BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00026263
         (556 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004244115.1| PREDICTED: pentatricopeptide repeat-containi...    90   4e-16
ref|XP_006346263.1| PREDICTED: pentatricopeptide repeat-containi...    84   3e-14
ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi...    81   2e-13
gb|EXB37463.1| hypothetical protein L484_002563 [Morus notabilis]      78   2e-12
ref|XP_006470533.1| PREDICTED: pentatricopeptide repeat-containi...    77   3e-12
gb|EXB80462.1| hypothetical protein L484_004369 [Morus notabilis]      77   4e-12
ref|XP_006446304.1| hypothetical protein CICLE_v100144562mg, par...    76   6e-12
ref|XP_004301454.1| PREDICTED: pentatricopeptide repeat-containi...    62   9e-08
ref|XP_006858935.1| hypothetical protein AMTR_s00068p00078600 [A...    60   3e-07
ref|XP_006285775.1| hypothetical protein CARUB_v10007249mg [Caps...    59   6e-07
ref|XP_004492420.1| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06
gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]              58   1e-06
ref|NP_194530.1| pentatricopeptide repeat-containing protein [Ar...    58   2e-06
ref|XP_006588075.1| PREDICTED: putative pentatricopeptide repeat...    57   2e-06
gb|EXC07317.1| hypothetical protein L484_021225 [Morus notabilis]      57   3e-06
ref|XP_004293229.1| PREDICTED: putative pentatricopeptide repeat...    57   4e-06
gb|EOY14673.1| Pentatricopeptide repeat superfamily protein [The...    55   9e-06

>ref|XP_004244115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Solanum lycopersicum]
          Length = 737

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = +1

Query: 214 TKGIDNEIMRLCGNPSCNFARVVQIFDRNAE-LGAIPSAETCNFLATKLFKSGAHELALQ 390
           T+ +D ++  LC  P+  +   V +F+   + LG  PS  TCNFL   L KS  + LAL+
Sbjct: 43  TQKLDTQLRSLCEKPNPKYNNAVLLFNHVLDDLGQTPSESTCNFLVVTLAKSKEYNLALR 102

Query: 391 VYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           VY +   + V  +FL LA+L+E +V++ +PK A+GV+  +LK+G+ VNV+++N++
Sbjct: 103 VYRKTRQVQVLPRFLSLAALIECFVYVHKPKLAIGVLGLMLKNGFKVNVYVVNVI 157


>ref|XP_006346263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Solanum tuberosum]
          Length = 737

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +1

Query: 214 TKGIDNEIMRLCGNPSCNFARVVQIFDRNAE-LGAIPSAETCNFLATKLFKSGAHELALQ 390
           T+ +D  +  LC  P+  +   V +F+   +     PS  TCNFL   L KS  + LAL+
Sbjct: 43  TQKLDTHLRSLCEKPNPKYNNAVSLFNHVIDDFRQTPSESTCNFLVVTLAKSKEYNLALR 102

Query: 391 VYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           VY ++    V  +FL LA+L+E +V++ +PK A+GV+  +LK+GY  NV+++N++
Sbjct: 103 VYCKMRKAQVLPRFLSLAALIECFVYVHKPKLAIGVLGLMLKNGYKANVYVVNVI 157


>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 38/111 (34%), Positives = 63/111 (56%)
 Frame = +1

Query: 223 IDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYER 402
           ++ ++  LC  P+  F   V +F    +   +PS  TCNFL   L +S  + LA  VY R
Sbjct: 40  LETQLRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRR 99

Query: 403 IINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           + ++ V   F  L++L+E +    +P+   GV+  +LK G++VNVF+MNI+
Sbjct: 100 MTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIV 150


>gb|EXB37463.1| hypothetical protein L484_002563 [Morus notabilis]
          Length = 750

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 37/111 (33%), Positives = 63/111 (56%)
 Frame = +1

Query: 223 IDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYER 402
           ++ ++  LC  P+  F+    +F+R  E     SA TCNFL   L +S  ++L+  VYE+
Sbjct: 29  LEIQLRSLCEKPNSQFSEAFSLFNRAIESERFVSASTCNFLVHALTRSRNYDLSFSVYEK 88

Query: 403 IINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           + +L +   F+ L+ L+  +V   +PK ALGV+  +LK GY  N  + N++
Sbjct: 89  MTHLRIFPNFISLSCLIACFVDARKPKFALGVLGLVLKRGYKANALVRNLV 139


>ref|XP_006470533.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like isoform X1 [Citrus sinensis]
           gi|568832635|ref|XP_006470534.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g28010-like isoform X2 [Citrus sinensis]
          Length = 721

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 38/115 (33%), Positives = 61/115 (53%)
 Frame = +1

Query: 211 PTKGIDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQ 390
           P   ++ ++  L   P+  +A  V +F R      +PS   CN L   L +S  +E A  
Sbjct: 29  PQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMEALVRSKNYEYAFS 88

Query: 391 VYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           VY ++  + +   FL L+ L+E +V   +PK ALGVI  ILK G+ VN++  N++
Sbjct: 89  VYSKMTRVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFVVNIYAFNLI 143


>gb|EXB80462.1| hypothetical protein L484_004369 [Morus notabilis]
          Length = 718

 Score = 76.6 bits (187), Expect = 4e-12
 Identities = 37/111 (33%), Positives = 62/111 (55%)
 Frame = +1

Query: 223 IDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYER 402
           ++ ++  LC  P+  F+    +F+R  E     SA TCNFL   L +S  ++LA  VYE+
Sbjct: 29  LEIQLRSLCEKPNSQFSEAFSLFNRAIESERFVSASTCNFLVHALTRSRNYDLAFSVYEK 88

Query: 403 IINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           + +L +   F+ L+ L+  +V   +PK A GV+  +LK GY  N  + N++
Sbjct: 89  MTHLRIFPNFISLSCLIACFVDARKPKFARGVLGLVLKRGYKANALVRNLV 139


>ref|XP_006446304.1| hypothetical protein CICLE_v100144562mg, partial [Citrus
           clementina] gi|557548915|gb|ESR59544.1| hypothetical
           protein CICLE_v100144562mg, partial [Citrus clementina]
          Length = 503

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 38/115 (33%), Positives = 61/115 (53%)
 Frame = +1

Query: 211 PTKGIDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQ 390
           P   ++ ++  L   P+  +A  V +F R      +PS   CN L   L +S  +E A  
Sbjct: 29  PQSDVETQLRLLFEKPNSQYAEAVSLFQRAICSDRLPSGSVCNSLMQALVRSKNYEYAFS 88

Query: 391 VYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           VY ++  + +   FL L+ L+E +V   +PK ALGVI  ILK G+ VN++  N++
Sbjct: 89  VYSKMTCVHIFPSFLSLSGLIEVFVQTQKPKFALGVIGLILKRGFFVNIYAFNLI 143


>ref|XP_004301454.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Fragaria vesca subsp. vesca]
          Length = 514

 Score = 62.0 bits (149), Expect = 9e-08
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
 Frame = +1

Query: 184 FHDSELKIRPTKGIDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETC--NFLATKL 357
           F  S   I     +++++     +P    +  + IF        +PS      NFL   L
Sbjct: 18  FFSSLPSITSLTNVESQLRAFWKDPDPKISDAISIFHHAIHSNRLPSGSAAAGNFLVDAL 77

Query: 358 FKSGAHELALQVYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNV 537
            +S  +ELA  VY  +  +G+   F+ L+ LV Y+V   +P+ A GV   +LK G+ +N 
Sbjct: 78  SRSKNYELAFSVYTMMTKVGIFTSFVSLSCLVSYFVSTRKPELARGVFGLVLKRGFQLNE 137

Query: 538 FLMNI 552
            +MN+
Sbjct: 138 CVMNL 142


>ref|XP_006858935.1| hypothetical protein AMTR_s00068p00078600 [Amborella trichopoda]
           gi|548863047|gb|ERN20402.1| hypothetical protein
           AMTR_s00068p00078600 [Amborella trichopoda]
          Length = 680

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = +1

Query: 319 PSAETCNFLATKLFKSGAHELALQVYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGV 498
           PS  TCNFL   L ++G  EL L +Y+ +   G+S  F ++  LV  +  + R + ALGV
Sbjct: 88  PSLYTCNFLLESLSRAGQPELTLSLYKTMAEYGISPDFNVMHKLVVCFCQIQRTQFALGV 147

Query: 499 IASILKSGYSVNVFLMNIL 555
           +  I K GY +NV L+ ++
Sbjct: 148 VGLIQKLGYHLNVILLTVV 166


>ref|XP_006285775.1| hypothetical protein CARUB_v10007249mg [Capsella rubella]
           gi|482554480|gb|EOA18673.1| hypothetical protein
           CARUB_v10007249mg [Capsella rubella]
          Length = 699

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 32/111 (28%), Positives = 60/111 (54%)
 Frame = +1

Query: 223 IDNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYER 402
           I++++  LC N +      V +F      G   +    N +AT L +S  +++A  +Y +
Sbjct: 39  IESKLRSLCENSTPQVKNAVSVFQEAVNSGGSLAFAGNNLMAT-LVRSRNYDVAFSIYRK 97

Query: 403 IINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           ++       F+ L+ L+E +V + +   A GV+A++LK G++ NV+ MNIL
Sbjct: 98  MLETDTFINFVSLSGLLECFVQMNKTGFAFGVLAAMLKRGFAFNVYNMNIL 148


>ref|XP_004492420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Cicer arietinum]
          Length = 721

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
 Frame = +1

Query: 184 FHDSELKIRPTKGIDNEIMRLCGNPSCNFARVVQIFDRNAE--LGAIPSAETCNFLATKL 357
           FH S      T  ++++  +L  N   + +  +  F R+ E    ++PS   CN L   L
Sbjct: 19  FHLSSYFSSSTSQVESQPNKL--NSPHSLSESLSHFHRSIEDYPNSLPSYSFCNTLIDNL 76

Query: 358 FKSGAHELALQVYERIINLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNV 537
            K+  ++L + V+ +++++ +   F  L++L+E +V+  +   A GV+  ++K GY VNV
Sbjct: 77  RKAKHYDLVISVHSKMVSVSIFPCFTSLSALIESFVNTQKSSFAFGVLGLMIKRGYDVNV 136

Query: 538 FLMNIL 555
           + MN+L
Sbjct: 137 YNMNLL 142


>gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 33/110 (30%), Positives = 58/110 (52%)
 Frame = +1

Query: 226 DNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERI 405
           + ++  LC + +      V +F +  + G+  +    N +A KL +S  HELA   Y ++
Sbjct: 40  ETKLRSLCEDSNPQLKNAVSVFQQAVDSGSSLAFAGSNLMA-KLVRSRNHELAFSFYRKM 98

Query: 406 INLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           +       F+ L+ L+E YV + +   A GV+A +LK G++ NV+  NIL
Sbjct: 99  LETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148


>ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g28010 gi|4455360|emb|CAB36770.1| putative protein
           [Arabidopsis thaliana] gi|7269655|emb|CAB79603.1|
           putative protein [Arabidopsis thaliana]
           gi|332660020|gb|AEE85420.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/110 (30%), Positives = 57/110 (51%)
 Frame = +1

Query: 226 DNEIMRLCGNPSCNFARVVQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERI 405
           + ++  LC + +      V +F +  + G+   A   N L  KL +S  HELA   Y ++
Sbjct: 40  ETKLRSLCEDSNPQLKNAVSVFQQAVDSGS-SLAFAGNNLMAKLVRSRNHELAFSFYRKM 98

Query: 406 INLGVSRQFLLLASLVEYYVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           +       F+ L+ L+E YV + +   A GV+A +LK G++ NV+  NIL
Sbjct: 99  LETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148


>ref|XP_006588075.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Glycine max]
          Length = 832

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 50/92 (54%)
 Frame = +1

Query: 280 VQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERIINLGVSRQFLLLASLVEY 459
           + +FD  ++L   PS  +CN L  KL +SG  + AL V+E+++ +G+     +++ +V  
Sbjct: 154 LHVFDEMSKLARTPSLRSCNSLLAKLVRSGEGDAALMVFEQVLKMGIVPDVYMISIVVNA 213

Query: 460 YVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           +   G  +CA   +  +   G+ VNV + N L
Sbjct: 214 HCREGSVECAERFVEKMEGMGFEVNVVVYNAL 245


>gb|EXC07317.1| hypothetical protein L484_021225 [Morus notabilis]
          Length = 921

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 29/92 (31%), Positives = 46/92 (50%)
 Frame = +1

Query: 280 VQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERIINLGVSRQFLLLASLVEY 459
           + +FD   + G +PS  +CN L + L K+G H +A+ VY ++I LG+       A +V  
Sbjct: 175 LHVFDNMGKCGRVPSLRSCNSLLSNLVKNGEHHVAVLVYGQVIRLGIDPDAFTCAIMVNA 234

Query: 460 YVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           Y   GR   A+  +  +  SG+  N    N L
Sbjct: 235 YCKQGRVGRAVEFVKEMETSGFETNSVTYNSL 266


>ref|XP_004293229.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Fragaria vesca subsp. vesca]
          Length = 884

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%)
 Frame = +1

Query: 280 VQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERIINLGVSRQFLLLASLVEY 459
           + +FD   + G +PS  +CN L + L ++G  + AL VYE+++ LG+       + +V  
Sbjct: 167 LHVFDNMGKCGRVPSLRSCNSLLSNLVRNGESDTALLVYEQVVRLGIVPDVYTCSIMVRA 226

Query: 460 YVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           Y   GR   A   +  + +SG  VNV   N L
Sbjct: 227 YCKEGRVSRAAEFVKEMERSGVEVNVVSYNSL 258


>gb|EOY14673.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
          Length = 937

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 28/92 (30%), Positives = 48/92 (52%)
 Frame = +1

Query: 280 VQIFDRNAELGAIPSAETCNFLATKLFKSGAHELALQVYERIINLGVSRQFLLLASLVEY 459
           + +FD   + G +PS  +CN L + L K+G    A+ VYE++I +G+       + +V  
Sbjct: 177 LNVFDNMGKYGRVPSLRSCNCLLSNLVKNGEIHTAVLVYEQMIRIGIVPDVFTCSIIVNA 236

Query: 460 YVHLGRPKCALGVIASILKSGYSVNVFLMNIL 555
           Y   GR + A+  +  +  SG+ +NV   N L
Sbjct: 237 YCKEGRAERAVEFVREMENSGFELNVVSYNSL 268