BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00026902
         (620 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   137   2e-30
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              134   2e-29
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   134   2e-29
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   134   2e-29
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624...   123   4e-26
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A...   122   6e-26
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A...   121   2e-25
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...   120   2e-25
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A...   118   2e-24
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   112   6e-23
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...   110   3e-22
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A...   107   2e-21
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]               105   1e-20
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]             103   4e-20
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]             103   5e-20
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A...   100   3e-19
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob...   100   3e-19
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas...   100   3e-19
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             100   4e-19
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A...    98   2e-18

>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score =  137 bits (346), Expect = 2e-30
 Identities = 66/204 (32%), Positives = 106/204 (51%)
 Frame = +1

Query: 1   DDLASKVSCYWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYS 180
           ++   +V+ YWI+G GW+   +   LP  +  +L A+ I       D +SW  + NG ++
Sbjct: 263 EERGQRVADYWIEGVGWDMERIAVFLPEFMRQRLLAVVIGGCYGVEDKMSWVGTENGRFT 322

Query: 181 VASAYDLIHCLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTED 360
           V+SAY +        +  S  F+ +WR++VP++   F+WL     +L+N ER RRHM + 
Sbjct: 323 VSSAYLIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADS 382

Query: 361 DSCLRCPDSPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGS 540
           D C  C  + ES I++ RDC     +W  + P    + FF+ +   W+  NL   S    
Sbjct: 383 DVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLKERS-DSE 441

Query: 541 HNDWSNVFAMSLWWLWKWRNNLVF 612
              W  +FA+++WW WKWR   VF
Sbjct: 442 RRSWPTLFALTVWWGWKWRCGYVF 465


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  134 bits (338), Expect = 2e-29
 Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
 Frame = +1

Query: 31  WIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHC 210
           WI GRGW+   + P   N   L+L A+ +       D +SW  S++G++SV SAY+++  
Sbjct: 326 WIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTV 385

Query: 211 LN-PRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDS 387
              PR  + S  FN +W++ VP++V TF+WL     +++  ER RRH++  + C  C   
Sbjct: 386 DEVPRPNMAS-FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGG 444

Query: 388 PESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTS-CKGSHNDWSNVF 564
            ES +++ RDC     +W  + P    QGFF  +   W+  NL   S C+     WS +F
Sbjct: 445 VESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDI--PWSTIF 502

Query: 565 AMSLWWLWKWRNNLVF 612
           A+ +WW WKWR   +F
Sbjct: 503 AVIIWWGWKWRCGNIF 518


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  134 bits (338), Expect = 2e-29
 Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
 Frame = +1

Query: 31  WIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHC 210
           WI GRGW+   + P   N   L+L A+ +       D +SW  S++G++SV SAY+++  
Sbjct: 217 WIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTV 276

Query: 211 LN-PRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDS 387
              PR  + S  FN +W++ VP++V TF+WL     +++  ER RRH++  + C  C   
Sbjct: 277 DEVPRPNMAS-FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGG 335

Query: 388 PESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTS-CKGSHNDWSNVF 564
            ES +++ RDC     +W  + P    QGFF  +   W+  NL   S C+     WS +F
Sbjct: 336 VESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDI--PWSTIF 393

Query: 565 AMSLWWLWKWRNNLVF 612
           A+ +WW WKWR   +F
Sbjct: 394 AVIIWWGWKWRCGNIF 409


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  134 bits (338), Expect = 2e-29
 Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 1/191 (0%)
 Frame = +1

Query: 28   YWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIH 207
            YW+ G GWN  +L   LP  +  +L ++ +     N D ISW  +++G ++V SAY L+ 
Sbjct: 831  YWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQ 890

Query: 208  C-LNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPD 384
              +  R  + S  FN IW+L+ P++V  FIWL  +  I++N+ER RRH++E+  C  C  
Sbjct: 891  GDVGDRPNMGS-FFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNG 949

Query: 385  SPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVF 564
            + E+ +++ RDC   + +W  L P   +  FF  +   W+ +N+     KG    W  +F
Sbjct: 950  AEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMD--PVKGI---WPTLF 1004

Query: 565  AMSLWWLWKWR 597
             M +WW WKWR
Sbjct: 1005 GMGIWWAWKWR 1015


>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
          Length = 1635

 Score =  123 bits (309), Expect = 4e-26
 Identities = 63/181 (34%), Positives = 92/181 (50%)
 Frame = +1

Query: 73   LLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPRYEVDSPIFNA 252
            LLPN ILLK+A++      H  DS  WG S NG +SV SAY+L+   +P    D   +  
Sbjct: 1432 LLPNNILLKIASVHPPTASHGADSFFWGASSNGNFSVKSAYELLD--DPIGNGDHSFWCL 1489

Query: 253  IWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFINLFRDCHGSK 432
            +W    P  +  F+WL + G + +  E  RRH+ +   C RC    E  ++  RDC  ++
Sbjct: 1490 VWSWKGPHSIRVFLWLLLHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTAR 1549

Query: 433  QVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWWLWKWRNNLVF 612
            +VW  L P +    FF    + W++ NL       S   W   F +++W LW WRNN +F
Sbjct: 1550 RVWSHLLPNNYPHSFFLCPLSDWLQMNLMRKKNNTSQEYWRVCFGVAVWRLWFWRNNFLF 1609

Query: 613  N 615
            N
Sbjct: 1610 N 1610


>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 491

 Score =  122 bits (307), Expect = 6e-26
 Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
 Frame = +1

Query: 31  WIDGRG-WN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIH 207
           ++D  G W       LLPN I+L++AA+         D   W  S+ G++SV SAY  I 
Sbjct: 206 FVDANGNWRWDSFEHLLPNCIILRIAAVQPPMEGKGDDKFFWANSQRGDFSVKSAYMAI- 264

Query: 208 CLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDS 387
                  ++   +N  W+   P +V TFIWLA+   + +  E  RRH+  D +C  C  +
Sbjct: 265 -TKNEIGIEHSRWNIAWKWKGPPRVQTFIWLALHDRLKTKAEIGRRHIHIDWTCDHCGVA 323

Query: 388 PESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFA 567
            E+ +++ RDC  +K++W  L P    Q FF +N   W+  NL    C  +  +WS +F 
Sbjct: 324 SETTLHVLRDCFMAKRLWNQLLPSEWRQVFFSSNLLDWLTLNLRSNQCMENGLEWSCMFG 383

Query: 568 MSLWWLWKWRNNLVFNR 618
           +++W LW WRN   FN+
Sbjct: 384 VAIWRLWFWRNQYQFNK 400


>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 411

 Score =  121 bits (303), Expect = 2e-25
 Identities = 57/196 (29%), Positives = 105/196 (53%)
 Frame = +1

Query: 28  YWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIH 207
           +W D  GWN  +L  +LP+ +++++ ++    G   HD + W  + NG++SV SAY+   
Sbjct: 8   FWCD-TGWNIPLLKSVLPDHVVMQIISVPSGFGVSGHDKLIWNATANGKFSVKSAYNSFF 66

Query: 208 CLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDS 387
                  V +P++  +W+L  P K+ TF+W  +   IL+N++R RR  +   SC  C ++
Sbjct: 67  ---DSAGVSNPLWTHLWKLNCPPKLKTFMWYVLHQKILTNVQRVRRGFSTIASCPICKNA 123

Query: 388 PESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFA 567
            E+ ++L RDC  S+ +W  +  P      F  ++  W+ +         ++  W N+F 
Sbjct: 124 DETLLHLLRDCPRSQAIWNSILSPGSITNSFSLDWNGWICAQFHCHVVIKNNIQWCNLFV 183

Query: 568 MSLWWLWKWRNNLVFN 615
              W++WKWRN ++F+
Sbjct: 184 FVCWFIWKWRNKVIFD 199


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score =  120 bits (302), Expect = 2e-25
 Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 1/201 (0%)
 Frame = +1

Query: 13  SKVSCYWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASA 192
           ++V   W  GRGW    + P +   I L+L A+ + N     D +SWG+S +G+++V SA
Sbjct: 390 ARVCDLWQHGRGWLLENIAPYVAPDIRLRLKAVVVDNITGVRDRLSWGESLDGKFTVKSA 449

Query: 193 YD-LIHCLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSC 369
           Y  L+    PR ++ S +++ +W+++ P++V  F+WL V   I++NMER+RRH+++   C
Sbjct: 450 YSSLMKDNTPRSDL-SRMYDRVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGIC 508

Query: 370 LRCPDSPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHND 549
             C    E+ I++ RDC     +W  + P      FF      WV  NL G S K     
Sbjct: 509 QVCKGGDETIIHILRDCPAMYGIWTRIIPRRKRGTFFTQTLLEWVYDNL-GDSGKVDGCP 567

Query: 550 WSNVFAMSLWWLWKWRNNLVF 612
           WS V      W WKWR   VF
Sbjct: 568 WSCV-----RWGWKWRCGNVF 583


>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 719

 Score =  118 bits (295), Expect = 2e-24
 Identities = 55/196 (28%), Positives = 104/196 (53%)
 Frame = +1

Query: 28   YWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIH 207
            +W D   WN ++L  +LP+ +++++ ++    G   HD + W  + NG++SV S Y+   
Sbjct: 495  FWCD-TSWNISLLKSVLPDHVVMQIISVPSGFGVSGHDKLIWNATANGKFSVKSTYNSFF 553

Query: 208  CLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDS 387
                   V +P++  +W+L  P K+ TF+W  +   IL+N++R RR  +   SC  C ++
Sbjct: 554  ---DSAGVSNPLWTHLWKLNCPPKLKTFMWSVLHQKILTNVQRVRRGFSTIASCPICKNA 610

Query: 388  PESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFA 567
             E+ ++L RDC  S+ +W  +  P      F  ++  W+ +         ++  W N+F 
Sbjct: 611  DETLLHLLRDCPRSQAIWNSILRPGSITNSFSLDWNGWISAQFHCHVVIKNNIQWCNLFV 670

Query: 568  MSLWWLWKWRNNLVFN 615
               W++WKWRN ++F+
Sbjct: 671  FVCWFIWKWRNKVIFD 686


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  112 bits (281), Expect = 6e-23
 Identities = 59/191 (30%), Positives = 100/191 (52%)
 Frame = +1

Query: 46   GWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPRY 225
            GW   +    LP   L  +AA  +++ +   D I W  S +G +++ SA ++        
Sbjct: 978  GWKVDVFANYLPEATLKLIAAHELIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELAN 1037

Query: 226  EVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFIN 405
                P ++A+W++  P++V  FIWLA++  +++N  R  R +T+D  CL C +  E+  +
Sbjct: 1038 MDAHPKWSAVWKIPTPQRVRFFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDH 1097

Query: 406  LFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWWL 585
            + R C  ++ +W  L     +    + N   W+  NLS  +  GS  +W  VFA+S WWL
Sbjct: 1098 ILRRCPVARILWRKLGMLGEHNR-EEINLGSWITKNLSADTMMGS--EWLRVFAVSCWWL 1154

Query: 586  WKWRNNLVFNR 618
            W+WRN+  FNR
Sbjct: 1155 WRWRNDRCFNR 1165


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score =  110 bits (275), Expect = 3e-22
 Identities = 55/158 (34%), Positives = 86/158 (54%)
 Frame = +1

Query: 139  DSISWGKSRNGEYSVASAYDLIHCLNPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCI 318
            D +SW  ++NG+++V SAY+L+        +       IW+L+ P++V  FIWL     I
Sbjct: 609  DELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVI 668

Query: 319  LSNMERKRRHMTEDDSCLRCPDSPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAV 498
            ++N+ER RRH+++  +C  C  + ES +++ RDC     +W  L P      FF  +   
Sbjct: 669  MTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFF--SQFE 726

Query: 499  WVRSNLSGTSCKGSHNDWSNVFAMSLWWLWKWRNNLVF 612
            W+ +NL     KG   DW  +F+M +WW WKWR   VF
Sbjct: 727  WLFTNLD--PAKG---DWPTLFSMGIWWAWKWRCGDVF 759


>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 569

 Score =  107 bits (268), Expect = 2e-21
 Identities = 57/190 (30%), Positives = 94/190 (49%)
 Frame = +1

Query: 49  WN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPRYE 228
           W        LP+ I+L++AA+   + D   DS+ W  S++G ++  SAY  +    P + 
Sbjct: 110 WYWDRFEQFLPSHIILQIAALHPPSPDKGTDSLFWAHSKSGRFTTHSAYLALSNDTPMH- 168

Query: 229 VDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFINL 408
            D  ++  +W    P+ V  F+W      + +  E  RRH+    SC RC    E  +++
Sbjct: 169 -DDRLWRMVWNWKGPQSVRIFLWQVFHDRLKTKAELARRHIPVSTSCDRCGAVNEDAMHV 227

Query: 409 FRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWWLW 588
            RDC   K  W  + P +  Q FF++    W+R+N+      GS ++W+  F ++LW LW
Sbjct: 228 LRDCALVKLFWLLILPANKRQQFFNSRLQEWLRTNVGIVGRLGSVSNWAIFFGIALWRLW 287

Query: 589 KWRNNLVFNR 618
            WRN   FN+
Sbjct: 288 FWRNQFFFNQ 297


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score =  105 bits (262), Expect = 1e-20
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
 Frame = +1

Query: 49  WN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLN-PRY 225
           W+   L+  LPN ++L++            D   WG+S +G+++VAS YD +  L+ P  
Sbjct: 259 WDYDKLSYCLPNEVVLQVVQTMPPTVIIAQDMPYWGESASGQFTVASVYDYLRQLSSPAK 318

Query: 226 EVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFIN 405
              S I+   W+    ++V TF++  + G +L+N ER  R +T D  C +C    E+  +
Sbjct: 319 ARPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTH 378

Query: 406 LFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWWL 585
           + RDC  +  +W  + P      FF      W+ SNL         N WS VF ++ W L
Sbjct: 379 VLRDCMVATSLWVKIIPQHEQNDFFTFPLREWLVSNLQKQQLI-LGNPWSVVFGLACWCL 437

Query: 586 WKWRNNLVF 612
           WKWRN +VF
Sbjct: 438 WKWRNGVVF 446


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  103 bits (257), Expect = 4e-20
 Identities = 61/191 (31%), Positives = 93/191 (48%)
 Frame = +1

Query: 43   RGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPR 222
            R W+   L  +LP  ++  + A  I       D +SW  S  G  +V+SAY LI      
Sbjct: 974  RRWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLI----AG 1029

Query: 223  YEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFI 402
            ++ D    + IWR    +K+  F+W  VK  ++ N+ERKRR + +  SC  C +  E+  
Sbjct: 1030 HDGDDRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLD 1089

Query: 403  NLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWW 582
            +LFR C  ++  W    PP  +Q     +   W+++  S     G   +WS +F   LW 
Sbjct: 1090 HLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYSTNWSLIFPYILWN 1149

Query: 583  LWKWRNNLVFN 615
            LWK RN LVF+
Sbjct: 1150 LWKARNRLVFD 1160


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  103 bits (256), Expect = 5e-20
 Identities = 61/191 (31%), Positives = 93/191 (48%)
 Frame = +1

Query: 43   RGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPR 222
            R W+   L  +LP  ++  + A  I       D +SW  S  G  +V+SAY LI      
Sbjct: 974  RRWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLI----AG 1029

Query: 223  YEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFI 402
            ++ D    + IWR    +K+  F+W  VK  ++ N+ERKRR + +  SC  C +  E+  
Sbjct: 1030 HDGDDRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLD 1089

Query: 403  NLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWW 582
            +LFR C  ++  W    PP  +Q     +   W+++  S     G   +WS +F   LW 
Sbjct: 1090 HLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWN 1149

Query: 583  LWKWRNNLVFN 615
            LWK RN LVF+
Sbjct: 1150 LWKARNRLVFD 1160


>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 407

 Score =  100 bits (250), Expect = 3e-19
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
 Frame = +1

Query: 10  ASKVSCYWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVAS 189
           A+ V  +WI+  GW+   L  ++P  I+ K+  + I  G    D++ WG + NG++ V S
Sbjct: 223 AATVCDFWIED-GWDVHKLLDVVPFEIVNKIVNVPIDFGVSGSDTLIWGATANGKFFVKS 281

Query: 190 AYDLIHCLNPRYEVDSPI---FNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTED 360
           AY      N  +++ +P+   +N IWR+ +P K+ TF+W  +   +L+NM+R  R  T  
Sbjct: 282 AY------NSLFDMSAPLNPQWNYIWRMKIPPKLKTFLWTFLHKKLLTNMQRVTRGFTAS 335

Query: 361 DSCLRCPDSPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGS 540
             C  C  + ESF++LFRDC  S  +W     P      F  ++  W+++ L   S   +
Sbjct: 336 ALCPICQSADESFLHLFRDCPRSVLIWNAFVKPGSISQSFSLDWNGWIQAQLHCHSFTSN 395

Query: 541 HNDWSNVF 564
           +  W ++F
Sbjct: 396 NIRWCDLF 403


>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 1011

 Score =  100 bits (249), Expect = 3e-19
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 1/204 (0%)
 Frame = +1

Query: 4    DLASKVSCYWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSV 183
            +L ++V  Y +    W+   LT +LP  ++ ++  I       + D   W  S  G +++
Sbjct: 632  NLRARVKDYIMPNGDWDKERLTSILPIEVVNQILCIIPPTLSASLDMPYWALSPYGYFTI 691

Query: 184  ASAYDLIHCL-NPRYEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTED 360
            +S Y  +  L +   E ++ ++  +W L  P +VC F++  +   IL+N ER RR M+ D
Sbjct: 692  SSTYKHLGSLADSTREENNKMWRLVWDLRGPHRVCLFLFFCLHKRILTNAERVRRKMSSD 751

Query: 361  DSCLRCPDSPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGS 540
             SC  C    E+ +++ RDC   + +W  + P S    FF      W+ SNL+  +    
Sbjct: 752  ASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGINQFFQIPLIDWLSSNLNLKNLYVF 811

Query: 541  HNDWSNVFAMSLWWLWKWRNNLVF 612
               W+ V  ++ W+ WKWRN  +F
Sbjct: 812  DVPWNIVLGITCWYTWKWRNLFIF 835


>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
           Polynucleotidyl transferase, Ribonuclease H fold-like
           protein [Theobroma cacao]
          Length = 616

 Score =  100 bits (249), Expect = 3e-19
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 1/196 (0%)
 Frame = +1

Query: 28  YWIDGRGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIH 207
           + +D   WN   L   L + ++ K+            D+  W  S +G  +VAS Y+++ 
Sbjct: 267 FLLDTGEWNHEKLATCLHSDLVNKILMFLPPLLSFKPDTPYWASSASGVCTVASTYEVLR 326

Query: 208 CLNPRY-EVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPD 384
              P Y    S  +   W+   P+++ TF+   + G +L+N+E +RR+M+   +C  C  
Sbjct: 327 EDYPNYIGQQSRKWAIAWKWDGPQRIRTFLMQCLHGKLLTNLECRRRNMSSSATCALCSV 386

Query: 385 SPESFINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVF 564
           S ES ++L RDC  SK+VW  L     Y  FFD   + W+ +NL   +       W  +F
Sbjct: 387 SDESVLHLLRDCPHSKEVWLKLGSRMGYGNFFDLLLSDWLLTNLKNYNVCVDGIPWVILF 446

Query: 565 AMSLWWLWKWRNNLVF 612
             + W++WKWRN  VF
Sbjct: 447 GFTCWYIWKWRNVKVF 462


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  100 bits (248), Expect = 4e-19
 Identities = 61/191 (31%), Positives = 92/191 (48%)
 Frame = +1

Query: 43   RGWN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPR 222
            R W+   L  +LP  ++  + A  I       D  SW  S  G  +V+SAY LI      
Sbjct: 1506 RRWDTGALHNILPINMIDMVRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSLI----AG 1561

Query: 223  YEVDSPIFNAIWRLLVPKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPESFI 402
            ++ D    + IWR    +K+  F+W  VK  ++ N+ERKRR + +  SC  C +  E+  
Sbjct: 1562 HDGDGRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLD 1621

Query: 403  NLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSLWW 582
            +LFR C  ++  W    PP  +Q     +   W+++  S     G   +WS +F   LW 
Sbjct: 1622 HLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWN 1681

Query: 583  LWKWRNNLVFN 615
            LWK RN LVF+
Sbjct: 1682 LWKARNRLVFD 1692


>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 684

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
 Frame = +1

Query: 49  WN*TMLTPLLPNVILLKLAAITIMNGDHNHDSISWGKSRNGEYSVASAYDLIHCLNPRYE 228
           WN +    L PN +LL++A++   N     D + W     G ++V SAY+ +       +
Sbjct: 318 WNWSAFEHLFPNSVLLQIASVMPPNHLLGVDKLFWRYEPRGNFTVRSAYEAL------CQ 371

Query: 229 VDSPIFNAIWRLLV----PKKVCTFIWLAVKGCILSNMERKRRHMTEDDSCLRCPDSPES 396
           +DS      W+L      P+ V  F+W A+   + +  E  RRH+     C RC    E 
Sbjct: 372 LDSNDTGTAWKLAWTWKGPQAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIED 431

Query: 397 FINLFRDCHGSKQVWCDLCPPSLYQGFFDNNYAVWVRSNLSGTSCKGSHNDWSNVFAMSL 576
            I++ RDC    +VW  L P   +  FF +    W+ +NL       S + W  +F +++
Sbjct: 432 VIHVLRDCQCIMRVWLRLVPARNHLSFFQSTLRDWITANLQNKWKIASPSTWECIFGVAI 491

Query: 577 WWLWKWRNNLV 609
           W LW WRN+ +
Sbjct: 492 WRLWFWRNHFM 502