BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00021591
         (1251 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   512   e-142
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              489   e-135
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   489   e-135
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   461   e-127
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   452   e-124
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative...   451   e-124
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...   451   e-124
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...   449   e-124
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   448   e-123
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   446   e-123
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   444   e-122
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   441   e-121
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   436   e-119
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   434   e-119
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   432   e-118
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   426   e-116
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   421   e-115
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   420   e-115
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   417   e-114
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   409   e-111

>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  512 bits (1318), Expect = e-142
 Identities = 260/426 (61%), Positives = 324/426 (76%), Gaps = 15/426 (3%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGHIHL+  LL  S IGM DIL+KC+++VN  RKKK++   FK ILLSVS+CC F 
Sbjct: 735  DAGLVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKKKYGYHFKRILLSVSDCCFFN 794

Query: 183  QG-SKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWIN 359
               SKW+DMPCLKFFWQD  + D   R  HIMAD+ICPVLLD ++KGDPRI+ VN+IWIN
Sbjct: 795  HSDSKWTDMPCLKFFWQDMTDTD-LERTKHIMADMICPVLLDTIIKGDPRISTVNIIWIN 853

Query: 360  PDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAV 539
            P T+TW+ +      GELAVEVALEK+AV+ +GDAWR V+DCCLPVFHLIDTRRSIPYA+
Sbjct: 854  PGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAI 913

Query: 540  KQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAM 719
            KQ+Q+L GISCAFDQAVQRLSTSVTMV +GVLKEHL+LLASSMT  G L+GFN+ GIKA+
Sbjct: 914  KQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLLLASSMTCAGNLVGFNTSGIKAL 973

Query: 720  CRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWN 899
            CR L VQVPFTEATLYTPRKCFERA+EKCH+D+L+SIV SCSWGKRV++GTGA+FD+LW 
Sbjct: 974  CRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIVGSCSWGKRVSIGTGAKFDLLWE 1033

Query: 900  EKEATSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSP-KDSKAV 1076
             KE        DVY+FL LV + + EE D+G LG D++ FE +D YME  +SP +++KAV
Sbjct: 1034 TKEIEMADKPTDVYNFLHLVSSANEEEVDSGGLGEDIESFE-KDVYMEPALSPEQENKAV 1092

Query: 1077 FEDT-ELELDKS-DGSENSAWNS-------GNDNQATDPTWISQSG--NWDSKKSE--PE 1217
            FE+T E+ +D    G++ S+W++        N N+    +  ++ G  +W SKK +  PE
Sbjct: 1093 FEETLEIGVDSDITGADESSWDAFPSSGTGWNANKIDTGSGSAEGGWSSWGSKKDQANPE 1152

Query: 1218 TSAAWG 1235
             S+  G
Sbjct: 1153 DSSKTG 1158


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  489 bits (1258), Expect = e-135
 Identities = 250/420 (59%), Positives = 312/420 (74%), Gaps = 10/420 (2%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSF--- 179
            GLVGHIHL+K+LL D N+ MQ++ +KC++ +N+FRKKK    FFK I+LS  ECC+F   
Sbjct: 998  GLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHS 1057

Query: 180  CQGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWIN 359
            CQ SK SDMPCL FFWQ N + D   +++HI+A  ICPVLL  ++KGD R+  VN+IWI+
Sbjct: 1058 CQ-SKGSDMPCLLFFWQGNRD-DNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWIS 1115

Query: 360  PDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAV 539
            PDT+TWI N    + GELA+++ LEK AVK+ GDAWR V+D CLPV HLIDTRRSIPYA+
Sbjct: 1116 PDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAI 1175

Query: 540  KQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAM 719
            KQVQELLGISCAFDQAVQRLS SVTMVA+GVLKEHLILLA+SMT  G LIGFNSGG KA+
Sbjct: 1176 KQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKAL 1235

Query: 720  CRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWN 899
             R L +QVPFTEATL+TPRKCFE+A+EKCH DSLSSIVASCSWGK V VGTG+RFD+LW+
Sbjct: 1236 SRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWD 1295

Query: 900  EKE-ATSQKGGIDVYDFLQLVRN-THGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS-- 1067
             KE   +Q GGID+Y FL LVR+ ++G+E D  CLG +V+   +EDE +E GMSP+ S  
Sbjct: 1296 TKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSN 1355

Query: 1068 --KAVFEDTELELDKSDGSENSAWNSGNDNQATDPTW-ISQSGNWDSKKSEPETSAAWGS 1238
              K VFED+    +  +  EN    SG D       W ++Q+    +   +P   ++WG+
Sbjct: 1356 FEKPVFEDS---AEFQNTWENHVPGSGGD-------WAVNQNKETTASTLKPSAWSSWGT 1405


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  489 bits (1258), Expect = e-135
 Identities = 250/420 (59%), Positives = 312/420 (74%), Gaps = 10/420 (2%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSF--- 179
            GLVGHIHL+K+LL D N+ MQ++ +KC++ +N+FRKKK    FFK I+LS  ECC+F   
Sbjct: 938  GLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPFFKKIILSFRECCTFQHS 997

Query: 180  CQGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWIN 359
            CQ SK SDMPCL FFWQ N + D   +++HI+A  ICPVLL  ++KGD R+  VN+IWI+
Sbjct: 998  CQ-SKGSDMPCLLFFWQGNRD-DNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWIS 1055

Query: 360  PDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAV 539
            PDT+TWI N    + GELA+++ LEK AVK+ GDAWR V+D CLPV HLIDTRRSIPYA+
Sbjct: 1056 PDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAI 1115

Query: 540  KQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAM 719
            KQVQELLGISCAFDQAVQRLS SVTMVA+GVLKEHLILLA+SMT  G LIGFNSGG KA+
Sbjct: 1116 KQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKAL 1175

Query: 720  CRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWN 899
             R L +QVPFTEATL+TPRKCFE+A+EKCH DSLSSIVASCSWGK V VGTG+RFD+LW+
Sbjct: 1176 SRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWD 1235

Query: 900  EKE-ATSQKGGIDVYDFLQLVRN-THGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS-- 1067
             KE   +Q GGID+Y FL LVR+ ++G+E D  CLG +V+   +EDE +E GMSP+ S  
Sbjct: 1236 TKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSN 1295

Query: 1068 --KAVFEDTELELDKSDGSENSAWNSGNDNQATDPTW-ISQSGNWDSKKSEPETSAAWGS 1238
              K VFED+    +  +  EN    SG D       W ++Q+    +   +P   ++WG+
Sbjct: 1296 FEKPVFEDS---AEFQNTWENHVPGSGGD-------WAVNQNKETTASTLKPSAWSSWGT 1345


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  461 bits (1185), Expect = e-127
 Identities = 248/430 (57%), Positives = 311/430 (72%), Gaps = 15/430 (3%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQF---ALFFKGILLSVSECC 173
            D GLVGHIHL+K+LL D  I M DIL KCQ+ + +F KKK+      FFK   LSVSECC
Sbjct: 931  DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECC 990

Query: 174  SFCQG--SKWSDMPCLKFFWQ--DNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAV 341
            SF Q    K S+MPCL F  +   +  LD+ S V+   A++I PVLL+ ++KGDPRI + 
Sbjct: 991  SFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL---ANMIYPVLLETIIKGDPRIYSA 1047

Query: 342  NVIWINPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRR 521
            N+IWI+PDT+ WI N S  + GELA++V LEK  VK+SGDAWRTV+D CLPVFHLIDTRR
Sbjct: 1048 NIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRR 1107

Query: 522  SIPYAVKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNS 701
            S+PYA+KQVQELLG+SCAF+QAVQRLS SVTMVA+GVLKEHLILLA+SMT  G L+GFNS
Sbjct: 1108 SVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNS 1167

Query: 702  GGIKAMCRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGAR 881
            GG KA+ R+L VQVPFTEATL+TPRKCFE+AAEKCH D+LSS+VA+CSWGK VAVGTG+R
Sbjct: 1168 GGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSR 1227

Query: 882  FDILW-NEKEATSQKGGIDVYDFLQLVRNTHG-EEEDNGCLGVDVDKFEMEDEYMEDGMS 1055
            FD+LW  E E  +Q  G+DVYDFL +VR++ G EE D GCLG +VD   +EDE+ +  +S
Sbjct: 1228 FDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEESDTGCLGEEVD--GLEDEF-DWSLS 1284

Query: 1056 PK----DSKAVFED-TELELDKSDGSENSAWNSGND-NQATDPTWISQSGNWDSKKSEPE 1217
            P+      K VFED  E +    +  EN+ W+S  D  ++++  W     + +   S   
Sbjct: 1285 PEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWR 1344

Query: 1218 TSAAWGSALD 1247
            T  AWG + D
Sbjct: 1345 TEGAWGKSSD 1354


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  452 bits (1163), Expect = e-124
 Identities = 244/430 (56%), Positives = 308/430 (71%), Gaps = 15/430 (3%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQF---ALFFKGILLSVSECC 173
            D GLVGHIHL+K+LL D  I M DIL KCQ+ + +F KKK+      FFK   LS+SECC
Sbjct: 932  DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECC 991

Query: 174  SFCQG--SKWSDMPCLKFFWQ--DNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAV 341
            SF Q    K S+MPCL F  +   +  LD+ S V+   A++I PVLL+ ++KGDPRI + 
Sbjct: 992  SFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVL---ANMIYPVLLETIIKGDPRICSA 1048

Query: 342  NVIWINPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRR 521
            N+IWI+PDT+ WI N S  + GELA++V LEK  VK+SGDAWRTV+D CLPVFHLIDTRR
Sbjct: 1049 NIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRR 1108

Query: 522  SIPYAVKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNS 701
            S+PYA+KQVQELLG+SCAF+QAVQRLS SVTMVA+GVLKEHLILLA+SMT  G L+GFNS
Sbjct: 1109 SVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNS 1168

Query: 702  GGIKAMCRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGAR 881
            GG KA+ R+L VQVPFTEATL+ PRKCFE+AAEK H D+LSS+VA+CSWGK VAVGTG+R
Sbjct: 1169 GGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAACSWGKHVAVGTGSR 1228

Query: 882  FDILW-NEKEATSQKGGIDVYDFLQLVRNTHG-EEEDNGCLGVDVDKFEMEDEYMEDGMS 1055
            FD+LW  E E  +Q  G+DVYDFL +VR++ G EE D GCLG +VD   +EDE+ +  +S
Sbjct: 1229 FDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVD--GLEDEF-DWSLS 1285

Query: 1056 PK----DSKAVFED-TELELDKSDGSENSAWNSGND-NQATDPTWISQSGNWDSKKSEPE 1217
            P+      K +FED  E +    +  EN  W+S  D  ++++  W     + +   S   
Sbjct: 1286 PEHNLCSDKPIFEDLVEDQSWLENKQENENWDSEADCRKSSEDKWEKLGTSLEKPSSGWR 1345

Query: 1218 TSAAWGSALD 1247
            T  AWG + D
Sbjct: 1346 TEGAWGKSSD 1355


>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao]
          Length = 1675

 Score =  451 bits (1160), Expect = e-124
 Identities = 239/415 (57%), Positives = 294/415 (70%), Gaps = 8/415 (1%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQ- 185
            GLVGHI L+K +L + NI MQ++  KCQ+ + +FRKKK+ A  FK   L  SECCS  Q 
Sbjct: 934  GLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTADTFKRTDLFFSECCSIQQS 993

Query: 186  -GSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
             G KW DM CL FF + N   D     +  + D+I PVLL+ V+KGDPRI + N+IW++P
Sbjct: 994  CGGKWLDMSCLMFFCR-NTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSP 1052

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT+TWI + S  Q GELA++V LEK AVK++GDAWRTV+DCCLPV +LIDT+RSIPYA+K
Sbjct: 1053 DTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIK 1112

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            QVQELLGISCAF+QAVQRLSTSV+MVARGVLKEHLILLA+SMT  G LIGFNSGG KA+ 
Sbjct: 1113 QVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALS 1172

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R+L +QVPF+EATL+TPRKCFERAAEKCH+DSLSSIVASCSWGK VAVGTG+RFD+LW+ 
Sbjct: 1173 RSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDR 1232

Query: 903  KE-ATSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS---- 1067
            KE    QK GIDVY+FL ++ +  G      CLG +VD     D   E  +SP+ S    
Sbjct: 1233 KEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLD 1292

Query: 1068 KAVFED-TELELDKSDGSENSAWNSGNDNQATDPTWISQSGNWDSKKSEPETSAA 1229
            K VFED  + E D       S+W  G        +W + S  W+ K  + +  AA
Sbjct: 1293 KPVFEDAADFENDLDFQPAESSWEKGVSLDKVS-SW-NVSSAWNKKAEDGDKFAA 1345


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  451 bits (1160), Expect = e-124
 Identities = 239/415 (57%), Positives = 294/415 (70%), Gaps = 8/415 (1%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQ- 185
            GLVGHI L+K +L + NI MQ++  KCQ+ + +FRKKK+ A  FK   L  SECCS  Q 
Sbjct: 934  GLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTADTFKRTDLFFSECCSIQQS 993

Query: 186  -GSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
             G KW DM CL FF + N   D     +  + D+I PVLL+ V+KGDPRI + N+IW++P
Sbjct: 994  CGGKWLDMSCLMFFCR-NTKDDHLDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSP 1052

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT+TWI + S  Q GELA++V LEK AVK++GDAWRTV+DCCLPV +LIDT+RSIPYA+K
Sbjct: 1053 DTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIK 1112

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            QVQELLGISCAF+QAVQRLSTSV+MVARGVLKEHLILLA+SMT  G LIGFNSGG KA+ 
Sbjct: 1113 QVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALS 1172

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R+L +QVPF+EATL+TPRKCFERAAEKCH+DSLSSIVASCSWGK VAVGTG+RFD+LW+ 
Sbjct: 1173 RSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDR 1232

Query: 903  KE-ATSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS---- 1067
            KE    QK GIDVY+FL ++ +  G      CLG +VD     D   E  +SP+ S    
Sbjct: 1233 KEVGFDQKSGIDVYNFLHMLSSASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLD 1292

Query: 1068 KAVFED-TELELDKSDGSENSAWNSGNDNQATDPTWISQSGNWDSKKSEPETSAA 1229
            K VFED  + E D       S+W  G        +W + S  W+ K  + +  AA
Sbjct: 1293 KPVFEDAADFENDLDFQPAESSWEKGVSLDKVS-SW-NVSSAWNKKAEDGDKFAA 1345


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  449 bits (1156), Expect = e-124
 Identities = 243/457 (53%), Positives = 305/457 (66%), Gaps = 46/457 (10%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKK------QFALFFKGILLSVS 164
            D GLVGHIHL++ +L + NIG+ DIL+KCQ+ +N+FR+KK           FK  +L  S
Sbjct: 938  DAGLVGHIHLNEDMLRELNIGVHDILQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFAS 997

Query: 165  ECCSFCQG--SKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAA 338
            E CSF      K SD PCL FF Q   +L+ T+ + +  AD+ICPVLL+ ++KGDPRI +
Sbjct: 998  EHCSFHHSCAEKRSDSPCLMFFLQATDDLETTTTLQYY-ADLICPVLLETIIKGDPRIGS 1056

Query: 339  VNVIWINPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTR 518
             N+IWI+PDT+TWI + +  Q GE A+++ LEK  +K+SGDAWRTV+D CLPV HLIDTR
Sbjct: 1057 ANIIWIDPDTTTWIRSPNKSQKGEWALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTR 1116

Query: 519  RSIPYAVKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFN 698
            RSIPYA+KQ+QELLG+SCAFDQAVQRLST+VTMVA+GVLKEHLILLA+SMT  G  +GFN
Sbjct: 1117 RSIPYAIKQIQELLGVSCAFDQAVQRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFN 1176

Query: 699  SGGIKAMCRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGA 878
            S G KA+ R L +QVPFTEATL+TPRKCFERAAEKCH+DSL+SIVASCSWGK VAVGTG 
Sbjct: 1177 SSGYKALSRALNIQVPFTEATLFTPRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGV 1236

Query: 879  RFDILWNEKEA-TSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMS 1055
            RFD+LW+ +E   +Q+GG+DV++FL +V   + EE   G LG +VD   + DE  +   S
Sbjct: 1237 RFDVLWDTREVELTQEGGLDVFNFLHMVSTANVEEATTGALGAEVDDLMLVDEMADSSFS 1296

Query: 1056 PK----DSKAVFED-TELELDKSDGSENSAW----------NSGND--------NQATDP 1166
            P+      + VFED  E +    D  E S W          N G D          A   
Sbjct: 1297 PELNSSFDRPVFEDLVEFDDKLGDLPEKSNWEKDSSFHTDSNGGKDWSVDKNVGTVAVPD 1356

Query: 1167 TWIS--------QSGN-----WDSKKSEP-ETSAAWG 1235
             W S        Q  N      DSKKS   +TS+AWG
Sbjct: 1357 VWSSWGTEKGKTQDSNSAEAQLDSKKSSVLDTSSAWG 1393


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  448 bits (1152), Expect = e-123
 Identities = 229/422 (54%), Positives = 303/422 (71%), Gaps = 10/422 (2%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGHIHL++ +L    I M ++ +KCQ+ +N+F +KK+   FF+   L  SE CS  
Sbjct: 939  DAGLVGHIHLNEAMLEKLKINMSEVYQKCQERLNSFSRKKKVFHFFRKTELFFSESCS-- 996

Query: 183  QGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
              S  S  PC+   W D  +LD+T++V+   AD+ICPVLLD +++GDPRI++ N+IW+NP
Sbjct: 997  --SLNSSAPCVTILWPDGDDLDQTTKVL---ADMICPVLLDTIIQGDPRISSANIIWVNP 1051

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
             T+TW+ N S    GELA++V LEK+AVK+SGDAWR ++D CLPV HLIDTRRS PYA+K
Sbjct: 1052 GTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIK 1111

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q+QELLGISC FDQA+QRL+ SV MVA+GVL+EHLILLASSMT  G L+GFN+GG K + 
Sbjct: 1112 QIQELLGISCTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLA 1171

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R L +QVPFT+ATL+TPRKCFERAAEK H DSLSSIVASCSWGK VAVGTG+RFDI+W+ 
Sbjct: 1172 RQLNIQVPFTDATLFTPRKCFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDP 1231

Query: 903  KEATSQK-GGIDVYDFLQLVRN-THGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDSK-- 1070
            KE  S +  G+DVY+FL +V+   +G+EE+N CLG D+D   ++D+ M+ GMSP+ +   
Sbjct: 1232 KEVKSNEIEGMDVYNFLNMVKGLANGDEENNACLGEDIDDL-LDDDNMDWGMSPEHTSGF 1290

Query: 1071 -AVFEDTELELDKSDGSENSAWNSGND-NQATDPTWISQSGNWDSKKSEPETSAA----W 1232
             AVF+++    +  +GS ++ W+S  D N+ T   W      W   KSE +   A    W
Sbjct: 1291 DAVFDES---FELLNGSTSNGWDSNKDQNKTTTNDW----SGWGQNKSEIQVDVAETDQW 1343

Query: 1233 GS 1238
            GS
Sbjct: 1344 GS 1345


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  446 bits (1147), Expect = e-123
 Identities = 237/411 (57%), Positives = 295/411 (71%), Gaps = 8/411 (1%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGH+HL K  L D NI  Q ILEKCQ+ VNTFRKKK+    FK  +L VSE CSF 
Sbjct: 941  DAGLVGHVHLDKRKLQDLNITAQVILEKCQETVNTFRKKKKVGNLFKKTILLVSESCSFQ 1000

Query: 183  QGSKWSDMPCLKFFWQ--DNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWI 356
            Q     + PCL FFWQ  D+++L+RTS   +I+AD+ICPVLL+ ++KGD RI+  N+IW 
Sbjct: 1001 QCI--DESPCLMFFWQGADDVHLERTS---NILADMICPVLLETIIKGDHRISCANIIWA 1055

Query: 357  NPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYA 536
             P+T+TWI N S  Q GELA+++ LEK  VK+SGDAWR V+D CLPV HLI+T RSIPYA
Sbjct: 1056 TPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRIVLDSCLPVLHLINTTRSIPYA 1115

Query: 537  VKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKA 716
            +KQVQELLG+SCAFD AVQRLS SVTMVA+GVLKEHLILL +SMT  G+LIGF +GG K 
Sbjct: 1116 IKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKT 1175

Query: 717  MCRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILW 896
            + R+L +QVPFTEATL+TPRKCFE+AAEKCH DSLSSIVASC+WGK V VGTG+ FD+LW
Sbjct: 1176 LSRSLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLW 1235

Query: 897  NEKEA-TSQKGGIDVYDFLQLVRNTHGEEED-NGCLGVDVDKFEMEDEYMEDGMSPK--- 1061
            + KEA  + +G +DVY FL +VR+T G EE    CLG +VD   +EDE  +  +SP+   
Sbjct: 1236 DTKEACLNPEGSMDVYSFLNMVRSTAGGEESVTACLGAEVDDLMLEDE--DWNLSPEHNS 1293

Query: 1062 -DSKAVFEDTELELDKSDGSENSAWNSGNDNQATDPTWISQSGNWDSKKSE 1211
               K  FED+  E     G++ +  N    +   D +    SGNWD  K++
Sbjct: 1294 SSDKPTFEDS-AEFQDFLGNQPAESNWEKISSLKDRS--RSSGNWDVDKND 1341


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  444 bits (1143), Expect = e-122
 Identities = 230/430 (53%), Positives = 302/430 (70%), Gaps = 19/430 (4%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKK-----QFALFFKGILLSVSE 167
            D+GLVGH+HL+++LL + N+GM +IL+KC++ +N+FR+KK          FK  +LS SE
Sbjct: 934  DSGLVGHVHLNEMLLRELNLGMSEILQKCEETINSFRRKKVGKKMNIGEIFKRTILSYSE 993

Query: 168  CCSFCQGS--KWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAV 341
            CCSF Q S    S  PCL FF+QD  N      +  ++AD ICPVLL  V+KGDPRI++ 
Sbjct: 994  CCSFHQSSADNRSGSPCLMFFYQD-FNNSELEAISQMLADFICPVLLKTVIKGDPRISSA 1052

Query: 342  NVIWINPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRR 521
            N+IWIN +++TWI + +    GELA++V LEK  VK+SGDAWR  +DCCLPV HLIDTRR
Sbjct: 1053 NIIWINSESTTWIRSPNKSLKGELALDVVLEKSVVKQSGDAWRIALDCCLPVLHLIDTRR 1112

Query: 522  SIPYAVKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNS 701
            SIPYA+KQVQELLG+SCAFDQAVQRL+ +V MVA+GVLKEHLILLA+SMT  G  +GFN 
Sbjct: 1113 SIPYAIKQVQELLGVSCAFDQAVQRLAKAVAMVAKGVLKEHLILLANSMTCAGNFVGFNP 1172

Query: 702  GGIKAMCRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGAR 881
            GG KA+ R L +QVPFTEATL+TP+KCFERAAEKCH+DSLSSIVASCSWGK VAVGTG+R
Sbjct: 1173 GGYKALSRALNIQVPFTEATLFTPKKCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSR 1232

Query: 882  FDILWNEKE-ATSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSP 1058
            F+ILW+ KE   ++ GG+DV++FL +V   +GEE     LG ++D    + E  +  +SP
Sbjct: 1233 FEILWDTKEGGLNEVGGVDVFNFLHMVNAANGEELTTAALGTEIDDLVPDYENGDVSLSP 1292

Query: 1059 K----DSKAVFEDTELELDKSDGSEN----SAWNSGNDNQATDPTW-ISQSGNWD--SKK 1205
            +      K VFED    ++  D  EN    S+W+S          W   + G  D  S +
Sbjct: 1293 EHNSSSDKPVFEDI---VEFPDNFENVPGKSSWDSIYTASTGGKDWGAVKIGTQDGISAE 1349

Query: 1206 SEPETSAAWG 1235
            ++ ++++AWG
Sbjct: 1350 TQADSTSAWG 1359


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  441 bits (1134), Expect = e-121
 Identities = 232/436 (53%), Positives = 306/436 (70%), Gaps = 23/436 (5%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQ- 185
            GL+GHI L++  L +  I + ++ E+CQ+ +++F+KKK+    FK I+LSVSE CSFC  
Sbjct: 938  GLIGHIRLNQGQLENLGISVLEVHERCQENISSFQKKKKIGNLFKRIVLSVSEFCSFCHN 997

Query: 186  -GSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
             GSK  + PCL+F W D  + D   RV HI+AD+ICP+LLD V+KGDPR+++ N+ WI+P
Sbjct: 998  SGSKCLNAPCLRFSWPDASD-DHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISP 1056

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT +WI + S  Q GELA+++ LEK+AVK+ GDAWR +MD CLPV HLIDT RSIPYA+K
Sbjct: 1057 DTMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIK 1116

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            QVQEL+GISCAF+QAV+RLSTSVTMV +GVLK+HL+LLA+SMT  G L+GFN+GGIKA+ 
Sbjct: 1117 QVQELIGISCAFEQAVKRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALS 1176

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R+L VQ+PFTEATL+TPRKCFERAAEKCH+DSLSSIVASCSWGK VAVGTG+RF++L N 
Sbjct: 1177 RSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNT 1236

Query: 903  KEAT-SQKGGIDVYDFLQLVRNTHGEE-EDNGCLGVDVDKFEMEDEYMEDGMSP-KDSKA 1073
            +    +     DVY FL LVRNT  +E E   CLG ++D+ E EDE M   +SP +DS +
Sbjct: 1237 RNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELE-EDEDMGLYLSPNRDSGS 1295

Query: 1074 ---VFEDTELELDKSDGSE-----NSAWNSGNDNQATDPTWISQSGNWD----------S 1199
                FED   E D ++  +      SAW   +         +   G+WD           
Sbjct: 1296 EMPTFED-RAEFDYNENLDEGKPSGSAWEKASSGS------VKSGGSWDMAGKTQNGAEE 1348

Query: 1200 KKSEPETSAAWGSALD 1247
              ++ ++ +AWG  +D
Sbjct: 1349 GVNQSDSWSAWGKKVD 1364


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  436 bits (1121), Expect = e-119
 Identities = 225/419 (53%), Positives = 304/419 (72%), Gaps = 9/419 (2%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQ- 185
            GLVGH+HL+++LL + NI M ++L +CQ+ +++F+KKK+       +  S+SE C+F Q 
Sbjct: 936  GLVGHVHLNRMLLKELNIDMTEVLRRCQETMSSFKKKKK--KIAHALRFSISEHCAFHQW 993

Query: 186  -GSKWSDMPCLKFFWQD-NINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWIN 359
             G +  DMPCL F+ Q  +++L+RT+   HI+AD++ P+L + ++KGDPRI + +VIWI+
Sbjct: 994  NGEESIDMPCLIFWHQTRDVHLERTA---HILADIVFPLLSETIIKGDPRIKSASVIWIS 1050

Query: 360  PDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAV 539
            PD+++W  N S  Q GELA++V LEK AVK++GDAWR V+DCCLPV HLIDTRRS+PYA+
Sbjct: 1051 PDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAI 1110

Query: 540  KQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAM 719
            KQVQELLGISCAFDQ +QRLS SV+MV++GVL +HLILLA+SMT TG +IGFNSGG KA+
Sbjct: 1111 KQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKAL 1170

Query: 720  CRTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWN 899
             R L +QVPFTEATL+TPRKCFE+AAEKCH DSLSSIVASCSWGK VAVGTG+RFDILW+
Sbjct: 1171 SRALNIQVPFTEATLFTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWD 1230

Query: 900  EKE-ATSQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSPK----D 1064
            +KE    Q   +DVY+FL +VR+   EE  + CLG +++   +EDEY E  +SP+     
Sbjct: 1231 QKELGCKQDDVVDVYNFLHMVRSGKSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTS 1290

Query: 1065 SKAVFEDT-ELELDKSDGSENSAWNSGNDNQATDPTWISQSGNWDSKKSEPETSAAWGS 1238
             K VFED+ E E    +    S W       A      +  G W+S ++   T+++ G+
Sbjct: 1291 EKPVFEDSAEFEHCLDNYPGESKWEKAPSLGAVS----TGGGQWESNENGKATNSSDGN 1345


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  434 bits (1116), Expect = e-119
 Identities = 233/434 (53%), Positives = 299/434 (68%), Gaps = 29/434 (6%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQ- 185
            GL+GHI L++  L +  I + ++ E+CQ+ +++FR KK+    FK I+LSVSE CSFC  
Sbjct: 489  GLIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNLFKRIVLSVSEFCSFCHN 548

Query: 186  -GSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
             GSK  + PCL+F W D  + D   RV HI+AD+I P+LLD V+KGDPR+++ N+ WI+P
Sbjct: 549  SGSKCLNAPCLRFSWPDASD-DHLERVSHILADMIXPILLDTVIKGDPRVSSANIAWISP 607

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT +WI + S  Q GELA+++ LEK+AVK  GDAWR +MD CLPV HLIDT RSIPYA+K
Sbjct: 608  DTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTTRSIPYAIK 667

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            QVQEL+GISCAF+QAV RLSTSVTMV +GVLK+HL+LLA+SMT  G L+GFN+GGIKA+ 
Sbjct: 668  QVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALS 727

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R+L VQ+PFTEATL+TPRKCFERAAEKCH+DSLSSIVASCSWGK VAVGTG+RF++L N 
Sbjct: 728  RSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNT 787

Query: 903  KEAT-SQKGGIDVYDFLQLVRNTHGEE-EDNGCLGVDVDKFEMEDEYMEDGMSP-KDSKA 1073
            +    +     DVY FL LVRNT  +E E   CLG ++D+ E EDE M   +SP +DS +
Sbjct: 788  RNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELE-EDEDMGLYLSPNRDSGS 846

Query: 1074 ---VFED-------TELELDKSDGS-----------ENSAWNSGNDNQATDPTWISQSGN 1190
                FED         L+  K  GS              +W+     Q      ++QS +
Sbjct: 847  EMPTFEDRAEFDYNENLDEGKPSGSAWEEASSGSVKSGGSWDMAGKTQNGAEEGVNQSDS 906

Query: 1191 WDS---KKSEPETS 1223
            W S   K  EPE +
Sbjct: 907  WSSWGKKVDEPENN 920


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  432 bits (1110), Expect = e-118
 Identities = 220/421 (52%), Positives = 301/421 (71%), Gaps = 6/421 (1%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGHI+L +++L +  I M ++ EKC + + +F +KK+   + K I LS SE CS  
Sbjct: 940  DAGLVGHIYLDEMMLEELKISMANVFEKCLERLKSFSRKKKVNQYLKNIELSFSESCS-- 997

Query: 183  QGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
              S     PCL F W  N + D  + V  ++++ ICPVL + ++KGDPRI++ ++IW++P
Sbjct: 998  --SSHPAAPCLTF-WLKNHDSDLDNAVK-VLSENICPVLFETIIKGDPRISSASIIWVSP 1053

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT+TW+ N      GELA+++ LE++AVK+SGDAWR V+D CLPV HLIDTRRSIPYA+K
Sbjct: 1054 DTNTWVRNPYKSSNGELALDIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIK 1113

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q+QELLGISC FDQA+QR++ SV MVA+GVL+EHLILLASSMT  G L+GFN+GG KA+ 
Sbjct: 1114 QIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALS 1173

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R L +QVPFT+ATL+TP+KCFERAAEKCH DSLSSIVASCSWGK VAVGTG++FDI+W+ 
Sbjct: 1174 RQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDS 1233

Query: 903  KEATSQK-GGIDVYDFLQLVRN-THGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS--- 1067
             E  S +  G+DVY FL +V++ T+GEEE + CLG D+D   +E+EYM+ GMSP+ +   
Sbjct: 1234 SEIKSNEIEGMDVYSFLHMVKSVTNGEEETDACLGEDIDDL-LEEEYMDLGMSPQHNSGF 1292

Query: 1068 KAVFEDTELELDKSDGSENSAWN-SGNDNQATDPTWISQSGNWDSKKSEPETSAAWGSAL 1244
            +AVFE+    L   +GS ++ W+ S N  Q+    W   + +    +SE     +WG  +
Sbjct: 1293 EAVFEENPEVL---NGSTSNGWDVSSNQTQSKTNEWSGWASSNKDGRSETAQENSWGKTV 1349

Query: 1245 D 1247
            +
Sbjct: 1350 N 1350


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  426 bits (1095), Expect = e-116
 Identities = 223/422 (52%), Positives = 300/422 (71%), Gaps = 11/422 (2%)
 Frame = +3

Query: 9    GLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFCQG 188
            GLVGHIHL++VLL + +IGM +IL+KC++ +N+ RKKK      K  +LSVSECC+F + 
Sbjct: 937  GLVGHIHLNEVLLKEMDIGMNEILQKCEEAINSVRKKK-LGKHLKKAVLSVSECCTFHKS 995

Query: 189  SK--WSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
                 S+ PCL    ++N+N D       I+AD ICP LL+ ++KGD RI++  + W++ 
Sbjct: 996  GLDGTSEFPCLLISIRENMN-DTLEESSKILADSICPFLLETIIKGDSRISSAKITWLSS 1054

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT++ I +  +  +GELAV+V L+K A+KRSGDAWR V+D CLPV HLIDTRRSIPY +K
Sbjct: 1055 DTTS-IRSPQNSDMGELAVDVVLDKSAIKRSGDAWRIVIDSCLPVLHLIDTRRSIPYGIK 1113

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q+QELLGISCAFDQAVQRLSTSV+MV++GVLKEHLILLA+SMT  G LIGFNSGG KA+ 
Sbjct: 1114 QIQELLGISCAFDQAVQRLSTSVSMVSKGVLKEHLILLANSMTYAGNLIGFNSGGYKALT 1173

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R+L VQVPFTEATL TP++CFERAAEKCH+DSL+SIVASCSWGK VAVGTG+RFDILW+ 
Sbjct: 1174 RSLNVQVPFTEATLITPKRCFERAAEKCHVDSLTSIVASCSWGKHVAVGTGSRFDILWDT 1233

Query: 903  KEAT-SQKGGIDVYDFLQLVRNTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKD---SK 1070
            ++   +Q GG+DV +FL +V   +GEE    CLG ++D     D+  E  +SP++    +
Sbjct: 1234 RKVEFNQAGGVDVNNFLHMVSTAYGEEASTACLGEEIDDLMPGDDIAELCLSPENFNSDR 1293

Query: 1071 AVFEDTE--LELDKSDGSENSAWNSGNDNQATDPTWISQSGNWDSKK---SEPETSAAWG 1235
             VFED +   ++ + D    S+W    DN ++  +  S    W S     ++ +  ++WG
Sbjct: 1294 PVFEDIDEFQDISEKDLPGKSSW----DNLSSFRSGSSSGKEWGSNNNVGTKYDVGSSWG 1349

Query: 1236 SA 1241
            +A
Sbjct: 1350 TA 1351


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  421 bits (1082), Expect = e-115
 Identities = 219/425 (51%), Positives = 296/425 (69%), Gaps = 10/425 (2%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGHI+L +++L +  I M  + +KC + + +F +KK+     K I LS SE CS  
Sbjct: 940  DVGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSFSQKKKVNQSLKNIELSFSESCS-- 997

Query: 183  QGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
              S     PCL F W  N + D  + V  ++A+ ICPVL   +++GDPRI++ ++IW++P
Sbjct: 998  --SSHPAAPCLTF-WLKNYDSDLDNAVK-VLAEKICPVLFKTIIQGDPRISSASIIWVSP 1053

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT+TW+ N      GELA+++ LEK+AVK+SGDAWR V+D CLPV HLIDTRRSIPYA+K
Sbjct: 1054 DTNTWVRNPYKSSNGELALDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIK 1113

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q+QELLGISC FDQA+QR++ SV MVA+GVL+EHLILLASSMT  G L+GFN GG KA+ 
Sbjct: 1114 QIQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALS 1173

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWNE 902
            R L +QVPFT+ATL+TP+KCFERAAEKCH DSLSSIVASCSWGK VAVGTG++FD++W+ 
Sbjct: 1174 RQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDA 1233

Query: 903  KEATSQK-GGIDVYDFLQLVRN-THGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS--- 1067
             E  S +  G+DVY FL +V++ T+GEEE + CLG D+D   +E+EYM+ GMSP+ +   
Sbjct: 1234 NEIKSNEIEGMDVYSFLHMVKSFTNGEEETDACLGEDIDDL-LEEEYMDLGMSPQHNSGF 1292

Query: 1068 KAVFEDTELELDKSDGSENSAWN-SGNDNQATDPTW----ISQSGNWDSKKSEPETSAAW 1232
            +AVFE+    L   +GS ++ W+ S N  ++    W     S        +SE     +W
Sbjct: 1293 EAVFEENPEVL---NGSTSNGWDVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW 1349

Query: 1233 GSALD 1247
            G  ++
Sbjct: 1350 GKTVN 1354


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  420 bits (1079), Expect = e-115
 Identities = 224/453 (49%), Positives = 301/453 (66%), Gaps = 40/453 (8%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLV HI L +V L +  I M ++ +KCQ+++N+F +KK+ + FFK   L  SE CS  
Sbjct: 1021 DAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFCS-- 1078

Query: 183  QGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
                    PC+ F W D ++LD+T++V+   AD+ICPVLL+ +++GDPRI++ ++IW+NP
Sbjct: 1079 -------APCVTFLWPDGVDLDQTTKVL---ADMICPVLLETIIQGDPRISSASIIWVNP 1128

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
             T+TW+ N S    GELA++V LEK+AVK+SGDAWR V+D CLPV HLIDTRRSIPYA+K
Sbjct: 1129 GTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIK 1188

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q+QELLGI+C FDQA+QRL+ SV MVA+GVL+EHLILLASSMT  G L+GFN+GG K + 
Sbjct: 1189 QIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLA 1248

Query: 723  RTLGVQVPFTEATLY--------------------------TPRKCFERAAEKCHLDSLS 824
            R L +QVPFT+ATL+                          TPRKCFERAAEK H DSLS
Sbjct: 1249 RQLDIQVPFTDATLFVSALVISKLQDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSDSLS 1308

Query: 825  SIVASCSWGKRVAVGTGARFDILWNEKE-ATSQKGGIDVYDFLQLVRN-THGEEEDNGCL 998
            SIVASCSWGK VAVGTG++FDI+W+ KE  T++  G++VY FL +V+   +GEEE N CL
Sbjct: 1309 SIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKGLANGEEETNACL 1368

Query: 999  GVDVDKFEMEDEYMEDGMSPKDSK---AVFEDTELELDKSDGSENSAWNSGNDNQATDPT 1169
            G D+D    +DE  +  MSP+ +    AVF++T    +  +GS ++ W+S  D      T
Sbjct: 1369 GEDIDDL-FDDENGDFDMSPQHASGFDAVFDET---FELPNGSTSNGWDSNKDQIDQPNT 1424

Query: 1170 WISQSGNWDSKKSEPET---------SAAWGSA 1241
              +    W   KS+ +          S+AWG+A
Sbjct: 1425 NSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAA 1457


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  417 bits (1072), Expect = e-114
 Identities = 226/449 (50%), Positives = 304/449 (67%), Gaps = 39/449 (8%)
 Frame = +3

Query: 9    GLVGHIHLSKV--LLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            GLVGH+HL++V  LL + NI M ++L +CQ+ +++F+KKK+       +  S+SE C+F 
Sbjct: 966  GLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKKK--KIAHALRFSISEHCAFH 1023

Query: 183  Q--GSKWSDMPCLKFFWQD-NINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIW 353
            Q  G +  DMPCL F+ Q  +++L+RT+   HI+AD++ P+L + ++KGDPRI + +VIW
Sbjct: 1024 QWNGEESIDMPCLIFWHQTRDVHLERTA---HILADIVFPLLSETIIKGDPRIKSASVIW 1080

Query: 354  INPDTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPY 533
            I+PD+++W  N S  Q GELA++V LEK AVK++GDAWR V+DCCLPV HLIDTRRS+PY
Sbjct: 1081 ISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPY 1140

Query: 534  AVKQVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIK 713
            A+KQVQELLGISCAFDQ +QRLS SV+MV++GVL +HLILLA+SMT TG +IGFNSGG K
Sbjct: 1141 AIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYK 1200

Query: 714  AMCRTLGVQVPFTEATLY----------------------------TPRKCFERAAEKCH 809
            A+ R L +QVPFTEATL+                            TPRKCFE+AAEKCH
Sbjct: 1201 ALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTTPRKCFEKAAEKCH 1260

Query: 810  LDSLSSIVASCSWGKRVAVGTGARFDILWNEKE-ATSQKGGIDVYDFLQLVRNTHGEEED 986
             DSLSSIVASCSWGK VAVGTG+RFDILW++KE    Q   +DVY+FL +VR+   EE  
Sbjct: 1261 KDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSGKSEEPT 1320

Query: 987  NGCLGVDVDKFEMEDEYMEDGMSPK----DSKAVFEDT-ELELDKSDGSENSAWNSGNDN 1151
            + CLG +++   +EDEY E  +SP+      K VFED+ E E    +    S W      
Sbjct: 1321 SACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLDNYPGESKWEKAPSL 1380

Query: 1152 QATDPTWISQSGNWDSKKSEPETSAAWGS 1238
             A      +  G W+S ++   T+++ G+
Sbjct: 1381 GAVS----TGGGQWESNENGKATNSSDGN 1405


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  409 bits (1050), Expect = e-111
 Identities = 211/424 (49%), Positives = 291/424 (68%), Gaps = 10/424 (2%)
 Frame = +3

Query: 3    DNGLVGHIHLSKVLLNDSNIGMQDILEKCQDEVNTFRKKKQFALFFKGILLSVSECCSFC 182
            D GLVGHI+L +++L +  I M  + +KC + + +F  +K+   F K   LS SE CS  
Sbjct: 936  DAGLVGHIYLDEMMLEELKISMAHVFQKCLERLKSFSPRKKANQFLKRTELSYSESCS-- 993

Query: 183  QGSKWSDMPCLKFFWQDNINLDRTSRVMHIMADVICPVLLDAVVKGDPRIAAVNVIWINP 362
              S     PCL F W ++ N +     + I+++ ICPVLL+ +++GDPRI++ ++IW+ P
Sbjct: 994  --SSHPAAPCLTFVWVEDRN-NEFDYTVKILSEKICPVLLETIIQGDPRISSASIIWVTP 1050

Query: 363  DTSTWIGNSSDCQIGELAVEVALEKKAVKRSGDAWRTVMDCCLPVFHLIDTRRSIPYAVK 542
            DT+TW+ N      GELA+++ LEK+ VK+SGDAWR V+D CLPV HLIDTRRSIPYA+K
Sbjct: 1051 DTNTWVRNPYKSSTGELALDIILEKEVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIK 1110

Query: 543  QVQELLGISCAFDQAVQRLSTSVTMVARGVLKEHLILLASSMTSTGTLIGFNSGGIKAMC 722
            Q QELLGISC FDQA+QR++ SV MVA+GVL+EHLILLASSMT  G ++GFN+GG KA+ 
Sbjct: 1111 QTQELLGISCTFDQAIQRVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALS 1170

Query: 723  RTLGVQVPFTEATLYTPRKCFERAAEKCHLDSLSSIVASCSWGKRVAVGTGARFDILWN- 899
            R L +QVPFT+ATL+TP+KCFERAAEKCH DSLSSIVASCSWGK VAVGTG++FDI+W+ 
Sbjct: 1171 RQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDA 1230

Query: 900  EKEATSQKGGIDVYDFLQLVR-NTHGEEEDNGCLGVDVDKFEMEDEYMEDGMSPKDS--- 1067
             K  +S+  G+DVY FL +V+  T  EEE + CLG D+D   +E+E ++  MSP  +   
Sbjct: 1231 NKIRSSEIEGMDVYSFLHMVKGRTDREEETDACLGEDIDDL-LEEENLDLEMSPPRNSGF 1289

Query: 1068 KAVFEDTELELDKSDGSENSAWNSGNDNQATDPT-----WISQSGNWDSKKSEPETSAAW 1232
            +AVFE+    L   + S ++ W+  N +Q    T     W+S     +  +S+    ++W
Sbjct: 1290 EAVFEENPEVL---NNSTSNGWDV-NSSQTESKTNGWSGWVSNKAETNEGRSDRAQESSW 1345

Query: 1233 GSAL 1244
            G  +
Sbjct: 1346 GKTV 1349