BLASTX nr result
ID: Rheum21_contig00023821
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00023821
(281 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 82 6e-14
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ... 82 7e-14
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi... 82 1e-13
ref|XP_004240202.1| PREDICTED: uncharacterized protein LOC101267... 81 1e-13
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 81 1e-13
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera] 81 2e-13
ref|XP_004239452.1| PREDICTED: uncharacterized protein LOC101259... 80 2e-13
emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera] 80 2e-13
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 80 3e-13
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 80 4e-13
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera] 79 5e-13
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 79 6e-13
emb|CAN65308.1| hypothetical protein VITISV_002323 [Vitis vinifera] 79 6e-13
emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera] 78 1e-12
ref|XP_004246827.1| PREDICTED: uncharacterized protein LOC101260... 77 2e-12
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 77 2e-12
gb|AEJ72555.1| putative retroelement polyprotein [Malus domestica] 77 2e-12
gb|EXC35359.1| Retrovirus-related Pol polyprotein from transposo... 77 3e-12
emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera] 77 3e-12
ref|XP_004231415.1| PREDICTED: uncharacterized protein LOC101266... 76 4e-12
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/79 (50%), Positives = 48/79 (60%)
Frame = +2
Query: 41 KPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDD 220
K S +C C LAK +L S FEL+HID+WGP+ V + G KYFLT+VDD
Sbjct: 594 KNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDD 653
Query: 221 HSRCTWTYLLISKDQVKSV 277
HSR TW YLL SK V +V
Sbjct: 654 HSRATWIYLLKSKSDVLTV 672
>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
Length = 1131
Score = 82.0 bits (201), Expect = 7e-14
Identities = 38/78 (48%), Positives = 46/78 (58%)
Frame = +2
Query: 35 KGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLV 214
K K HC C LAK +L + F+L+H+D+WGP+ V L G KYFLT+V
Sbjct: 541 KHKNKGDAHCHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYFLTIV 600
Query: 215 DDHSRCTWTYLLISKDQV 268
DDHSR TW YLL SK V
Sbjct: 601 DDHSRATWIYLLQSKSDV 618
>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1264
Score = 81.6 bits (200), Expect = 1e-13
Identities = 36/81 (44%), Positives = 51/81 (62%)
Frame = +2
Query: 35 KGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLV 214
K K S +C C LAK +L +FE++HID+WGP+ V ++G +YFLT+V
Sbjct: 440 KHKNKGSDYCHVCHLAKHRKLSFPSQNNVCNEIFEMLHIDIWGPFSVETVDGYQYFLTIV 499
Query: 215 DDHSRCTWTYLLISKDQVKSV 277
DDHSR TW YLL +K +V ++
Sbjct: 500 DDHSRATWIYLLKTKSEVLTI 520
>ref|XP_004240202.1| PREDICTED: uncharacterized protein LOC101267997 [Solanum
lycopersicum]
Length = 811
Score = 81.3 bits (199), Expect = 1e-13
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +2
Query: 56 FHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCT 235
F C C +A+ RL H+ S+F+L+H+DLWGPY V + +YF+TLVDD+SR T
Sbjct: 619 FTCTICPMARQTRLPFTHSTTHSKSIFDLLHVDLWGPYHVTTYDNCRYFITLVDDYSRAT 678
Query: 236 WTYLLISKDQVKSV 277
WTYLL +K V
Sbjct: 679 WTYLLSTKSNAIQV 692
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = +2
Query: 5 VSKMVHMPGCKGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVAL 184
V++++H + + C +C LAK HRL HA+ ELV+ D+WGP V +
Sbjct: 498 VTRIMHNCNVSCGKYKATVCSSCQLAKSHRLPTHLSSFHASKPLELVYTDIWGPASVTST 557
Query: 185 NGSKYFLTLVDDHSRCTWTYLLISKDQ 265
+G+KYF+ VDD+SR TW YLL SKDQ
Sbjct: 558 SGAKYFILFVDDYSRYTWLYLLQSKDQ 584
>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
Length = 1131
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/76 (50%), Positives = 46/76 (60%)
Frame = +2
Query: 47 HDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHS 226
H + CE C +AK HRL A+ F LVH DLWGP VV NG++YF+ VDDH+
Sbjct: 462 HPARVCEPCQMAKSHRLPFTLSESRASQPFALVHSDLWGPAPVVGTNGARYFVLFVDDHT 521
Query: 227 RCTWTYLLISKDQVKS 274
R +W YLL KDQ S
Sbjct: 522 RFSWLYLLAFKDQAIS 537
>ref|XP_004239452.1| PREDICTED: uncharacterized protein LOC101259633 [Solanum
lycopersicum]
Length = 1105
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = +2
Query: 56 FHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCT 235
F C C +A+ RL H+ S+F+L+H++LWGPY V N +YF+TLVDD+SR T
Sbjct: 625 FTCTICPMARQTRLPFTHSTTHSKSIFDLLHVNLWGPYHVPTYNNCRYFITLVDDYSRAT 684
Query: 236 WTYLLISKDQVKSV 277
WTYLL +K V
Sbjct: 685 WTYLLSTKSNAIQV 698
>emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
Length = 1505
Score = 80.5 bits (197), Expect = 2e-13
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = +2
Query: 35 KGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLV 214
+ K SF CE C LAK HR + F L+H D+WGP ++ L+G K+F+T +
Sbjct: 518 RNKNPSSFQCEFCELAKHHRTSFPLQPYRISKPFSLIHSDVWGPSRISTLSGKKWFVTFI 577
Query: 215 DDHSRCTWTYLLISKDQVKSV 277
DDH+R +W YLL K +V+ V
Sbjct: 578 DDHTRVSWVYLLREKSEVEEV 598
>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/87 (42%), Positives = 52/87 (59%)
Frame = +2
Query: 17 VHMPGCKGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSK 196
V P + K D C C LAK R + S F+L+H+D+WG Y V +L+G++
Sbjct: 546 VLFPFLQNKTLDVSTCSICPLAKHTRTPFPLSVSSSDSCFDLIHVDIWGGYHVPSLSGAQ 605
Query: 197 YFLTLVDDHSRCTWTYLLISKDQVKSV 277
YFLT+VDDHSR TW YL+ K + +S+
Sbjct: 606 YFLTIVDDHSRSTWVYLMHHKSEARSL 632
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/79 (46%), Positives = 48/79 (60%)
Frame = +2
Query: 41 KPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDD 220
K S C C LAK +L +F+L+HID+WGP+ V + G KYFLT+VDD
Sbjct: 583 KNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDD 642
Query: 221 HSRCTWTYLLISKDQVKSV 277
HSR TW YLL +K +V +V
Sbjct: 643 HSRATWMYLLKTKSEVLTV 661
>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
Length = 1432
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/87 (42%), Positives = 52/87 (59%)
Frame = +2
Query: 5 VSKMVHMPGCKGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVAL 184
VSK+++ + SF C C LAK HRL HA+ ELV+ D+WGP + +
Sbjct: 503 VSKVMNTCNVASGKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLELVYTDIWGPASIKST 562
Query: 185 NGSKYFLTLVDDHSRCTWTYLLISKDQ 265
+G++YF+ VDD+SR TW Y L +KDQ
Sbjct: 563 SGARYFILFVDDYSRYTWFYSLQTKDQ 589
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 79.0 bits (193), Expect = 6e-13
Identities = 37/91 (40%), Positives = 54/91 (59%)
Frame = +2
Query: 5 VSKMVHMPGCKGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVAL 184
+S ++ P K K + FHC C ++K L ++ F+L+HID WGP+ V
Sbjct: 422 MSSLLSFP--KQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTH 479
Query: 185 NGSKYFLTLVDDHSRCTWTYLLISKDQVKSV 277
+G +YFLT+VDD+SR TW YLL +K V +V
Sbjct: 480 DGYRYFLTIVDDYSRATWVYLLRNKSDVLTV 510
>emb|CAN65308.1| hypothetical protein VITISV_002323 [Vitis vinifera]
Length = 1114
Score = 79.0 bits (193), Expect = 6e-13
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +2
Query: 62 CETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCTWT 241
C+ C+LAK RL + FEL+H D+WGPYK+ +L+G+KYFLT+VDD+SR TW
Sbjct: 426 CDVCALAKQRRLPISVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTWV 485
Query: 242 YLLISKDQVK 271
+ + K + +
Sbjct: 486 FFMHHKSETQ 495
>emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
Length = 2077
Score = 77.8 bits (190), Expect = 1e-12
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +2
Query: 53 SFHCETCSLAKF-HRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSR 229
S CE+C L K+ H L A SLFELVH D+WGP ++ + G +YF+TL+DD+SR
Sbjct: 666 SLACESCQLGKYTHVLFPKCLNNRAKSLFELVHTDVWGPCRIASTLGFQYFVTLIDDYSR 725
Query: 230 CTWTYLLISKDQVKSV 277
CTW +L+ +++++ S+
Sbjct: 726 CTWLFLMKNQNELFSI 741
>ref|XP_004246827.1| PREDICTED: uncharacterized protein LOC101260567 [Solanum
lycopersicum]
Length = 923
Score = 77.4 bits (189), Expect = 2e-12
Identities = 34/68 (50%), Positives = 45/68 (66%)
Frame = +2
Query: 56 FHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCT 235
F C C +A+ RL H+ S+F+L+HIDLWGPY V + +Y +TLVDD+SR T
Sbjct: 626 FTCTICPMARQTRLPFTHSTTHSKSIFDLLHIDLWGPYHVPTYDNCRYCITLVDDYSRAT 685
Query: 236 WTYLLISK 259
WTYLL +K
Sbjct: 686 WTYLLSTK 693
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
score: 11.19) [Arabidopsis thaliana]
Length = 1633
Score = 77.0 bits (188), Expect = 2e-12
Identities = 33/85 (38%), Positives = 53/85 (62%)
Frame = +2
Query: 23 MPGCKGKPHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYF 202
+P K + HC LAK RL A+S F+L+H+D+WGP+ + +++G +YF
Sbjct: 519 IPSLKSVSSTASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWGPFSIESVDGFRYF 578
Query: 203 LTLVDDHSRCTWTYLLISKDQVKSV 277
LTLVDD +R TW Y++ +K +V ++
Sbjct: 579 LTLVDDCTRTTWVYMMKNKSEVSNI 603
>gb|AEJ72555.1| putative retroelement polyprotein [Malus domestica]
Length = 1249
Score = 77.0 bits (188), Expect = 2e-12
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +2
Query: 62 CETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCTWT 241
CE C +K RL + FE+VH D+WGP +V+ +G +YF+T VDD SRCTW
Sbjct: 470 CEVCHFSKQTRLPFDVSSTKSCKPFEIVHSDVWGPAPLVSFDGFRYFVTFVDDFSRCTWL 529
Query: 242 YLLISKDQVKSV 277
YLL SKD+V +V
Sbjct: 530 YLLKSKDEVINV 541
>gb|EXC35359.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 3263
Score = 76.6 bits (187), Expect = 3e-12
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = +2
Query: 53 SFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRC 232
SFHCE C +AK R +++F L+H D+WGP ++ ++G+++F+T VDDH+R
Sbjct: 546 SFHCEICQIAKHTRTVYPQIPYKPSTVFSLIHSDVWGPSRIKNVSGTRWFVTFVDDHTRV 605
Query: 233 TWTYLLISKDQVKSV 277
TW YL+ K +V +
Sbjct: 606 TWVYLMKEKSEVGQI 620
>emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]
Length = 1236
Score = 76.6 bits (187), Expect = 3e-12
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +2
Query: 62 CETCSLAKFHRLXXXXXXXHAASLFELVHIDLWGPYKVVALNGSKYFLTLVDDHSRCTWT 241
C+ C+LAK RL + FEL+H D+WGPYK+ +L+ +KYFLT+VDD+SR TW
Sbjct: 530 CDVCALAKQRRLPFSVSSISSVRPFELIHCDIWGPYKIASLSSAKYFLTIVDDYSRFTWV 589
Query: 242 YLLISKDQVK 271
+ + K + +
Sbjct: 590 FFMHHKSETQ 599
>ref|XP_004231415.1| PREDICTED: uncharacterized protein LOC101266877 [Solanum
lycopersicum]
Length = 1537
Score = 76.3 bits (186), Expect = 4e-12
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Frame = +2
Query: 8 SKMVHMPGCKGK----------PHDSFHCETCSLAKFHRLXXXXXXXHAASLFELVHIDL 157
+++ H+P K K P F C C +++ RL S+FEL+HIDL
Sbjct: 688 NRLGHVPFAKMKSITDLLAVFSPKQPFSCNICPMSRQQRLPFNHSNSQTKSIFELLHIDL 747
Query: 158 WGPYKVVALNGSKYFLTLVDDHSRCTWTYLLISKDQVKSV 277
WGPY + +YF+TLVDD+SR TWT LL +K V
Sbjct: 748 WGPYHAPTYDNYRYFITLVDDYSRSTWTQLLSTKSNALQV 787