BLASTX nr result
ID: Rheum21_contig00024916
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00024916
(993 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 117 5e-24
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 114 4e-23
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 101 4e-19
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 101 4e-19
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 99 2e-18
gb|ABK28199.1| unknown [Arabidopsis thaliana] 99 3e-18
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 99 3e-18
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 99 3e-18
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 96 2e-17
ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-lik... 96 2e-17
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 96 2e-17
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 96 2e-17
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob... 96 3e-17
gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [... 93 1e-16
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 93 1e-16
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 93 2e-16
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 92 2e-16
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 92 2e-16
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 92 4e-16
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 92 4e-16
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 117 bits (294), Expect = 5e-24
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 6/247 (2%)
Frame = -3
Query: 784 IVLSNENRLYKHLASSIACPR-SNETESILH-LRDCVSIRNVWLSLADTLHPR----FGM 623
+VL+N R+ +H+A S CP +ES++H LRDC ++ +W+ + + R +
Sbjct: 367 VVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSL 426
Query: 622 VHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVN 443
+ M R + S SW ++F VW WK R VF F+ S V
Sbjct: 427 LEWMYGNLKERSD---SERRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVKFLKSAVA 483
Query: 442 AFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDS 263
+AA G +V + +W P+ GWV++ +DGAS GNPG A +GGV+RD
Sbjct: 484 EVEAAHLAANGDAREDVLVER---MIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDE 540
Query: 262 NGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMSTPPKT 83
+G++L +A + G C+ AELW +Y+ L +A G +V L+ DS L S +
Sbjct: 541 HGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDS 600
Query: 82 APNFFRV 62
P F V
Sbjct: 601 HPLAFLV 607
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 114 bits (286), Expect = 4e-23
Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 2/225 (0%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPR-SNETESILH-LRDCVSIRNVWLSLADTLHPRFGMV 620
V ++++N R +HL+ + C E+ILH LRDC ++ +W L +
Sbjct: 14 VQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVP--RDQIRQF 71
Query: 619 HGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVNA 440
S + +N L SW ++F VW WK R +F G F+ +
Sbjct: 72 FTASLLEWIYKN--LRERGSWPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKFIKDLAEE 129
Query: 439 FQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDSN 260
A V+G VS L SW P GWV L +DGASRGNPG A +GGVLRD N
Sbjct: 130 VAIANAFVKGNEVR---VSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHN 186
Query: 259 GAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
GA++ +A + G C+ AELW +Y+ L +A G +V L+ DS
Sbjct: 187 GAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDS 231
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 101 bits (252), Expect = 4e-19
Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 17/236 (7%)
Frame = -3
Query: 781 VLSNENRLYKHLASSIACPR-SNETESILH-LRDCVSIRNVWL--------------SLA 650
V++ E R +HL++S C ES+LH LRDC + +W+ SL
Sbjct: 421 VMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 480
Query: 649 DTLHPRFGMVHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFN-GVDASPR 473
+ L+ G G I WS+IF ++W WK R +F R
Sbjct: 481 EWLYDNLGDRSGCEDIP-------------WSTIFAVIIWWGWKWRCGNIFGENTKCRDR 527
Query: 472 LSCFVCSVVNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGP 293
+ V ++A + V + P V + W P GWV + +DGASRGNPG
Sbjct: 528 VKFVKEWAVEVYRAHSGNVLVGITQPRV----ERMIGWVSPCVGWVKVNTDGASRGNPGL 583
Query: 292 ADSGGVLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
A +GGVLRD GA+ ++ + G C+ AELW +Y+ L A +V L+ DS
Sbjct: 584 ASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDS 639
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 101 bits (252), Expect = 4e-19
Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 17/236 (7%)
Frame = -3
Query: 781 VLSNENRLYKHLASSIACPR-SNETESILH-LRDCVSIRNVWL--------------SLA 650
V++ E R +HL++S C ES+LH LRDC + +W+ SL
Sbjct: 312 VMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 371
Query: 649 DTLHPRFGMVHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFN-GVDASPR 473
+ L+ G G I WS+IF ++W WK R +F R
Sbjct: 372 EWLYDNLGDRSGCEDIP-------------WSTIFAVIIWWGWKWRCGNIFGENTKCRDR 418
Query: 472 LSCFVCSVVNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGP 293
+ V ++A + V + P V + W P GWV + +DGASRGNPG
Sbjct: 419 VKFVKEWAVEVYRAHSGNVLVGITQPRV----ERMIGWVSPCVGWVKVNTDGASRGNPGL 474
Query: 292 ADSGGVLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
A +GGVLRD GA+ ++ + G C+ AELW +Y+ L A +V L+ DS
Sbjct: 475 ASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDS 530
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 99.4 bits (246), Expect = 2e-18
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 11/234 (4%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPRS-NETESILH-LRDCVSIRNVWLS-LADTLHPRFGM 623
+H +L+N R+ + ++S +CP E+ LH LRDC ++ +W L + +F
Sbjct: 733 LHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGINQFFQ 792
Query: 622 VHGMSSIACPRRNVWLSLLD-SWSSIFTTMVWHTWKARNELVFNGVDASP--RLSCFVCS 452
+ + ++ L + D W+ + W+TWK RN +F G + S RLS
Sbjct: 793 IPLIDWLSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEGRLSIIRSV 852
Query: 451 VVNAFQAAATRVQGLVCVPHVVSS-----TSTLASWCPPSPGWVSLCSDGASRGNPGPAD 287
V++ +T P ++S L W PP W+++ SDGA + G A
Sbjct: 853 AVDSHNTWST--------PRIISGGMRHQEEILVGWSPPPEDWIAVNSDGAFKSAVGIAA 904
Query: 286 SGGVLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
+GGVLRDS+G ++ YA + AELW +Y L++A G +V LQSD+
Sbjct: 905 AGGVLRDSHGTWIVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSDN 958
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 99.0 bits (245), Expect = 3e-18
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Frame = -3
Query: 784 IVLSNENRLYKHLASSIACPRSNETE-SILH-LRDCVSIRNVWLSLADTLHPRF----GM 623
++++N R +HL+ S C E +I+H LRDC ++ +W+ L R +
Sbjct: 4 VLMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCXAMEGIWIRLVPAGKRREFFTQSL 63
Query: 622 VHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVN 443
+ + + RR S +WS++F +W WK R +F D F+ +
Sbjct: 64 LEWLFANLGDRRKTCES---TWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLAR 120
Query: 442 AFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDS 263
A V+ L L +W P GW L +DGASRGNPG A +GGVLRD
Sbjct: 121 ETSMAHVIVRTLSGGHG--ERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDE 178
Query: 262 NGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
GA+ +A + G C+ AELW +Y+ L +A +++ ++ DS
Sbjct: 179 EGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDS 224
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 98.6 bits (244), Expect = 3e-18
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Frame = -3
Query: 784 IVLSNENRLYKHLASSIACPRSNETE-SILH-LRDCVSIRNVWLSLADTLHPRF----GM 623
++++N R +HL+ S C E +I+H LRDC ++ +W+ L R +
Sbjct: 4 VLMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSL 63
Query: 622 VHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVN 443
+ + + RR S +WS++F +W WK R +F D F+ +
Sbjct: 64 LEWLFANLGDRRKTCES---TWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLAR 120
Query: 442 AFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDS 263
A V+ L L +W P GW L +DGASRGNPG A +GGVLRD
Sbjct: 121 ETSMAHVIVRTLSGGHG--ERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDE 178
Query: 262 NGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
GA+ +A + G C+ AELW +Y+ L +A +++ ++ DS
Sbjct: 179 EGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDS 224
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 98.6 bits (244), Expect = 3e-18
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Frame = -3
Query: 784 IVLSNENRLYKHLASSIACPRSNETE-SILH-LRDCVSIRNVWLSLADTLHPRF----GM 623
++++N R +HL+ S C E +I+H LRDC ++ +W+ L R +
Sbjct: 4 VLMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSL 63
Query: 622 VHGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVN 443
+ + + RR S +WS++F +W WK R +F D F+ +
Sbjct: 64 LEWLFANLGDRRKTCES---TWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLAR 120
Query: 442 AFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDS 263
A V+ L L +W P GW L +DGASRGNPG A +GGVLRD
Sbjct: 121 ETSMAHVIVRTLSGGHG--ERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDE 178
Query: 262 NGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
GA+ +A + G C+ AELW +Y+ L +A +++ ++ DS
Sbjct: 179 EGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDS 224
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase), Polynucleotidyl
transferase, Ribonuclease H fold-like protein [Theobroma
cacao]
Length = 616
Score = 96.3 bits (238), Expect = 2e-17
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 8/241 (3%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPR-SNETESILHL-RDCVSIRNVWLSLADTLHPRFGMV 620
+HG +L+N ++++SS C S ES+LHL RDC + VWL L +
Sbjct: 360 LHGKLLTNLECRRRNMSSSATCALCSVSDESVLHLLRDCPHSKEVWLKLGSRMGYGNFFD 419
Query: 619 HGMSSIACPRRNVWLSLLDS--WSSIFTTMVWHTWKARNELVFNG--VDASPRLSCFVCS 452
+S + +D W +F W+ WK RN VF G + +LS
Sbjct: 420 LLLSDWLLTNLKNYNVCVDGIPWVILFGFTCWYIWKWRNVKVFEGKLIPMDRKLS----- 474
Query: 451 VVNAFQAAATRVQGLVCVPHVVSS--TSTLASWCPPSPGWVSLCSDGASRGNPGPADSGG 278
++ AA+ + C ++ L W P GWV++ +DGA R N A +GG
Sbjct: 475 MIKGLVAASYHAVQIPCTHSRLNGYKREMLVGWQNPPQGWVAVNTDGALRRNTNMAAAGG 534
Query: 277 VLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMS 98
V RD N +L +A G C AELW + H L++ G S++ LQ D+ ++S
Sbjct: 535 VFRDCNEYWLGGFAAKLGKCYSYRAELWGVLHSLRIVKEKGFSKIWLQVDNKIVVKAIIS 594
Query: 97 T 95
+
Sbjct: 595 S 595
>ref|NP_680382.1| polynucleotidyl transferase, ribonuclease H-like superfamily
protein [Arabidopsis thaliana]
gi|332007502|gb|AED94885.1| polynucleotidyl transferase,
ribonuclease H-like superfamily protein [Arabidopsis
thaliana]
Length = 258
Score = 96.3 bits (238), Expect = 2e-17
Identities = 76/251 (30%), Positives = 110/251 (43%), Gaps = 12/251 (4%)
Frame = -3
Query: 778 LSNENRLYKHL-ASSIACPRSNETESILHL-RDCVSIRNVWLSLADTLHPRFGMVHGMSS 605
+++E R +HL AS+++ ES+LH+ RDC + +W+ RF
Sbjct: 1 MTDEERHRRHLSASNVSQVYIGGVESVLHVFRDCPAQLGIWV--------RFVPRRRQQG 52
Query: 604 IACPRRNVWL--SLLDS-------WSSIFTTMVWHTWKARNELVFN-GVDASPRLSCFVC 455
WL +L D WS+IF ++W WK R +F R+
Sbjct: 53 FFSKSLFEWLYDNLCDRSSCEDIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVKFVKE 112
Query: 454 SVVNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGV 275
VV ++A G V L W P GWV + +DGASRGNPG A +GGV
Sbjct: 113 WVVEVYRAHL----GNALVGSTQPRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGV 168
Query: 274 LRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMST 95
LRD GA+ ++ + G C+ AELW +Y+ L A +V L+ DS L +
Sbjct: 169 LRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTG 228
Query: 94 PPKTAPNFFRV 62
+ P F V
Sbjct: 229 ISDSHPLSFLV 239
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 96.3 bits (238), Expect = 2e-17
Identities = 76/251 (30%), Positives = 110/251 (43%), Gaps = 12/251 (4%)
Frame = -3
Query: 778 LSNENRLYKHL-ASSIACPRSNETESILHL-RDCVSIRNVWLSLADTLHPRFGMVHGMSS 605
+++E R +HL AS+++ ES+LH+ RDC + +W+ RF
Sbjct: 1 MTDEERHRRHLSASNVSQVYIGGVESVLHVFRDCPAQLGIWV--------RFVPRRRQQG 52
Query: 604 IACPRRNVWL--SLLDS-------WSSIFTTMVWHTWKARNELVFN-GVDASPRLSCFVC 455
WL +L D WS+IF ++W WK R +F R+
Sbjct: 53 FFSKSLFEWLYDNLCDRSSCEDIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVKFVKE 112
Query: 454 SVVNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGV 275
VV ++A G V L W P GWV + +DGASRGNPG A +GGV
Sbjct: 113 WVVEVYRAHL----GNALVGSTQPRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGV 168
Query: 274 LRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMST 95
LRD GA+ ++ + G C+ AELW +Y+ L A +V L+ DS L +
Sbjct: 169 LRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTG 228
Query: 94 PPKTAPNFFRV 62
+ P F V
Sbjct: 229 ISDSHPLSFLV 239
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 95.9 bits (237), Expect = 2e-17
Identities = 69/239 (28%), Positives = 102/239 (42%), Gaps = 4/239 (1%)
Frame = -3
Query: 781 VLSNENRLYKHLASSIACPRSNETESILH--LRDCVSIRNVWLSLADTLHPRFGMVHGMS 608
+++N NR + L C E E LR C R +W L L +
Sbjct: 1068 LMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRKLG-MLGEHNREEINLG 1126
Query: 607 SIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASP--RLSCFVCSVVNAFQ 434
S + + W +F W W+ RN+ FN + P ++S F+ + V +
Sbjct: 1127 SWITKNLSADTMMGSEWLRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVS-FIFARVKEIK 1185
Query: 433 AAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDSNGA 254
A R H L W P GWV L +DGAS+GNPGPA GG++R G
Sbjct: 1186 EAMDR-NDTNKSQHSGRRKEILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGE 1244
Query: 253 FLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMSTPPKTAP 77
+ +A +CG+C AEL A+ L +A QV++ DS +L+S P ++P
Sbjct: 1245 IHEVFAINCGSCTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVAKLLISNAPPSSP 1303
>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 391
Score = 95.5 bits (236), Expect = 3e-17
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 15/238 (6%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPRS-NETESILH-LRDCVSIRNVWLSLADTLHPRFGMV 620
+H +L+N + ++S +CP E+ LH LRDC + + +W ++ P+ G+
Sbjct: 107 LHKRILTNAEGVRHKMSSDASCPHYYGAKETCLHVLRDCPASKTLWRNIL----PQSGIN 162
Query: 619 HGMSSIACPRRNVWLSLLD------SWSSIFTTMVWHTWKARNELVFNGVDASP--RLSC 464
+ + L+L + W+ +F W+TWK RN +F G + S RLS
Sbjct: 163 QFFQTPLIDWLSSNLNLKNLYVFDVPWNIVFGIACWYTWKWRNLFIFEGRELSVEGRLSI 222
Query: 463 FVCSVVNAFQAAATRVQGLVCVPHVVSS-----TSTLASWCPPSPGWVSLCSDGASRGNP 299
VN+ +T P ++S L W PP W+++ SDG +
Sbjct: 223 IKSMAVNSHNTWST--------PSIISGGMRHQEEILVGWSPPPKDWIAVNSDGVFKSAA 274
Query: 298 GPADSGGVLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
A +GGVLRD++G ++ YA + L ELW Y L++A G +V LQSD+
Sbjct: 275 RTAAAGGVLRDAHGTWIVGYACKLETSSGLRVELWGFYKGLQLAWERGFRKVKLQSDN 332
>gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [Prunus persica]
Length = 343
Score = 93.2 bits (230), Expect = 1e-16
Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 4/222 (1%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACP-RSNETESILH-LRDCVSIRNVWLSLADTLHPRFGMV 620
V G +LSNE+R + L +C +E+ILH LR+ + VW ++ L
Sbjct: 120 VIGKILSNEHRYKRQLTLDPSCSIYGGSSETILHILREGPQAKEVWRAILLLLQVPHFFQ 179
Query: 619 HGMSS-IACPRRNVWLSLLD-SWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVV 446
H + ++C N + W++IF W+ WK RN VFN +A P C +++
Sbjct: 180 HDLQPWLSCNILNKNKGCVGLPWNTIFGFTYWYIWKWRNHCVFNNEEALPY--CPQNTIL 237
Query: 445 NAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRD 266
A A + V P + +LA W PP GW L DG R + G +GGVLR+
Sbjct: 238 KA--AKEWLLHAYVSQPKKLKVLVSLA-WVPPDVGWFKLNVDGYRRFSSGNIGTGGVLRN 294
Query: 265 SNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVL 140
NG +++ + S G L AE+W ++ LK+A+A S ++
Sbjct: 295 CNGDWVEGFTTSLGQGQVLDAEIWGLFFGLKLAVACNISHLM 336
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 93.2 bits (230), Expect = 1e-16
Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 5/200 (2%)
Frame = -3
Query: 709 ESILH-LRDCVSIRNVWLSLADTLHPRF---GMVHGMSSIACPRRNVWLSLLDSWSSIFT 542
E+ILH L+DC SI +W L G + G + +N +W+++F
Sbjct: 726 ETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKNAETGY--AWATLFA 783
Query: 541 TMVWHTWKARNELVFNGVD-ASPRLSCFVCSVVNAFQAAATRVQGLVCVPHVVSSTSTLA 365
+VW +WK R VF V R+ F A A Q + + L
Sbjct: 784 IVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHSQN----GGLRTRVERLV 839
Query: 364 SWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDSNGAFLKAYAFSCGNCNDLTAELWAIY 185
+W PP WV L +DGASRGN G A +GGVLRD G + +A G C+ AELW +Y
Sbjct: 840 AWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVY 899
Query: 184 HDLKMALAMGPSQVLLQSDS 125
+ L MA ++V L+ DS
Sbjct: 900 YGLYMAWERRFTRVELEVDS 919
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 92.8 bits (229), Expect = 2e-16
Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 9/232 (3%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPRS-NETESILH-LRDCVSIRNVWLS-LADTLHPRFGM 623
+H +L+N R+ + ++S +CP E+ LH LRDC++ +W L ++ +F
Sbjct: 605 LHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWRRILPESGINQFFQ 664
Query: 622 VHGMSSIACPRRNVWLSLLD-SWSSIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVV 446
+ + ++ L + D W+ +F T W+TWK N +F G + S V +
Sbjct: 665 IPLIDWLSSNLNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFEGRELS------VEGRL 718
Query: 445 NAFQAAATRVQGLVCVPHVVSS-----TSTLASWCPPSPGWVSLCSDGASRGNPGPADSG 281
N ++ A ++S L W PP W+++ DGA + +G
Sbjct: 719 NIIRSMAVDSHNTWSTYRIISGGMRHQEKILVGWSPPPEDWITVNLDGAFKSAARTTAAG 778
Query: 280 GVLRDSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
GVLRD++G ++ YA + AELW +Y L++A G +V LQSD+
Sbjct: 779 GVLRDAHGTWIVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSDN 830
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 92.4 bits (228), Expect = 2e-16
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 3/226 (1%)
Frame = -3
Query: 793 VHGIVLSNENRLYKHLASSIACPRSN-ETESILH-LRDCVSIRNVWLSLADTLHPRFGMV 620
+HG +L+N RL++ L + CP+ E E++ H LRDC+ ++W
Sbjct: 129 LHGRLLTNRKRLHRQLTADSLCPQCRMEDETVTHVLRDCMVATSLW-------------- 174
Query: 619 HGMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFN-GVDASPRLSCFVCSVVN 443
L L + WS +F W+ WK RN +VF+ + + + + S+
Sbjct: 175 -----------KQQLILGNPWSIVFRLACWYLWKWRNGVVFDVAFNPTRKRISMIKSMAT 223
Query: 442 AFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDS 263
A A + G+ L W P GWV L +DGA + + A +GGV R++
Sbjct: 224 ATIAPSADFDGVQVERR--KKEEVLIEWRAPQVGWVCLNTDGAYKRSIEEASAGGVKRNA 281
Query: 262 NGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDS 125
G + + G C+ AELW I H L++A G +V +Q D+
Sbjct: 282 EGDWQAGFVAKLGKCSAYRAELWGILHGLRLAWDSGFKKVQVQVDN 327
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 92.4 bits (228), Expect = 2e-16
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 9/242 (3%)
Frame = -3
Query: 781 VLSNENRLYKHLASSIACPRSNETESIL-HL-RDCVSIRNVWLSLADTLHPRFGM---VH 617
++ N R + LA + +CP E + L HL R C+ W S L + +H
Sbjct: 1061 LMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMH 1120
Query: 616 GMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASP----RLSCFVCSV 449
AC + +WS IF ++W+ WKARN LVF+ +P S S
Sbjct: 1121 SWMKAACSSQQKD-GYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSE 1179
Query: 448 VNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLR 269
A T +Q ++ T W PP+ G+ L SDGA + + A +GG+LR
Sbjct: 1180 ARCLLAKRTGLQ---------TAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLR 1230
Query: 268 DSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMSTPP 89
+ NG ++ Y + G N AELW + L +A G ++++ ++DS +L P
Sbjct: 1231 NENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGP 1290
Query: 88 KT 83
T
Sbjct: 1291 VT 1292
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 91.7 bits (226), Expect = 4e-16
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 9/242 (3%)
Frame = -3
Query: 781 VLSNENRLYKHLASSIACPRSNETESIL-HL-RDCVSIRNVWLSLADTLHPRFGM---VH 617
++ N R + LA + +CP E + L HL R C+ W S L + +H
Sbjct: 1593 LMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMH 1652
Query: 616 GMSSIACPRRNVWLSLLDSWSSIFTTMVWHTWKARNELVFNGVDASP----RLSCFVCSV 449
AC + +WS IF ++W+ WKARN LVF+ +P S S
Sbjct: 1653 SWMKAACSSQQKD-GYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNRSFMESSE 1711
Query: 448 VNAFQAAATRVQGLVCVPHVVSSTSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLR 269
A T +Q ++ T W PP+ G+ L SDGA + + A +GG+LR
Sbjct: 1712 ARCLLAKRTGLQ---------TAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLR 1762
Query: 268 DSNGAFLKAYAFSCGNCNDLTAELWAIYHDLKMALAMGPSQVLLQSDSTHACNMLMSTPP 89
+ NG ++ Y + G N AELW + L +A G ++++ ++DS +L P
Sbjct: 1763 NENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGP 1822
Query: 88 KT 83
T
Sbjct: 1823 VT 1824
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
transferase, Ribonuclease H fold [Medicago truncatula]
Length = 729
Score = 91.7 bits (226), Expect = 4e-16
Identities = 76/265 (28%), Positives = 113/265 (42%), Gaps = 21/265 (7%)
Frame = -3
Query: 856 RRKPPSVGQPWSA-----GLHHRDSSV----HGIVLSNENRLYKHLASSIACPR-SNETE 707
+ P +VG W G H + + HG +L+N R + S CP + E E
Sbjct: 454 QENPFAVGGDWKTLWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDE 513
Query: 706 SILH-LRDCVSIRNVWLSLADTLHPRFGMVHGMSSIACPRRNVWLSLLD--------SWS 554
+++H LRDCV VWL L + S C R V+ +L +W
Sbjct: 514 TVIHVLRDCVHSTQVWLRLIP-----HNYITNFFSFDC-REWVFNNLNKKGIGDNPATWQ 567
Query: 553 SIFTTMVWHTWKARNELVFNGVDASPRLSCFVCSVVNAFQAAATRVQGLVCVPHVVS--S 380
+ F T W+ W RN+ +F P V Q ++ + H S
Sbjct: 568 TTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLV------IQKFTREIEDNTKLVHKSSHQK 621
Query: 379 TSTLASWCPPSPGWVSLCSDGASRGNPGPADSGGVLRDSNGAFLKAYAFSCGNCNDLTAE 200
+ W P GWV L DGA +G+ A GG+LRDS+G ++K Y G C+ AE
Sbjct: 622 ETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAE 681
Query: 199 LWAIYHDLKMALAMGPSQVLLQSDS 125
+W +Y L MA + ++++SDS
Sbjct: 682 MWGMYLGLDMAWRENTTHLIVESDS 706