = 951
Score = 83.2 bits (204), Expect = 3e-14
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAK---LVNT 174
G+R G +TELVG SSSGKTQVCL A +V S VV++DTGNSFS R+A + N
Sbjct: 103 GIRVGQLTELVGPSSSGKTQVCLQTASNVVSNHMGTVVYLDTGNSFSPQRIAHFLGVTND 162
Query: 175 HATAKDPRITIGQVMSSISCYHVFDVFTLFDV 270
A+++ + +VMS+I C+ VFD+F +FDV
Sbjct: 163 LASSEIKNQILQRVMSNILCHSVFDIFEMFDV 194
>gb|ACH42255.1| RAD51D protein [Triticum aestivum]
Length = 246
Score = 83.2 bits (204), Expect = 3e-14
Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVN--TH 177
GLRKG +TE+ G SSSGKTQVCL +A VA+ V+++DT NSFS R+A +++
Sbjct: 28 GLRKGQLTEITGQSSSGKTQVCLYSAAHVAARHMGAVLYLDTSNSFSPSRIAHILDELPI 87
Query: 178 ATAKDPR-ITIGQVMSSISCYHVFDVFTLFDV 270
+ K+P+ + + +VMSSI C VFD+F LF+V
Sbjct: 88 SLIKEPKDMRLKRVMSSIICESVFDIFALFEV 119
>emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 82.8 bits (203), Expect = 4e-14
Identities = 48/92 (52%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 GLRKGFVTELVGLSSSGKTQVCLLAAVSVASGTRSGVVFIDTGNSFSACRVAKLVN--TH 177
GL G +TELVG SSSGKTQ+CL A VA+ GVVFIDTGNSFS R+A +N
Sbjct: 103 GLCVGHLTELVGPSSSGKTQICLKVASGVATRYMGGVVFIDTGNSFSPLRIAHFINQIPD 162
Query: 178 ATAKDPRITI-GQVMSSISCYHVFDVFTLFDV 270
K+ + I +VMS I C+ VFD+F + DV
Sbjct: 163 TIFKEVKQNILEKVMSQILCHSVFDIFAMLDV 194