BLASTX nr result

ID: Rheum21_contig00023596 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00023596
         (405 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006578464.1| PREDICTED: uncharacterized protein LOC102665...    57   3e-06
gb|EOY31493.1| DNA double-strand break repair rad50 ATPase, puta...    56   4e-06

>ref|XP_006578464.1| PREDICTED: uncharacterized protein LOC102665201 isoform X1 [Glycine
           max] gi|571450562|ref|XP_006578465.1| PREDICTED:
           uncharacterized protein LOC102665201 isoform X2 [Glycine
           max] gi|571450564|ref|XP_006578466.1| PREDICTED:
           uncharacterized protein LOC102665201 isoform X3 [Glycine
           max]
          Length = 461

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 33/87 (37%), Positives = 50/87 (57%)
 Frame = +1

Query: 13  ELQQMNRRLKSLEDERIVGRQDTPRPGIPRQEIFVEKDDAHMSLLRSIKDQLNSIEDEII 192
           E+Q++N+R++ LE ERI+ RQ+    G           +  + LL+ I+ QL  I+ E+ 
Sbjct: 384 EIQKLNQRIERLERERIIARQEVTHEG---------NGEEKLRLLKGIQRQLQIIQSEMK 434

Query: 193 SLRSSKKAPPEKQVDLTSLSEIMLHFW 273
           SL+ ++KA     V L SL E MLHFW
Sbjct: 435 SLK-TEKATTMDDVSLASLQEAMLHFW 460


>gb|EOY31493.1| DNA double-strand break repair rad50 ATPase, putative isoform 1
           [Theobroma cacao] gi|508784238|gb|EOY31494.1| DNA
           double-strand break repair rad50 ATPase, putative
           isoform 1 [Theobroma cacao]
          Length = 511

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
 Frame = +1

Query: 1   VHDF--ELQQMNRRLKSLEDERIVGRQDTPRPGIPRQEIFVEKDDAHMSLLRSIKDQLNS 174
           V+D+  ELQQ+ +R++ LE     GR +T      R EI   + +  ++LLR +++QLNS
Sbjct: 430 VNDYRSELQQLTQRVEQLES----GRNNT------RHEISEGRGE-ELNLLRELREQLNS 478

Query: 175 IEDEIISLRSSKKAPPEKQVDLTSLSEIMLHFW 273
           I+ E+ + R  KK+ P  +V L SL E MLHFW
Sbjct: 479 IQSEMRNWRP-KKSTPSDEVTLLSLKEAMLHFW 510


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