BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00026487
         (748 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   233   5e-59
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]   230   3e-58
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]   229   6e-58
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   229   6e-58
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   228   1e-57
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   226   5e-57
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   226   5e-57
gb|AAU90262.1| integrase core domain containing protein [Oryza s...   226   6e-57
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]   226   8e-57
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   226   8e-57
emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]   225   1e-56
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  225   1e-56
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   225   1e-56
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   224   2e-56
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   223   4e-56
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   223   5e-56
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc...   223   5e-56
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...   223   5e-56
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     223   7e-56
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc...   222   9e-56

>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  233 bits (594), Expect = 5e-59
 Identities = 123/250 (49%), Positives = 154/250 (61%), Gaps = 3/250 (1%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKF---FSTQIKYIQTDGGTEFTPLK 171
            Y+  +D FS+F W+F L  KS   + + TF+NF T+    F  +IK +QTD G EF   +
Sbjct: 602  YIHFVDAFSRFSWIFLLRNKS---EAIKTFVNFKTQVELQFDLKIKSLQTDWGGEFRAFQ 658

Query: 172  PIFTQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLI 351
                + GI HR++CP++ QQNG  E  HR IV+ GLTLL  ASLPL FWD +F T +YL 
Sbjct: 659  SYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLS 718

Query: 352  NRLPTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSP 531
            NRLPT ILH+K P E+LF + PDYS L+VFGC CFPNLRPY  HKL +RS    FLGYS 
Sbjct: 719  NRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSL 778

Query: 532  NHRGYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPPLAQLPPISHLLPATSPPP 711
             H+GY C      R YIS DVIF+E  FPY  T             P  SHL P+ S PP
Sbjct: 779  KHKGYKCMS-SNGRVYISHDVIFNETSFPYSKTIQVSSCLLSTVS-PSTSHLSPSAS-PP 835

Query: 712  FVGPSIVSDP 741
             + P+++  P
Sbjct: 836  VLSPTMLPTP 845


>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
          Length = 1211

 Score =  230 bits (587), Expect = 3e-58
 Identities = 119/250 (47%), Positives = 154/250 (61%), Gaps = 3/250 (1%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKF---FSTQIKYIQTDGGTEFTPLK 171
            Y+  +D FS+F W+F L  KS   + + TF+NF T+    F ++IK +QT+ G EF   +
Sbjct: 423  YIHFVDVFSRFSWIFLLRNKS---EAIKTFVNFKTQVELQFDSKIKSLQTNWGGEFRAFQ 479

Query: 172  PIFTQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLI 351
                + GI HR++CP + QQNG +E  HR IV+ GLTLL   SLPL FWD +F   +YL 
Sbjct: 480  SYLAENGIVHRVSCPXTQQQNGVVEXKHRTIVEHGLTLLHTTSLPLKFWDESFRIVVYLS 539

Query: 352  NRLPTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSP 531
            NRLPT +LH+K P E+LF + P+YS L+VFGC CFPNLRPY  HKL + S    FLGYS 
Sbjct: 540  NRLPTVVLHHKCPIEVLFKSIPBYSFLKVFGCSCFPNLRPYNTHKLQYXSEECTFLGYSL 599

Query: 532  NHRGYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPPLAQLPPISHLLPATSPPP 711
             H+GY C      R YISRDVIF+E  FPY  T       P     P  SHL P+ S PP
Sbjct: 600  KHKGYXCMS-SNGRVYISRDVIFNETSFPYSKTIQASSCLPSTVS-PFTSHLSPSAS-PP 656

Query: 712  FVGPSIVSDP 741
             + P+++  P
Sbjct: 657  ILSPTMLPTP 666


>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
          Length = 1334

 Score =  229 bits (585), Expect = 6e-58
 Identities = 118/253 (46%), Positives = 151/253 (59%), Gaps = 5/253 (1%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            +L  IDD+S+  W++ LS K    +   TF         T IK IQ+D G EF   KP  
Sbjct: 559  FLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQSDNGGEFLAFKPYL 618

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
               GI H+ +CP++ QQNG  E   R +V+TGL L+  + LP  +W YAF+TA+YLIN L
Sbjct: 619  EAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLL 678

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P  +LH +SP + LF   P+Y  LRVFGCLCFP+LRPY  HKL +RST  +FLGY+P H+
Sbjct: 679  PAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHK 738

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPPLAQLPPI---SHLLPATSPPP 711
            GY+C D    R YISR+VIFHE  FP+ ++SP    +P L    P    S  L A S P 
Sbjct: 739  GYLCLDVSTNRIYISRNVIFHESSFPFQSSSPPSSPSPHLPSSTPALINSPSLSAPSSPA 798

Query: 712  FVGPSIVSD--PP 744
               P I SD  PP
Sbjct: 799  VSSPIITSDSXPP 811


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  229 bits (585), Expect = 6e-58
 Identities = 118/253 (46%), Positives = 151/253 (59%), Gaps = 5/253 (1%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            +L  IDD+S+  W++ LS K    +   TF         T IK IQ+D G EF   KP  
Sbjct: 559  FLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQSDNGGEFLAFKPYL 618

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
               GI H+ +CP++ QQNG  E   R +V+TGL L+  + LP  +W YAF+TA+YLIN L
Sbjct: 619  EAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLL 678

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P  +LH +SP + LF   P+Y  LRVFGCLCFP+LRPY  HKL +RST  +FLGY+P H+
Sbjct: 679  PAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHK 738

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPPLAQLPPI---SHLLPATSPPP 711
            GY+C D    R YISR+VIFHE  FP+ ++SP    +P L    P    S  L A S P 
Sbjct: 739  GYLCLDVSTNRIYISRNVIFHESSFPFQSSSPPSSPSPHLPSSTPALINSPSLSAPSSPA 798

Query: 712  FVGPSIVSD--PP 744
               P I SD  PP
Sbjct: 799  VSSPIITSDSXPP 811


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  228 bits (582), Expect = 1e-57
 Identities = 106/207 (51%), Positives = 139/207 (67%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDDFSKF W++ +  KS V      F     + F  +I  +QTD G E+  L   F
Sbjct: 530  YVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQVMVERQFDRKILAMQTDWGGEYQSLNSFF 589

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
            +++GI H ++CP++HQQNGS E  HR IV+ GL+LL HAS+PL FWD AF+ A YLINR+
Sbjct: 590  SKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRV 649

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ ++HN SP E LF   PDYS LR+FGC C+PNLRPY  HKL FRS   +FLG+S  H+
Sbjct: 650  PSRVIHNISPLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHK 709

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPY 621
            G+ C +    R YISRDV+F E  FP+
Sbjct: 710  GFKCLEVSTGRIYISRDVVFDENIFPF 736


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  226 bits (577), Expect = 5e-57
 Identities = 116/238 (48%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ I D+SKF WL+ +  KS V +    F     + F+ +I  +Q+D G E+  L   F
Sbjct: 536  YVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQSDWGGEYEKLHSFF 595

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
            T++GI H ++CP++HQQNGS E  HR IV+ GLTLL ++S+PL FWD AF+ A+YLINR 
Sbjct: 596  TKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRT 655

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            PT +L   +P E LF+  PDYS LRVFGC C+P+LRPY  HKL FRS    FLGYS  H+
Sbjct: 656  PTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHK 715

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPT--TSPQRPITPPLAQLPPISHLLPATSPP 708
            G+ C D    R YISRDVIF E  FP+    T+    +   +  LP  SHLL  TS P
Sbjct: 716  GFKCLDPSTGRVYISRDVIFDETNFPFAKLHTNAGARLRSEILLLP--SHLLNPTSNP 771


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  226 bits (577), Expect = 5e-57
 Identities = 110/233 (47%), Positives = 148/233 (63%), Gaps = 2/233 (0%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDD+SKF W++ L  KS V      F +   + F+ +I  +QTD G E+  L   F
Sbjct: 534  YVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKIVAMQTDWGGEYQKLHSFF 593

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             ++GI H ++CP++HQQNGS E  HR IV+ GL LL ++S+PL FW  AF +A+YLINR 
Sbjct: 594  NKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRT 653

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ +LH+ SP E L    PDY+ LRVFGC C+PNLRPY  HKL FRST   FLGYS  H+
Sbjct: 654  PSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHK 713

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQ--RPITPPLAQLPPISHLLP 693
            G+ C D    R YISRDV+F E +FP+    P     +   +A +P ++  LP
Sbjct: 714  GFKCLDPSTGRVYISRDVVFDETQFPFTKLHPNVGAKLRAEIALVPELAASLP 766


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
            Group] gi|108710062|gb|ABF97857.1| retrotransposon
            protein, putative, Ty1-copia subclass, expressed [Oryza
            sativa Japonica Group]
          Length = 1021

 Score =  226 bits (576), Expect = 6e-57
 Identities = 107/207 (51%), Positives = 138/207 (66%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDDFSKF W++ L  KS V +  S F     + F+ +I  +Q+D G E+  L  IF
Sbjct: 451  YVSFIDDFSKFTWIYLLKKKSEVLQKFSEFQQLVERLFNRKIIAMQSDWGGEYEKLNAIF 510

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
            T++GI H ++CPY+HQQNGS E  HR IV+ GL+LL HAS+PL FWD AF TA YLINR 
Sbjct: 511  TKIGITHHVSCPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYLINRT 570

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ ++   +P E L +  P+YS LR FGC C+PNLRPY   KL FRS   +FLGYS  H+
Sbjct: 571  PSKVIQYSTPLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSNIHK 630

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPY 621
            G+ C D    R YISRDV+F E  FP+
Sbjct: 631  GFKCLDVATGRVYISRDVVFDENIFPF 657


>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
          Length = 1427

 Score =  226 bits (575), Expect = 8e-57
 Identities = 113/249 (45%), Positives = 149/249 (59%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            YL  ID F+K+VWLFP++ KS V  +   + +   K+F+  +  + TDGGTE+  LK  F
Sbjct: 531  YLIFIDYFTKYVWLFPMAYKSDVYTIFPKYKSMVEKYFNASLVTLYTDGGTEYKSLKSYF 590

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
               GI H+++ PY+ +  GS E  HR +V+TGL +L  ASLPL +W YAF  A YLINRL
Sbjct: 591  ISQGIQHQVSPPYTPEHVGSAERKHRHVVETGLAMLHKASLPLKYWSYAFLAAAYLINRL 650

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            PTPIL ++SP+E LF   P+Y  LR FGCLCFP +RPY  HKL  RS P +FLGYS  H 
Sbjct: 651  PTPILKHQSPFESLFQHMPNYDKLRAFGCLCFPWMRPYSDHKLDKRSKPCVFLGYSNTHN 710

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPPLAQLPPISHLLPATSPPPFVG 720
             Y C D    R YISR V F E +FP+ + +    +   ++     S  L A  P  FV 
Sbjct: 711  AYKCLDLSSNRVYISRHVQFIEHKFPFASNTTPTDLBQAISTWSSCSPALAAIQPSFFVV 770

Query: 721  PSIVSDPPY 747
            P+     P+
Sbjct: 771  PTSSKSFPH 779


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  226 bits (575), Expect = 8e-57
 Identities = 105/212 (49%), Positives = 139/212 (65%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ ID FS+F W++ L  KS V +    F     + F+ +I  +QTD G E+  L   F
Sbjct: 365  YVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKIISMQTDWGGEYQKLNTFF 424

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             ++GI H ++CP++HQQNGS E  HR IV+ GL+LL HASLPL FWD A+++ +YLINR+
Sbjct: 425  NKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRM 484

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            PT +L   SP E LF   PDY  LR FGC C+P+LRPY +HK+ FRS    FLGYSP H+
Sbjct: 485  PTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHK 544

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSP 636
            G+ C D    R YISRDV+F E  FP+   +P
Sbjct: 545  GFRCLDSSTGRIYISRDVVFDESVFPFAELNP 576


>emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]
          Length = 828

 Score =  225 bits (574), Expect = 1e-56
 Identities = 120/255 (47%), Positives = 152/255 (59%), Gaps = 7/255 (2%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            +L  IDD+S+  W++ LS K  V     TF         T IK IQ+D G EF   KP  
Sbjct: 462  FLIFIDDYSRHTWIYFLSTKDQVLHSFITFRKMIENQLHTTIKCIQSDNGGEFLAFKPYL 521

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
               GI H+ +CP++ QQNG  E   R +V+TGL L+  + LP  +W YAF+TA+YLIN L
Sbjct: 522  EAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLL 581

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P  +LH +SP + LF   P+Y  LRVFGCLCFP+LRPY  HKL +RST  +FLGY+P H 
Sbjct: 582  PAKLLHFQSPIQALFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHN 641

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPITPP--LAQLPPI---SHLLPATSP 705
            GY+C D    R YISR+VIFHE  FP+ ++ P  P++PP  L    P    S  L A S 
Sbjct: 642  GYLCLDVSTSRIYISRNVIFHESYFPFQSSFP--PLSPPPHLPSSTPALINSPSLSAPSS 699

Query: 706  PPFVGPSIVSD--PP 744
            P    P I SD  PP
Sbjct: 700  PALSSPIITSDFIPP 714


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  225 bits (573), Expect = 1e-56
 Identities = 104/209 (49%), Positives = 138/209 (66%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDDFSKF W++ L  KS V +    F     + F  +I  +QTD G E+  L   F
Sbjct: 536  YVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFF 595

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             ++GI H ++CP++HQQNGS E  HR I++ GL+LL +AS+PL FWD AF  A YLINR+
Sbjct: 596  AKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRV 655

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+  + N +P E LF+  PDY  LRVFGC C+P+LRPY  HKL FRS   +FLG+S +H+
Sbjct: 656  PSKTIQNSTPLEKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHK 715

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPT 627
            G+ C D    R YISRDV+F E  FP+ T
Sbjct: 716  GFKCLDVSSGRVYISRDVVFDENIFPFST 744


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  225 bits (573), Expect = 1e-56
 Identities = 108/227 (47%), Positives = 143/227 (62%), Gaps = 2/227 (0%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDD+SKFVW++ L  KS V +    F     + F  +I  +QTD G E+  L   F
Sbjct: 523  YVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVERQFDRKILSMQTDWGGEYLKLHTFF 582

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             ++GI H ++CP++HQQNG++E  HR IV+ GL+LL HAS+PL FWD AF  A YLINRL
Sbjct: 583  NEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRL 642

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ ++   +P E LF   PDY  LR FGC C+PNLRPY  HKL FRS   +FLG+S  H+
Sbjct: 643  PSKVIKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHK 702

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQ--RPITPPLAQLPP 675
            G+ C D    R Y+SRDV F EQ FP+    P     +   ++ LPP
Sbjct: 703  GFKCLDVSTGRVYVSRDVTFDEQVFPFANLHPNAGARLRAEISLLPP 749


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1145

 Score =  224 bits (572), Expect = 2e-56
 Identities = 105/207 (50%), Positives = 136/207 (65%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDDFSKF W++ L  KS V +    F     + F  +I  +QTD G E+  L   F
Sbjct: 406  YVSFIDDFSKFTWIYLLQHKSQVFEKFQEFQVMIERLFDRKILAMQTDWGGEYRALNSFF 465

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
            +++GI H ++CP++HQQNGS E  HR IV+ GL+LL HA +PL FWD AF+ A YLINR+
Sbjct: 466  SKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATYLINRV 525

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ ++ N +P E  F   PDYS LRVFGC C+PNLRPY  HKL FRS    FLG+S  H+
Sbjct: 526  PSRVIQNTTPLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGFSNMHK 585

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPY 621
            G+ C D    R YISRDV+F E  FP+
Sbjct: 586  GFKCLDISSGRVYISRDVVFDENIFPF 612


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  223 bits (569), Expect = 4e-56
 Identities = 119/234 (50%), Positives = 143/234 (61%), Gaps = 6/234 (2%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTP--LKP 174
            Y+  IDD+S++ WL+PL  KS V      F   A K FST IK IQTD G EFT    K 
Sbjct: 538  YVLFIDDYSRYSWLYPLHRKSDVFATFVKFKTIAEKLFSTSIKQIQTDNGGEFTSNQFKQ 597

Query: 175  IFTQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLIN 354
              T  GI HR+TCP++ QQNG +E  HR I + GLTLL  +SL   +W  AF T+++LIN
Sbjct: 598  FLTAQGIFHRLTCPHTSQQNGIVERKHRHIQEMGLTLLAQSSLSPQYWVDAFLTSVFLIN 657

Query: 355  RLPTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPN 534
            RLPT +L N +PY LL  T P Y  LRVFGC C+P LRPY  HKL+FRS   IFLGYS  
Sbjct: 658  RLPTKVLDNLTPYFLLHKTEPTYMDLRVFGCACYPLLRPYNDHKLTFRSKKCIFLGYSNC 717

Query: 535  HRGYICYDWVERRSYISRDVIFHEQEFPYPT----TSPQRPITPPLAQLPPISH 684
             +GY C D   +R YISR VIF E  FP       T+ +R   P    +PPISH
Sbjct: 718  QKGYRCLDLATKRVYISRHVIFDEHSFPAKELAEYTTSRRTNPPADIVIPPISH 771


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  223 bits (568), Expect = 5e-56
 Identities = 115/248 (46%), Positives = 154/248 (62%), Gaps = 6/248 (2%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++  D +S++ W++ L  KS   +    F   A   F  ++K  QTD G EF  LK  F
Sbjct: 397  YVSFXDAYSRYTWVYXLKTKSQTREAFLMFKAQAELQFGCKLKTFQTDWGGEFRSLKTYF 456

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             Q GI HR++CP++ +QNG IE  HR IV+ GLTLL  ASLPL +W  AF TA++LINRL
Sbjct: 457  EQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRL 516

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            PT +L  K PYE LF++ P+YS L+VFGCLCFP+LRPY  HKL FRS+P  FLGYS  H+
Sbjct: 517  PTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHK 576

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSPQRPI------TPPLAQLPPISHLLPATS 702
            GY C +  + R +ISR V+F E  FP+     Q+P+      T  L  +P + +L P + 
Sbjct: 577  GYKCLN-QQGRMFISRSVVFDETRFPF-ADRLQKPVQIVSHSTVGLPCIPLVKNLEPJSV 634

Query: 703  PPPFVGPS 726
             P    P+
Sbjct: 635  SPSLSLPT 642


>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1177

 Score =  223 bits (568), Expect = 5e-56
 Identities = 105/212 (49%), Positives = 139/212 (65%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDD+SKFVW++ L  KS V +    F +   + F+ +I  +QTD G E+  L   F
Sbjct: 413  YVSFIDDYSKFVWIYFLKFKSEVFEKFKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFF 472

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             Q+GI H+++CP++HQQNG++E  HR IV+ GL+LL HAS+PL FWD AF  A YLINRL
Sbjct: 473  KQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRL 532

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P  ++   +P   LF   PDY  LR FGC C+PNLRPY  HKL FRS   +FLG+S  H+
Sbjct: 533  PRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHK 592

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSP 636
            G+ C +    + YISRDV F EQEFP+    P
Sbjct: 593  GFKCLEVATGQVYISRDVTFDEQEFPFSKLQP 624


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
            gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
            protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  223 bits (568), Expect = 5e-56
 Identities = 105/212 (49%), Positives = 139/212 (65%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDD+SKFVW++ L  KS V +    F +   + F+ +I  +QTD G E+  L   F
Sbjct: 524  YVSFIDDYSKFVWIYFLKFKSEVFEKFKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFF 583

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
             Q+GI H+++CP++HQQNG++E  HR IV+ GL+LL HAS+PL FWD AF  A YLINRL
Sbjct: 584  KQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRL 643

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P  ++   +P   LF   PDY  LR FGC C+PNLRPY  HKL FRS   +FLG+S  H+
Sbjct: 644  PRKVIDFDTPLARLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHK 703

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPYPTTSP 636
            G+ C +    + YISRDV F EQEFP+    P
Sbjct: 704  GFKCLEVATGQVYISRDVTFDEQEFPFSKLQP 735


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  223 bits (567), Expect = 7e-56
 Identities = 106/207 (51%), Positives = 135/207 (65%)
 Frame = +1

Query: 1    YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
            Y++ IDDFSKF W++ L  KS V      F     + F  +I  +QTD G E+  L   F
Sbjct: 527  YVSFIDDFSKFTWIYLLKQKSEVFHKFHEFQQLVERIFYRKIIAMQTDWGGEYEKLHDFF 586

Query: 181  TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
            T++GI H ++CP++HQQNGS E  HR IV+ GL+LL HAS+PL FWD AF  A YLINR 
Sbjct: 587  TKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRT 646

Query: 361  PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
            P+ ++  ++P E LF   P Y+ LRVFGC C+PNLRPY A KL FRS   +FLGYS  H+
Sbjct: 647  PSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLHK 706

Query: 541  GYICYDWVERRSYISRDVIFHEQEFPY 621
            G+ C D    R YISRDV+F E  FP+
Sbjct: 707  GFKCLDVAAGRVYISRDVVFDENVFPF 733


>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1001

 Score =  222 bits (566), Expect = 9e-56
 Identities = 106/212 (50%), Positives = 139/212 (65%)
 Frame = +1

Query: 1   YLAIIDDFSKFVWLFPLSAKSMVSKVVSTFINFATKFFSTQIKYIQTDGGTEFTPLKPIF 180
           Y++ IDDFSKF W++ L  KS V +    F++F  +    +I  +QTD G E+  L   F
Sbjct: 275 YVSFIDDFSKFTWIYFLKYKSEVLQKFQEFLSFVERLLDRKIIAMQTDWGGEYEKLNSFF 334

Query: 181 TQLGIHHRITCPYSHQQNGSIETHHRRIVDTGLTLLKHASLPLTFWDYAFETAIYLINRL 360
           T++GI HR++CP++HQQNG+ E  HR IV+ GL LL HAS+PL FWD AF TA YLINR 
Sbjct: 335 TKIGISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLKFWDEAFCTATYLINRT 394

Query: 361 PTPILHNKSPYELLFSTPPDYSILRVFGCLCFPNLRPYRAHKLSFRSTPTIFLGYSPNHR 540
           P   ++  +P E LF   P+Y+ LR FGC C+PNLRPY + KL FRST  +FLGYS  ++
Sbjct: 395 PAKTINFDTPLERLFHQKPEYASLRTFGCACWPNLRPYNSKKLVFRSTQCVFLGYSRLYK 454

Query: 541 GYICYDWVERRSYISRDVIFHEQEFPYPTTSP 636
           G+ C      R YISRDVIF+E  FP+    P
Sbjct: 455 GFKCLHVSTGRIYISRDVIFYENVFPFAKLHP 486