BLASTX nr result
ID: Rheum21_contig00021065
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00021065
(435 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI36146.3| unnamed protein product [Vitis vinifera] 124 2e-26
emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera] 98 6e-24
prf||1211235P rpoC-like ORF 236 97 8e-24
pir||A05030 rpoC protein homolog - common tobacco chloroplast 97 8e-24
ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subun... 98 3e-23
gb|AGW04509.1| RNA polymerase beta' subunit [Eustegia minuta] 91 2e-16
gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum] 91 2e-16
ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum in... 91 2e-16
gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidops... 91 2e-16
gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acu... 91 2e-16
ref|YP_008964025.1| RNA polymerase beta' subunit 1 [Ajuga reptan... 90 3e-16
ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) ... 90 3e-16
gb|AEP25224.1| RNA polymerase C2 [Persicaria virginiana] 90 3e-16
ref|YP_004563995.1| RNA polymerase beta' chain [Olea woodiana su... 90 3e-16
ref|YP_004563772.1| RNA polymerase beta' chain [Olea europaea su... 90 3e-16
ref|YP_004376412.1| RNA polymerase beta' chain [Olea europaea su... 90 3e-16
gb|ADD72080.1| RNA polymerase beta subunit [Olea europaea] 90 3e-16
ref|YP_009002249.1| RNA polymerase beta' subunit (chloroplast) [... 90 4e-16
ref|YP_007353906.1| RNA polymerase beta' subunit (chloroplast) [... 90 4e-16
ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis] gi|... 90 4e-16
>emb|CBI36146.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 124 bits (310), Expect = 2e-26
Identities = 77/137 (56%), Positives = 83/137 (60%)
Frame = -1
Query: 411 VKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT*LYLAK*LYDTDGIRPARVQLG 232
VKKEI IYIRTTVGHIS YREI+EAIQGF RA R + G
Sbjct: 125 VKKEIPCIYIRTTVGHISLYREIEEAIQGFCRA----------------------RSRKG 162
Query: 231 S*FVNLYAN*DLEKEVFHSLT*THSLSNPTQRNMEVLMAEGANLVFHNKVIDGIAMKRLI 52
S + T ++ LSN TQ+NM VLM E NLVFHNKVIDG AMKRLI
Sbjct: 163 S----------------FTTTDSNPLSNLTQQNMGVLMTERVNLVFHNKVIDGTAMKRLI 206
Query: 51 SRLIDHFGMAYTSHILD 1
SRLIDHFGMAYTSHILD
Sbjct: 207 SRLIDHFGMAYTSHILD 223
>emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]
Length = 203
Score = 97.8 bits (242), Expect(2) = 6e-24
Identities = 49/57 (85%), Positives = 51/57 (89%)
Frame = -1
Query: 171 T*THSLSNPTQRNMEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 1
T ++ LSNPTQRNM VLM E ANLVFHNKVIDG AMKRLISRLIDHFGMAYTSHILD
Sbjct: 94 TDSNPLSNPTQRNMGVLMTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILD 150
Score = 38.5 bits (88), Expect(2) = 6e-24
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = -3
Query: 250 RSSSTRIIVREFIRELRSRKGSFPLTNLNP 161
R + RIIV EF+RE RSRKGSF T+ NP
Sbjct: 69 RVIAERIIVLEFLREARSRKGSFTTTDSNP 98
>prf||1211235P rpoC-like ORF 236
Length = 236
Score = 96.7 bits (239), Expect(2) = 8e-24
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = -1
Query: 177 SLT*THSLSNPTQRNMEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 1
++T ++ LSN TQRNMEVLMAE ANLVFHNK I+G AMKRLISRLIDHFGMAYTSHILD
Sbjct: 33 TITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILD 91
Score = 39.3 bits (90), Expect(2) = 8e-24
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -3
Query: 265 RWNSARSSSTRIIVREFIRELRSRKGSFPLTNLNP 161
R S S S R IV EFIRE RS KGSF +T+ NP
Sbjct: 5 RGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNP 39
>pir||A05030 rpoC protein homolog - common tobacco chloroplast
Length = 236
Score = 96.7 bits (239), Expect(2) = 8e-24
Identities = 48/59 (81%), Positives = 53/59 (89%)
Frame = -1
Query: 177 SLT*THSLSNPTQRNMEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 1
++T ++ LSN TQRNMEVLMAE ANLVFHNK I+G AMKRLISRLIDHFGMAYTSHILD
Sbjct: 33 TITDSNPLSNSTQRNMEVLMAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILD 91
Score = 39.3 bits (90), Expect(2) = 8e-24
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -3
Query: 265 RWNSARSSSTRIIVREFIRELRSRKGSFPLTNLNP 161
R S S S R IV EFIRE RS KGSF +T+ NP
Sbjct: 5 RGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNP 39
>ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subunit beta''-like [Cucumis
sativus]
Length = 326
Score = 97.8 bits (242), Expect(2) = 3e-23
Identities = 48/52 (92%), Positives = 50/52 (96%)
Frame = -1
Query: 156 LSNPTQRNMEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 1
LSNPTQRNMEVLMAE A+LVFHNKVIDG A+KRLISRLIDHFGMAYTSHILD
Sbjct: 35 LSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILD 86
Score = 36.2 bits (82), Expect(2) = 3e-23
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -3
Query: 259 NSARSSSTRIIVREFIRELRSRKGSFPLTNLN 164
N S STR I EF+RE RSRKGSF + N N
Sbjct: 2 NFVLSGSTRTIGPEFLRESRSRKGSFLIINSN 33
>gb|AGW04509.1| RNA polymerase beta' subunit [Eustegia minuta]
Length = 685
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHISFYREI EA+QGFS ACSYGT
Sbjct: 640 GHYLIVRSIKKEILFIYIRTTVGHISFYREIDEALQGFSHACSYGT 685
>gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum]
Length = 687
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EAIQGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAIQGFSQACSYGT 687
>ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum indicum]
gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit
(chloroplast) [Sesamum indicum]
Length = 691
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EAIQGFS+ACSYGT
Sbjct: 646 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAIQGFSQACSYGT 691
>gb|ADD31173.1| RNA polymerase beta' subunit protein [Berberidopsis corallina]
Length = 682
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRSVKKEILFIYIRTTVGHIS YREI+EAIQGF RACSYGT
Sbjct: 637 GHYLIVRSVKKEILFIYIRTTVGHISLYREIEEAIQGFCRACSYGT 682
>gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acuminata]
Length = 687
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EAIQGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAIQGFSQACSYGT 687
>ref|YP_008964025.1| RNA polymerase beta' subunit 1 [Ajuga reptans]
gi|558697184|gb|AHA84939.1| RNA polymerase beta' subunit
1 [Ajuga reptans]
Length = 680
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILF+YIRTTVGHIS YREI+EAIQGFS+ACSYGT
Sbjct: 635 GHYLIVRSIKKEILFLYIRTTVGHISLYREIEEAIQGFSKACSYGT 680
>ref|YP_003359350.2| RNA polymerase beta I subunit (chloroplast) [Olea europaea]
gi|363413082|gb|ADA69917.2| RNA polymerase beta I
subunit (chloroplast) [Olea europaea]
Length = 685
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 637 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAVQGFSQACSYGT 682
>gb|AEP25224.1| RNA polymerase C2 [Persicaria virginiana]
Length = 1131
Score = 90.1 bits (222), Expect = 3e-16
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = -1
Query: 132 MEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 1
MEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD
Sbjct: 1 MEVLMAEGANLVFHNKVIDGIAMKRLISRLIDHFGMAYTSHILD 44
>ref|YP_004563995.1| RNA polymerase beta' chain [Olea woodiana subsp. woodiana]
gi|334084650|emb|CBS29341.1| RNA polymerase beta' chain
[Olea woodiana subsp. woodiana]
Length = 690
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAVQGFSQACSYGT 687
>ref|YP_004563772.1| RNA polymerase beta' chain [Olea europaea subsp. cuspidata]
gi|334084392|emb|CBR23820.1| RNA polymerase beta' chain
[Olea europaea subsp. cuspidata]
gi|334084941|emb|CBJ04289.1| RNA polymerase beta' chain
[Olea europaea subsp. cuspidata]
gi|334085027|emb|CBR23729.1| RNA polymerase beta' chain
[Olea europaea subsp. cuspidata]
Length = 690
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAVQGFSQACSYGT 687
>ref|YP_004376412.1| RNA polymerase beta' chain [Olea europaea subsp. europaea]
gi|334701879|ref|YP_004564488.1| RNA polymerase beta'
chain [Olea europaea subsp. maroccana]
gi|328795424|emb|CBR30305.1| RNA polymerase beta' chain
[Olea europaea subsp. europaea]
gi|334084478|emb|CBR24611.1| RNA polymerase beta' chain
[Olea europaea subsp. europaea]
gi|334084564|emb|CBR30397.1| RNA polymerase beta' chain
[Olea europaea subsp. europaea]
gi|334084855|emb|CBS29228.1| RNA polymerase beta' chain
[Olea europaea subsp. maroccana]
gi|510934395|emb|CCQ09093.1| RNA polymerase beta' chain
(chloroplast) [Olea europaea subsp. europaea]
Length = 690
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAVQGFSQACSYGT 687
>gb|ADD72080.1| RNA polymerase beta subunit [Olea europaea]
Length = 683
Score = 90.1 bits (222), Expect = 3e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 635 GHYLIVRSIKKEILFIYIRTTVGHISLYREIEEAVQGFSQACSYGT 680
>ref|YP_009002249.1| RNA polymerase beta' subunit (chloroplast) [Pinguicula ehlersiae]
gi|575882131|emb|CDL78805.1| RNA polymerase beta'
subunit (chloroplast) [Pinguicula ehlersiae]
Length = 687
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRS+KKEILFIYIRTTVGHIS YREI+EA+QGFS+ACSYGT
Sbjct: 642 GHYLIVRSIKKEILFIYIRTTVGHISVYREIEEAVQGFSQACSYGT 687
>ref|YP_007353906.1| RNA polymerase beta' subunit (chloroplast) [Tectona grandis]
gi|438687595|emb|CCP47121.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
gi|438688279|emb|CCP47210.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
gi|438688403|emb|CCP47299.1| RNA polymerase beta'
subunit (chloroplast) [Tectona grandis]
Length = 684
Score = 89.7 bits (221), Expect = 4e-16
Identities = 40/46 (86%), Positives = 45/46 (97%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLI+RS+KKEILF+YIRTTVGHIS YREI+EA+QGFSRACSYGT
Sbjct: 639 GHYLILRSIKKEILFLYIRTTVGHISLYREIEEAVQGFSRACSYGT 684
>ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis]
gi|122166044|sp|Q09G55.1|RPOC1_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|114054375|gb|ABI49769.1| RNA polymerase beta
[Platanus occidentalis]
Length = 682
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = -1
Query: 435 GHYLIVRSVKKEILFIYIRTTVGHISFYREIQEAIQGFSRACSYGT 298
GHYLIVRSVKKEIL IYIRTTVGHISFYREI+EAIQGF RACSYGT
Sbjct: 637 GHYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRACSYGT 682