BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00021315
         (525 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    95   8e-18
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    90   4e-16
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A...    87   2e-15
gb|ABE80156.1| Ribonuclease H [Medicago truncatula]                    87   2e-15
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624...    87   3e-15
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]                87   3e-15
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...    86   4e-15
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A...    86   4e-15
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A...    81   2e-13
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob...    80   2e-13
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    80   2e-13
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A...    79   6e-13
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A...    77   2e-12
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    77   3e-12
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...    77   3e-12
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob...    75   7e-12
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    75   9e-12
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas...    74   2e-11
ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein A...    73   3e-11
ref|XP_004305757.1| PREDICTED: putative ribonuclease H protein A...    72   8e-11

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
 Frame = -1

Query: 522  LNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLD--PIWSKSWRVPT 349
            L  +A+  +I+ E+A+D I+W G+ SG F+  S +++    +   +D  P WS  W++PT
Sbjct: 993  LKLIAAHELIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELANMDAHPKWSAVWKIPT 1052

Query: 348  QQ*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSI 172
             Q  R F +LA  D L+ N+NR  R L   P C  C  + E   H+LR C   R++W  +
Sbjct: 1053 PQRVRFFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRKL 1112

Query: 171  SGNSLLATFFTADC-LRDWIFSNIK----NLDSYSTTFSLMLWHSWKCRNELVFNGNDS 10
                +L      +  L  WI  N+         +   F++  W  W+ RN+  FN N S
Sbjct: 1113 ---GMLGEHNREEINLGSWITKNLSADTMMGSEWLRVFAVSCWWLWRWRNDRCFNRNPS 1168


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
 Frame = -1

Query: 525 ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQ-APGLDPIWSKSWRVPT 349
           I+NQ+ ++      D  D I WGG  +  F+ +S  +L      A G D  W   W    
Sbjct: 415 IVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGD--WKTLWNWKG 472

Query: 348 QQ*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRCSIP-ETGLHLLRDCTTVRLIWLSI 172
               + F +LAAH  +L N  R++  +  SP CP C+   ET +H+LRDC     +WL +
Sbjct: 473 PHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRL 532

Query: 171 SGNSLLATFFTADCLRDWIFSNIK------NLDSYSTTFSLMLWHSWKCRNELVF 25
             ++ +  FF+ DC R+W+F+N+       N  ++ TTF    W+ W  RN+ +F
Sbjct: 533 IPHNYITNFFSFDC-REWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIF 586


>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 569

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
 Frame = -1

Query: 525 ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
           I+ Q+A++     +   D +FW  + SG F+  S    L        D +W   W     
Sbjct: 123 IILQIAALHPPSPDKGTDSLFWAHSKSGRFTTHSAYLALSNDTPMHDDRLWRMVWNWKGP 182

Query: 345 Q*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSIS 169
           Q  R F +   HD L   A  ARRH+  S +C RC ++ E  +H+LRDC  V+L WL I 
Sbjct: 183 QSVRIFLWQVFHDRLKTKAELARRHIPVSTSCDRCGAVNEDAMHVLRDCALVKLFWLLIL 242

Query: 168 GNSLLATFFTADCLRDWIFSNI------KNLDSYSTTFSLMLWHSWKCRNELVFN 22
             +    FF +  L++W+ +N+       ++ +++  F + LW  W  RN+  FN
Sbjct: 243 PANKRQQFFNSR-LQEWLRTNVGIVGRLGSVSNWAIFFGIALWRLWFWRNQFFFN 296


>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 7/178 (3%)
 Frame = -1

Query: 519 NQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLD----PIWSKSWRVP 352
           N + +  I   ++  D + W  N +G +S KSG H L   + P  D    P WS  W + 
Sbjct: 68  NHINNFHIHFNDNIEDALIWSQNKNGTYSTKSGFHWLLTFRVPATDIIPHPSWSWIWNLQ 127

Query: 351 TQQ*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIW-- 181
             +  +   +LA  +V+   +   RR++APSP C RC    ET LH +RDC   R IW  
Sbjct: 128 VPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCHFSRSIWQK 187

Query: 180 LSISGNSLLATFFTADCLRDWIFSNIKNLDSYSTTFSLMLWHSWKCRNELVFNGNDSS 7
           +  +GN     FFTA    DW    I    S    F   LW +W+ RN +  N    S
Sbjct: 188 IGFTGND----FFTATSAHDWF--KIGMSSSLPDIFFGGLWWAWRHRNLMCLNNETMS 239


>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
          Length = 1635

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 60/175 (34%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
 Frame = -1

Query: 525  ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
            IL ++ASV         D  FWG + +G FS KS   LL      G    W   W     
Sbjct: 1437 ILLKIASVHPPTASHGADSFFWGASSNGNFSVKSAYELLDDPIGNGDHSFWCLVWSWKGP 1496

Query: 345  Q*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRCSIP-ETGLHLLRDCTTVRLIWLSIS 169
               R F +L  H  L       RRHL  S  C RC  P E  LH LRDC T R +W  + 
Sbjct: 1497 HSIRVFLWLLLHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTARRVWSHLL 1556

Query: 168  GNSLLATFFTADCLRDWIFSNI---KNLDS---YSTTFSLMLWHSWKCRNELVFN 22
             N+   +FF    L DW+  N+   KN  S   +   F + +W  W  RN  +FN
Sbjct: 1557 PNNYPHSFFLCP-LSDWLQMNLMRKKNNTSQEYWRVCFGVAVWRLWFWRNNFLFN 1610


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 9/161 (5%)
 Frame = -1

Query: 480 AVDKIFWGGNVSGCFSAKSGLHLLHALQAPGL---DPIWSKSWRVPTQQ*ARHFPFLAAH 310
           A D  +WG + SG F+  S    L  L +P       IW  +W+    Q  R F F   H
Sbjct: 287 AQDMPYWGESASGQFTVASVYDYLRQLSSPAKARPSGIWQGAWKWQGSQRVRTFLFQCLH 346

Query: 309 DVLLCNANRARRHLAPSPNCPRCSI-PETGLHLLRDCTTVRLIWLSISGNSLLATFFTAD 133
             LL N  R  R L     CP+C +  ET  H+LRDC     +W+ I        FFT  
Sbjct: 347 GRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKIIPQHEQNDFFTFP 406

Query: 132 CLRDWIFSNIKNL-----DSYSTTFSLMLWHSWKCRNELVF 25
            LR+W+ SN++       + +S  F L  W  WK RN +VF
Sbjct: 407 -LREWLVSNLQKQQLILGNPWSVVFGLACWCLWKWRNGVVF 446


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 676

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSG--LHLLHALQAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVL 301
           DK+ W G  +G F+  S   +  +  +    +   + + WRV   + AR F +L  + V+
Sbjct: 309 DKMSWVGTENGRFTVSSAYLIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQVV 368

Query: 300 LCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLR 124
           L NA R RRH+A S  CP C    E+ +H+LRDC  +  IW+ +        FF    L 
Sbjct: 369 LTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLL- 427

Query: 123 DWIFSNIKNLD-----SYSTTFSLMLWHSWKCRNELVFNGNDS 10
           +W++ N+K        S+ T F+L +W  WK R   VF G DS
Sbjct: 428 EWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVF-GEDS 469


>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 684

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
 Frame = -1

Query: 525 ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
           +L Q+ASV        VDK+FW     G F+ +S    L  L +      W  +W     
Sbjct: 331 VLLQIASVMPPNHLLGVDKLFWRYEPRGNFTVRSAYEALCQLDSNDTGTAWKLAWTWKGP 390

Query: 345 Q*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRCSIP-ETGLHLLRDCTTVRLIWLSIS 169
           Q  R F + A H  L      +RRH+  S  C RC  P E  +H+LRDC  +  +WL + 
Sbjct: 391 QAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIEDVIHVLRDCQCIMRVWLRLV 450

Query: 168 GNSLLATFFTADCLRDWIFSNIKNL------DSYSTTFSLMLWHSWKCRNELVFNG--ND 13
                 +FF +  LRDWI +N++N        ++   F + +W  W  RN  + +G   D
Sbjct: 451 PARNHLSFFQS-TLRDWITANLQNKWKIASPSTWECIFGVAIWRLWFWRNHFMVDGKLTD 509

Query: 12  SSS 4
           SS+
Sbjct: 510 SST 512


>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 411

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVLLC 295
           DK+ W    +G FS KS  +      A   +P+W+  W++      + F +   H  +L 
Sbjct: 44  DKLIWNATANGKFSVKSAYNSFFD-SAGVSNPLWTHLWKLNCPPKLKTFMWYVLHQKILT 102

Query: 294 NANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLRDW 118
           N  R RR  +   +CP C +  ET LHLLRDC   + IW SI     +   F+ D    W
Sbjct: 103 NVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILSPGSITNSFSLD-WNGW 161

Query: 117 IFSN------IKNLDSYSTTFSLMLWHSWKCRNELVFN 22
           I +       IKN   +   F  + W  WK RN+++F+
Sbjct: 162 ICAQFHCHVVIKNNIQWCNLFVFVCWFIWKWRNKVIFD 199


>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 1011

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
 Frame = -1

Query: 525  ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
            ++NQ+  +       ++D  +W  +  G F+  S    L +L A       +K WR+   
Sbjct: 660  VVNQILCIIPPTLSASLDMPYWALSPYGYFTISSTYKHLGSL-ADSTREENNKMWRLVWD 718

Query: 345  Q*ARH----FPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIW 181
                H    F F   H  +L NA R RR ++   +CP C  + ET LH+LRDC  +  +W
Sbjct: 719  LRGPHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLW 778

Query: 180  LSISGNSLLATFFTADCLRDWIFS--NIKNLDSYSTTFSLML----WHSWKCRNELVFNG 19
              I   S +  FF    L DW+ S  N+KNL  +   ++++L    W++WK RN  +F G
Sbjct: 779  RRILPQSGINQFFQIP-LIDWLSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEG 837

Query: 18   NDSS 7
             + S
Sbjct: 838  RELS 841


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
 Frame = -1

Query: 474  DKIFWGGNVSGCFSAKSGLHLLHAL--QAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVL 301
            D+I W G   G F+ +S   LL       P +   +++ W++ T +  R F +L + +V+
Sbjct: 868  DEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVI 927

Query: 300  LCNANRARRHLAPSPNCPRCS-IPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLR 124
            + N  R RRHL+ +  C  C+   ET LH+LRDC  +  IW  +        FF+   L 
Sbjct: 928  MTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLL- 986

Query: 123  DWIFSNIKNLDS-YSTTFSLMLWHSWKCR 40
            +W+F+N+  +   + T F + +W +WK R
Sbjct: 987  EWLFTNMDPVKGIWPTLFGMGIWWAWKWR 1015


>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 719

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVLLC 295
           DK+ W    +G FS KS  +      A   +P+W+  W++      + F +   H  +L 
Sbjct: 531 DKLIWNATANGKFSVKSTYNSFFD-SAGVSNPLWTHLWKLNCPPKLKTFMWSVLHQKILT 589

Query: 294 NANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLRDW 118
           N  R RR  +   +CP C +  ET LHLLRDC   + IW SI     +   F+ D    W
Sbjct: 590 NVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILRPGSITNSFSLD-WNGW 648

Query: 117 IFSN------IKNLDSYSTTFSLMLWHSWKCRNELVFN 22
           I +       IKN   +   F  + W  WK RN+++F+
Sbjct: 649 ISAQFHCHVVIKNNIQWCNLFVFVCWFIWKWRNKVIFD 686


>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 491

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
 Frame = -1

Query: 525 ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
           I+ ++A+V+        DK FW  +  G FS KS    +   +       W+ +W+    
Sbjct: 226 IILRIAAVQPPMEGKGDDKFFWANSQRGDFSVKSAYMAITKNEIGIEHSRWNIAWKWKGP 285

Query: 345 Q*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRCSI-PETGLHLLRDCTTVRLIWLSIS 169
              + F +LA HD L   A   RRH+     C  C +  ET LH+LRDC   + +W  + 
Sbjct: 286 PRVQTFIWLALHDRLKTKAEIGRRHIHIDWTCDHCGVASETTLHVLRDCFMAKRLWNQLL 345

Query: 168 GNSLLATFFTADCLRDWIFSNIK------NLDSYSTTFSLMLWHSWKCRNELVFN 22
            +     FF+++ L DW+  N++      N   +S  F + +W  W  RN+  FN
Sbjct: 346 PSEWRQVFFSSNLL-DWLTLNLRSNQCMENGLEWSCMFGVAIWRLWFWRNQYQFN 399


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSGLHLLHALQAP--GLDPIWSKSWRVPTQQ*ARHFPFLAAHDVL 301
           D++ WG ++ G F+ KS    L     P   L  ++ + W+V   +  + F +L  H V+
Sbjct: 432 DRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWKVIAPERVKIFLWLGVHQVI 491

Query: 300 LCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLR 124
           + N  R RRHL+ +  C  C    ET +H+LRDC  +  IW  I       TFFT   L 
Sbjct: 492 MTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWTRIIPRRKRGTFFT-QTLL 550

Query: 123 DWIFSNIKNLDSY-STTFSLMLW-HSWKCRNELVFNG 19
           +W++ N+ +        +S + W   W+C N    NG
Sbjct: 551 EWVYDNLGDSGKVDGCPWSCVRWGWKWRCGNVFGVNG 587


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
 Frame = -1

Query: 474  DKIFWGGNVSGCFSAKSGLHLL--HALQAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVL 301
            D++ W G  +G F+ +S   LL   A + P +     + W++   +  R F +L +H V+
Sbjct: 609  DELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVI 668

Query: 300  LCNANRARRHLAPSPNCPRCS-IPETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCLR 124
            + N  R RRHL+    C  C+   E+ LH+LRDC  +  IW  +        FF+     
Sbjct: 669  MTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQ---F 725

Query: 123  DWIFSNIKNL-DSYSTTFSLMLWHSWKCRNELVF 25
            +W+F+N+      + T FS+ +W +WK R   VF
Sbjct: 726  EWLFTNLDPAKGDWPTLFSMGIWWAWKWRCGDVF 759


>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 874

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
 Frame = -1

Query: 525  ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDP---IWSKSWRV 355
            ++NQ+  +       ++D  +W  + SG F+  S    L +L     +    +W   W  
Sbjct: 532  VVNQILYIIPPTLSASLDMPYWALSPSGYFTISSTYEHLGSLADSTREENNKMWHLVWDW 591

Query: 354  PTQQ*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWL 178
                    F F   H  +L NA R RR ++   +CP C  + ET LH+LRDC     +W 
Sbjct: 592  KGPHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWR 651

Query: 177  SISGNSLLATFFTADCLRDWIFS--NIKNLDSYSTTFSLML----WHSWKCRNELVFNGN 16
             I   S +  FF    L DW+ S  N+KNL  +   ++++     W++WK  N  +F G 
Sbjct: 652  RILPESGINQFFQIP-LIDWLSSNLNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFEGR 710

Query: 15   DSS 7
            + S
Sbjct: 711  ELS 713


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 336 RHFPFLAAHDVLLCNANRARRHLAPSPNCPRCSI-PETGLHLLRDCTTVRLIWLSISGNS 160
           R F +L    V++ N  R RRHL+ +  C  C    ET LH+LRDC  +  IW  +    
Sbjct: 7   RVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVPRD 66

Query: 159 LLATFFTADCLRDWIFSNIKNLDSYSTTFSLMLWHSWKCRNELVFNGN 16
            +  FFTA  L +WI+ N++   S+ T F + +W  WK R   +F GN
Sbjct: 67  QIRQFFTASLL-EWIYKNLRERGSWPTVFVMAVWWGWKWRCGNIFGGN 113


>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
           Polynucleotidyl transferase, Ribonuclease H fold-like
           protein [Theobroma cacao]
          Length = 616

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPI---WSKSWRVPTQQ*ARHFPFLAAHDV 304
           D  +W  + SG  +  S   +L       +      W+ +W+    Q  R F     H  
Sbjct: 304 DTPYWASSASGVCTVASTYEVLREDYPNYIGQQSRKWAIAWKWDGPQRIRTFLMQCLHGK 363

Query: 303 LLCNANRARRHLAPSPNCPRCSIP-ETGLHLLRDCTTVRLIWLSISGNSLLATFFTADCL 127
           LL N    RR+++ S  C  CS+  E+ LHLLRDC   + +WL +        FF    L
Sbjct: 364 LLTNLECRRRNMSSSATCALCSVSDESVLHLLRDCPHSKEVWLKLGSRMGYGNFFDL-LL 422

Query: 126 RDWIFSNIKNLD------SYSTTFSLMLWHSWKCRNELVFNG 19
            DW+ +N+KN +       +   F    W+ WK RN  VF G
Sbjct: 423 SDWLLTNLKNYNVCVDGIPWVILFGFTCWYIWKWRNVKVFEG 464


>ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 470

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
 Frame = -1

Query: 474 DKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQQ*ARHFPFLAAHDVLLC 295
           D+  W GN  G +   SG + ++  Q      IW+K W++   +  + F +   H+ LL 
Sbjct: 105 DRRLWTGNKLGEYFVASGYNQVNGFQNLSQSHIWNKIWKIKAPERIKVFIWQVTHERLLT 164

Query: 294 NANRARRHLAPSPNCPRCSIPETG-LHLLRDCTTVRLIWLSISGNSLLATFFTADCLRDW 118
           N+  A R    + +C  C I E   LH+LRDC    L+WL +   S +A FF  D L +W
Sbjct: 165 NSCIAHRGNGQA-SCHHCVILEENILHVLRDCPLANLVWLHLLDQSNVANFFYPD-LMEW 222

Query: 117 IFSNIK------NLDSYSTTFSLMLWHSWKCRNELVFNGN 16
           I  N+       + D + + ++   +  W  RN+ V N +
Sbjct: 223 IDMNLSRDLNATSKDDWQSVWAQGCYFLWYWRNQQVHNSS 262


>ref|XP_004305757.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 395

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
 Frame = -1

Query: 525 ILNQLASVRIIEREDAVDKIFWGGNVSGCFSAKSGLHLLHALQAPGLDPIWSKSWRVPTQ 346
           I+N + +V     E   D   W    +G FS KS    +     P ++P W   W++   
Sbjct: 72  IVNLIVNVPTGFSESGDDTRIWCSTSNGQFSVKSAYSSIFYSSDP-MNPQWKAMWKLDLP 130

Query: 345 Q*ARHFPFLAAHDVLLCNANRARRHLAPSPNCPRC-SIPETGLHLLRDCTTVRLIWLSIS 169
              + F +   H  LL N  RA R    SP+CP C S  ET LHLLRD    ++IW + S
Sbjct: 131 PKLKTFLWTILHKKLLTNVQRATRGFTSSPSCPICHSADETLLHLLRDYPRAKIIWRAFS 190

Query: 168 ----------GNSLLATFFTA---DCLRDWIFSNIKNLDSYSTTFSLMLWHSWKCRNELV 28
                      + +L T F     D   +W  S +K+ ++Y  ++++   H+WK   E  
Sbjct: 191 KPWRNKQVFEPSFVLPTSFKKIIWDYALEWRKSKLKSNNNYMFSYTM---HAWKKPPENF 247

Query: 27  FNGN 16
           FN N
Sbjct: 248 FNLN 251