BLASTX nr result
ID: Rheum21_contig00021338
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00021338
(415 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 195 5e-48
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 195 5e-48
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 194 1e-47
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 194 1e-47
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 189 3e-46
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 189 3e-46
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 189 3e-46
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 189 3e-46
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 189 3e-46
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 187 2e-45
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 177 2e-42
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 116 3e-24
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 104 1e-20
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 104 1e-20
gb|AFM77886.1| replicase [Hosta virus X] 100 3e-19
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA... 100 3e-19
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 98 1e-18
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 97 2e-18
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 97 2e-18
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 97 2e-18
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 195 bits (496), Expect = 5e-48
Identities = 95/98 (96%), Positives = 97/98 (98%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 611 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 670
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 671 KLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 195 bits (496), Expect = 5e-48
Identities = 95/98 (96%), Positives = 97/98 (98%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1377
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 194 bits (493), Expect = 1e-47
Identities = 94/98 (95%), Positives = 97/98 (98%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDA
Sbjct: 1285 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDA 1344
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1345 KLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1382
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 194 bits (492), Expect = 1e-47
Identities = 94/98 (95%), Positives = 97/98 (98%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1268 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1327
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGD+L DLLSPRQAHLHQVTVRDLVKFGGSPFL
Sbjct: 1328 KLAYSLGDELHDLLSPRQAHLHQVTVRDLVKFGGSPFL 1365
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 189 bits (480), Expect = 3e-46
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 189 bits (480), Expect = 3e-46
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 189 bits (480), Expect = 3e-46
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 189 bits (480), Expect = 3e-46
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 189 bits (480), Expect = 3e-46
Identities = 93/98 (94%), Positives = 95/98 (96%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 187 bits (474), Expect = 2e-45
Identities = 92/98 (93%), Positives = 94/98 (95%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDA 1339
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
KLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1340 KLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 177 bits (448), Expect = 2e-42
Identities = 85/98 (86%), Positives = 90/98 (91%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
AY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDA
Sbjct: 1261 AYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDA 1320
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
K+AYSLGDDLQDLLSP QAHLHQVTVRDL KFGGSPFL
Sbjct: 1321 KMAYSLGDDLQDLLSPEQAHLHQVTVRDLTKFGGSPFL 1358
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 116 bits (291), Expect = 3e-24
Identities = 58/91 (63%), Positives = 67/91 (73%)
Frame = +3
Query: 24 GQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLG 203
G+WAEFCGYLITPKGLIKDPLKL AS LAK + K + N + NY+ D KLAY LG
Sbjct: 1361 GEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLG 1416
Query: 204 DDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
DDL +LL+P QA LHQVTVRD++K G S L
Sbjct: 1417 DDLLELLTPEQAQLHQVTVRDMIKLGASDIL 1447
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 104 bits (260), Expect = 1e-20
Identities = 55/97 (56%), Positives = 63/97 (64%)
Frame = +3
Query: 6 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 185
Y PQ G WAEFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345
Query: 186 LAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
LAY+L D L ++LSP QA LHQ TVR LVK +L
Sbjct: 1346 LAYALKDSLYEILSPEQAELHQETVRTLVKLTKGTYL 1382
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 104 bits (260), Expect = 1e-20
Identities = 55/97 (56%), Positives = 63/97 (64%)
Frame = +3
Query: 6 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 185
Y PQ G WAEFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345
Query: 186 LAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
LAY+L D L ++LSP QA LHQ TVR LVK +L
Sbjct: 1346 LAYALKDSLYEILSPEQAELHQETVRTLVKLTKGAYL 1382
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 100 bits (248), Expect = 3e-19
Identities = 53/91 (58%), Positives = 62/91 (68%)
Frame = +3
Query: 12 PQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLA 191
PQ +G WAEFCG LITP+G+IKDP+KLHAS LA K G I + +Y D KL+
Sbjct: 1363 PQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLS 1418
Query: 192 YSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 284
Y LGD LQ+LLS Q HQVTVR+LVKF G
Sbjct: 1419 YDLGDHLQELLSESQCRTHQVTVRELVKFAG 1449
>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
[Hosta virus X]
Length = 1507
Score = 100 bits (248), Expect = 3e-19
Identities = 53/91 (58%), Positives = 62/91 (68%)
Frame = +3
Query: 12 PQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLA 191
PQ +G WAEFCG LITP+G+IKDP+KLHAS LA K G I + +Y D KL+
Sbjct: 1397 PQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLS 1452
Query: 192 YSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 284
Y LGD LQ+LLS Q HQVTVR+LVKF G
Sbjct: 1453 YDLGDHLQELLSESQCRTHQVTVRELVKFAG 1483
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 98.2 bits (243), Expect = 1e-18
Identities = 54/94 (57%), Positives = 61/94 (64%)
Frame = +3
Query: 15 QERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 194
QE+G WAEFCGY ITPKG IKDP KLHASL L K KK +K NV+ +Y LD LAY
Sbjct: 1443 QEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEK--KKGNLK----NVLRSYELDLALAY 1496
Query: 195 SLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
D+L +LLS + LH TVR LVK GG L
Sbjct: 1497 QHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 97.4 bits (241), Expect = 2e-18
Identities = 53/98 (54%), Positives = 60/98 (61%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
A QE+G WAEFCGY ITPKG IKDP KLHASL L K K + NV+ +Y LD
Sbjct: 1439 AIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEKK------KGNLRNVLRSYELDL 1492
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
LAY D+L +LLS + LH TVR LVK GG L
Sbjct: 1493 ALAYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 97.4 bits (241), Expect = 2e-18
Identities = 54/98 (55%), Positives = 62/98 (63%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
A QE+G WAEFCGY ITPKG IKDP KLHASL L +KK G + NV+ +Y LD
Sbjct: 1439 AIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDL 1492
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
LAY D+L +LLS + LH TVR LVK GG L
Sbjct: 1493 ALAYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 97.4 bits (241), Expect = 2e-18
Identities = 54/98 (55%), Positives = 62/98 (63%)
Frame = +3
Query: 3 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 182
A QE+G WAEFCGY ITPKG IKDP KLHASL L +KK G + NV+ +Y LD
Sbjct: 1439 AIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDL 1492
Query: 183 KLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 296
LAY D+L +LLS + LH TVR LVK GG L
Sbjct: 1493 ALAYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530