BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00025194
         (645 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   270   3e-70
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   269   6e-70
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   266   4e-69
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   266   4e-69
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   265   6e-69
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         265   6e-69
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   265   6e-69
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   265   8e-69
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     265   8e-69
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   265   8e-69
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   265   8e-69
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              265   1e-68
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  265   1e-68
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  265   1e-68
gb|AAD17351.1| contains similarity to retrovirus-related polypro...   263   2e-68
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   263   3e-68
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       261   2e-67
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   260   3e-67
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   259   6e-67
gb|AAP43914.1| integrase [Gossypium raimondii]                        258   1e-66

>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  270 bits (690), Expect = 3e-70
 Identities = 127/216 (58%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA F  ++  C      + F + +GF+++A +LCIP+S +R LL+QEAH G   GHFG  
Sbjct: 1153 DADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAK 1212

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L  HF+WP+M   V R+     TCQ AKS  HP+GLY PL +P  PWED+SMDF+
Sbjct: 1213 KTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFV 1272

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP ++RG+DSIFVVVDRFSKMAHFI C  T +AS IA LF+  +V+LHG+P ++VSDR
Sbjct: 1273 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDR 1332

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1333 DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1368



 Score =  172 bits (437), Expect = 6e-41
 Identities = 85/195 (43%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
 Frame = +3

Query: 69   QEGFLYKAGRLCIPS-SPIRKLLIQEAHEGRG--HFGVTKTLAALREHFYWPKMTTQVTR 239
            + G L+   R+C+P    +++L++QEAHE     H G TK    L+E ++W  M  ++  
Sbjct: 1995 EHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAE 2054

Query: 240  YCKSRVTCQCAKST-SHPYGLYTPLTIPLAPWEDLSMDFIIGLPLSRRGKDSIFVVVDRF 416
            +      CQ  K+    P GL  PL +P   W+++ MDFI GLP ++ G DSI+VVVDR 
Sbjct: 2055 FVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRL 2114

Query: 417  SKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDRDTKFVSLFWRTLWGKLGTKL 596
            +K+A FI  KTT+  + +A L++  +V LHG+P+ +VSDR+++F S FW+ L  +LGT+L
Sbjct: 2115 TKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRL 2174

Query: 597  LFSTSYHPQTDGQTE 641
             FST+YHPQTDGQTE
Sbjct: 2175 NFSTAYHPQTDGQTE 2189


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  269 bits (687), Expect = 6e-70
 Identities = 125/216 (57%), Positives = 161/216 (74%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  FK ++  C+     + F L  GF+++A +LCIP+S +R LL+QEAH G   GHFGV 
Sbjct: 494  DDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 553

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L +HF+WPKM   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 554  KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 613

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+ +A LF+  +V+LHG+P ++VSDR
Sbjct: 614  LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 673

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 674  DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 709


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  266 bits (680), Expect = 4e-69
 Identities = 123/216 (56%), Positives = 160/216 (74%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA FK +++ C      + F L +GF+++A +LCIP+S +R LL+QEAH G   GHFGV 
Sbjct: 1197 DAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVK 1256

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L  HF+WPKM   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1257 KTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1316

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A ++A LF+  +++LHG+P ++VSDR
Sbjct: 1317 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDR 1376

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWR LW KLG KLLFST+ HPQTDGQTEV
Sbjct: 1377 DTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEV 1412


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  266 bits (680), Expect = 4e-69
 Identities = 125/216 (57%), Positives = 157/216 (72%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA F  ++  C      + F + +GF+++A +LCIP+S +R LL+QEAH G   GHFG  
Sbjct: 1132 DADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAK 1191

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L  HF+WP+M   V R+     TCQ AKS  HP+GLY PL +P  PWED+SMDF+
Sbjct: 1192 KTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFV 1251

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP ++RG+DSIFVVVDRFSKM HFI C  T +AS IA LF+  +V+LHG+P ++VSDR
Sbjct: 1252 LGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDR 1311

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQ EV
Sbjct: 1312 DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEV 1347


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  265 bits (678), Expect = 6e-69
 Identities = 120/193 (62%), Positives = 151/193 (78%), Gaps = 2/193 (1%)
 Frame = +3

Query: 72   EGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVTKTLAALREHFYWPKMTTQVTRYC 245
            +GFL+KA +LC+P   IR+LL+ E+HEG   GHFGV KTL  L+EHF+WP M   V ++C
Sbjct: 773  DGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFFWPHMRRDVHKFC 832

Query: 246  KSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFIIGLPLSRRGKDSIFVVVDRFSKM 425
               + C+ AKS   P+GLYTPL +P  PW D+SMDF++GLP ++ GKDS+FVVVDRFSKM
Sbjct: 833  GHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVFVVVDRFSKM 892

Query: 426  AHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDRDTKFVSLFWRTLWGKLGTKLLFS 605
            AHFI CK   +A  +A LF+  +V+LHG+PRS+VSDRD KF+S FWRTLWGK+GTKLLFS
Sbjct: 893  AHFIPCKKVDDACHVADLFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFS 952

Query: 606  TSYHPQTDGQTEV 644
            T+ HPQTDGQTEV
Sbjct: 953  TTCHPQTDGQTEV 965


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  265 bits (678), Expect = 6e-69
 Identities = 125/216 (57%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA FK ++  C      + + + +GF+++A +LCIP+S +R LL+QEAH G   GHFG  
Sbjct: 1156 DADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAK 1215

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L  HF+WPKM   V R      TCQ AKS  +P+GLY PL +P APWED+SMDF+
Sbjct: 1216 KTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFV 1275

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +R+G+DS+FVVVDRFSKMAHFI C  T +A+ IA LF+  +V+LHG+P ++VSDR
Sbjct: 1276 LGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDR 1335

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            D KF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1336 DAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1371


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  265 bits (678), Expect = 6e-69
 Identities = 124/216 (57%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  FK ++  C      + F L  GF+++A +LCIP+S +R LL+QEAH G   GHFGV 
Sbjct: 1181 DDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L +HF+WPKM   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+ +A LF+  +V+LHG+P ++VSDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTK LFST+ HPQTDGQTEV
Sbjct: 1361 DTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEV 1396


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  265 bits (677), Expect = 8e-69
 Identities = 124/216 (57%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  FK ++  C      + F L  GF+++A +LCIP+S +R LL+QEAH G   GHFGV 
Sbjct: 1181 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L +HF+WPKM   V R+     TCQ AK   +P+GLY PL +P  PWED+SMDF+
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+ +A LF+  +V+LHG+P ++VSDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1361 DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1396


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  265 bits (677), Expect = 8e-69
 Identities = 123/216 (56%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  F     +C      + + + +GFL++A +LC+P   +R LL+QE H G   GHFG  
Sbjct: 1156 DLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWR 1215

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L +HFYWPKM   V R  +  VTC  AKS  +P+GLYTPL +P APWED+SMDF+
Sbjct: 1216 KTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFV 1275

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP ++RG+DSIFVVVDRFSKMAHFI C  + +AS IA+LF+  +V+LHG+P+++VSDR
Sbjct: 1276 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDR 1335

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FW+TLW KLGT+LLFST+ HPQTDGQTEV
Sbjct: 1336 DTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEV 1371


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
           gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
           Japonica Group]
          Length = 681

 Score =  265 bits (677), Expect = 8e-69
 Identities = 123/216 (56%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3   DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
           D  F     +C      + + + +GFL++A +LC+P   +R LL+QE H G   GHFG  
Sbjct: 124 DLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWR 183

Query: 177 KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
           KT   L +HFYWPKM   V R  +  VTC  AKS  +P+GLYTPL +P APWED+SMDF+
Sbjct: 184 KTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFV 243

Query: 357 IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
           +GLP ++RG+DSIFVVVDRFSKMAHFI C  + +AS IA+LF+  +V+LHG+P+++VSDR
Sbjct: 244 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDR 303

Query: 537 DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
           DTKF+S FW+TLW KLGT+LLFST+ HPQTDGQTEV
Sbjct: 304 DTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEV 339


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score =  265 bits (677), Expect = 8e-69
 Identities = 123/216 (56%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3   DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
           D  F     +C      + + + +GFL++A +LC+P   +R LL+QE H G   GHFG  
Sbjct: 124 DLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFGWR 183

Query: 177 KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
           KT   L +HFYWPKM   V R  +  VTC  AKS  +P+GLYTPL +P APWED+SMDF+
Sbjct: 184 KTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFV 243

Query: 357 IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
           +GLP ++RG+DSIFVVVDRFSKMAHFI C  + +AS IA+LF+  +V+LHG+P+++VSDR
Sbjct: 244 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDR 303

Query: 537 DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
           DTKF+S FW+TLW KLGT+LLFST+ HPQTDGQTEV
Sbjct: 304 DTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEV 339


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  265 bits (676), Expect = 1e-68
 Identities = 126/216 (58%), Positives = 161/216 (74%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D+ F+ I   C +      ++  +GFL+   RLCIP+S +R+L I+EAH G   GHFGV+
Sbjct: 1345 DSDFEKIYSSCEKFA-FGKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVS 1403

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT+  +++HF+WP M   V R C+   TC+ AK+ S P+GLYTPL IP  PW D+SMDF+
Sbjct: 1404 KTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFV 1463

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +R GKDSIFVVVDRFSKMAHFI C  T +A  IA LF+  VV+LHG+P+++VSDR
Sbjct: 1464 VGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDR 1523

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FW+TLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1524 DTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEV 1559


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  265 bits (676), Expect = 1e-68
 Identities = 122/216 (56%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA FK ++E C      + F +  GF+++A +LCIP+S IR LL+QEAH G   GHFGV 
Sbjct: 1212 DADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVK 1271

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            K    L  HF+WP+M   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1272 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1331

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+++A LF+  +++LHG+P ++VSDR
Sbjct: 1332 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDR 1391

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            D KF+S FWR LW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1392 DAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEV 1427


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  265 bits (676), Expect = 1e-68
 Identities = 122/216 (56%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            DA FK ++E C      + F +  GF+++A +LCIP+S IR LL+QEAH G   GHFGV 
Sbjct: 1209 DADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVK 1268

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            K    L  HF+WP+M   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1269 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1328

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+++A LF+  +++LHG+P ++VSDR
Sbjct: 1329 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDR 1388

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            D KF+S FWR LW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1389 DAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEV 1424


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
            zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
            E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
            putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score =  263 bits (673), Expect = 2e-68
 Identities = 124/193 (64%), Positives = 152/193 (78%), Gaps = 2/193 (1%)
 Frame = +3

Query: 72   EGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVTKTLAALREHFYWPKMTTQVTRYC 245
            EGFL+   RLCIP+S +R+L I+EAH G   GHFGV+KTL  +++HF+WP M   V R C
Sbjct: 742  EGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERMC 801

Query: 246  KSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFIIGLPLSRRGKDSIFVVVDRFSKM 425
            +   TC+ AK+ S P+GL TPL IPL PW D+SMDF++GLP +R GKDSIFVVVDRFSKM
Sbjct: 802  ERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKM 861

Query: 426  AHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDRDTKFVSLFWRTLWGKLGTKLLFS 605
            AHFI C  T +A  IA LF+  VV+LHG+P+++VSDRDTKF+S FW+TLW KLGTKLLFS
Sbjct: 862  AHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFS 921

Query: 606  TSYHPQTDGQTEV 644
            T+ HPQTDGQTEV
Sbjct: 922  TTCHPQTDGQTEV 934


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  263 bits (672), Expect = 3e-68
 Identities = 123/216 (56%), Positives = 158/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  FK ++  C      + F L  GF+++A +LCIP+S +  LL+QEAH G   GHFGV 
Sbjct: 1077 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVK 1136

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KT   L +H +WPKM   V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1137 KTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1196

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+ +A LF+  +V+LHG+P ++VSDR
Sbjct: 1197 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1256

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1257 DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1292


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  261 bits (666), Expect = 2e-67
 Identities = 122/216 (56%), Positives = 157/216 (72%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D  FK ++  C      + F L  GF+++A +LCIP+S +  LL+QEAH G   GHFGV 
Sbjct: 1181 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVK 1240

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            K    L +HF+WPK    V R+     TCQ AKS  +P+GLY PL +P  PWED+SMDF+
Sbjct: 1241 KMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP +++G+DSIFVVVDRFSKMAHFI C  + +A+ +A LF+  +V+LHG+P ++VSDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            DTKF+S FWRTLW KLGTKLLFST+ HPQTDGQTEV
Sbjct: 1361 DTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1396


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  260 bits (664), Expect = 3e-67
 Identities = 129/216 (59%), Positives = 158/216 (73%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D+ F  I  +C      + F LQ+ FL+K  +LC+P+  +R+L ++EAH G   GHFGV 
Sbjct: 1107 DSDFGEIFAECKLG-PFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGVP 1165

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KTL  L EHFYWP M   V + C   + C+ AKS + P+GLYTPL +  +PW D+SMDFI
Sbjct: 1166 KTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFI 1225

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP ++ GKDSIFVVVDRFSKMA FI CK T++AS +A LF   VVKLHGIPR++VSDR
Sbjct: 1226 LGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDR 1285

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            D KF+S FWR LWGKLGTKLLFSTS HPQTDGQTEV
Sbjct: 1286 DAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEV 1321


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  259 bits (661), Expect = 6e-67
 Identities = 129/216 (59%), Positives = 157/216 (72%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3    DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
            D+ F  I  +C      + F LQ+ FL+K  +LC+P+  +R+L ++EAH G   GHFGV 
Sbjct: 1107 DSDFGEIFAECKLG-PFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGVP 1165

Query: 177  KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
            KTL  L EHFYWP M   V + C   + C+ AKS + P+GLYTPL +   PW D+SMDFI
Sbjct: 1166 KTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFI 1225

Query: 357  IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
            +GLP ++ GKDSIFVVVDRFSKMA FI CK T++AS +A LF   VVKLHGIPR++VSDR
Sbjct: 1226 LGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDR 1285

Query: 537  DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQTEV 644
            D KF+S FWR LWGKLGTKLLFSTS HPQTDGQTEV
Sbjct: 1286 DAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEV 1321


>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score =  258 bits (658), Expect = 1e-66
 Identities = 119/213 (55%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   DAFFKPIVEQCLRDCEVDSFFLQEGFLYKAGRLCIPSSPIRKLLIQEAHEG--RGHFGVT 176
           D+ F  I + C        F+  +G+L++  RLC+P   +R+LL++EAH G   GHFGVT
Sbjct: 124 DSDFASIYDACEHGA-FHKFYKHDGYLFQNNRLCLPKCSMRELLVREAHSGGLMGHFGVT 182

Query: 177 KTLAALREHFYWPKMTTQVTRYCKSRVTCQCAKSTSHPYGLYTPLTIPLAPWEDLSMDFI 356
           KT   L EHFYWP M   V + C + +TC+  KST  P+GLYTPL +P +PW D+S+DF+
Sbjct: 183 KTYDVLHEHFYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYTPLPVPSSPWTDISIDFV 242

Query: 357 IGLPLSRRGKDSIFVVVDRFSKMAHFIACKTTHNASDIAALFYDNVVKLHGIPRSVVSDR 536
           IGLP+++ G+DSIFVVVDRFSKMAHFI C  T +A+ +A LF+  VV+LHGIPR++VSDR
Sbjct: 243 IGLPITKHGRDSIFVVVDRFSKMAHFIPCHKTDDATHVADLFFREVVRLHGIPRTIVSDR 302

Query: 537 DTKFVSLFWRTLWGKLGTKLLFSTSYHPQTDGQ 635
           D KF+S FW+ LWGKLGTKLL+ST+ HPQTDG+
Sbjct: 303 DAKFLSHFWKVLWGKLGTKLLYSTTCHPQTDGR 335