BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00020477
         (2419 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]             191   2e-45
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             187   1e-44
ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803...   187   2e-44
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   186   5e-44
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   185   9e-44
gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]       185   9e-44
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   185   9e-44
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         183   3e-43
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       179   4e-42
gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao]   179   5e-42
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   179   5e-42
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   179   5e-42
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        179   7e-42
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   178   9e-42
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  178   1e-41
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  178   1e-41
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni...   177   2e-41
ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659...   177   2e-41
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763...   176   3e-41
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]        176   4e-41

>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 572

 Score =  191 bits (484), Expect = 2e-45
 Identities = 106/277 (38%), Positives = 158/277 (57%), Gaps = 10/277 (3%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
            C+KCQG GH+   CP  + +L     G    +D              DEE    +E I S
Sbjct: 295  CFKCQGQGHIASQCPTKRTMLMEENEGIVEEEDGD-----------YDEE---FEEEIPS 340

Query: 635  PLDSPGHVPLSLVTRRVLTAK---EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNII 465
                 G +   L+ RR+L ++   E T   QRENLFHT+C VQG   S+IIDGGSC N+ 
Sbjct: 341  -----GDL---LMVRRMLGSQIKEEDT--GQRENLFHTRCFVQGKVCSLIIDGGSCTNVA 390

Query: 464  NEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDAT 285
            + +++   K +T PHP+PY LQW++E  +  +V +Q  I F IG Y+D VLCDV+PM+A+
Sbjct: 391  STRLVSKLKLETKPHPKPYKLQWLNESVEM-LVNKQVEICFKIGKYEDVVLCDVVPMEAS 449

Query: 284  HLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQD-------HIERNRIK 126
            HLLLGRPWQFD++A HDG+ N Y FM++ +K+ L+P++P E+ +D       + +  + K
Sbjct: 450  HLLLGRPWQFDRKANHDGYSNKYSFMYHDQKINLVPLNPSEVREDQRKMREKYDQERKEK 509

Query: 125  ALEQAKAKASREPPQKSAPKSGIQGSCENRLLLARSR 15
              E+ K K   +  +K+  K   +   +  L+  + R
Sbjct: 510  EKEKEKEKEKEKVKEKNEKKKNDKREKKQSLIAKKKR 546



 Score =  100 bits (249), Expect = 3e-18
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTD--- 1343
            K+P F G+ DP  +L+W+  +E + N + Y   E+V  +++ F   A  WW     D   
Sbjct: 75   KVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRR 134

Query: 1342 -CERPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIH 1166
              ERP+ +W  + RIM +++VP  +  E+  K++   QG++S  +++ E+E L  +A + 
Sbjct: 135  YAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVE 194

Query: 1165 HTDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTNT 995
              DE   + FL GL+  I + + + +  ++ +  H A ++    Q+ KR S +R N+
Sbjct: 195  EDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKV---EQQLKRKSQARRNS 248


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  187 bits (476), Expect = 1e-44
 Identities = 100/272 (36%), Positives = 156/272 (57%), Gaps = 3/272 (1%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
            C+KCQG GH+   CP  + +L                     +    +EE    D+    
Sbjct: 295  CFKCQGQGHIASQCPTKRTMLMEE------------------NEEIVEEEDGDYDKEFGE 336

Query: 635  PLDSPGHVPLSLVTRRVLTAK---EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNII 465
             + S       L+ RR+L ++   E T   QRENLFH +C VQG   S+IIDGGSC N+ 
Sbjct: 337  EIPSGD----LLMVRRMLGSQIKEEDT--SQRENLFHIRCFVQGKVCSLIIDGGSCTNVA 390

Query: 464  NEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDAT 285
            + +++   K +T PHP+PY LQW++E  +  +V +Q  I F IG Y+D VLCDV+PM+A+
Sbjct: 391  STRLVSRLKLETKPHPKPYKLQWLNESVEM-LVNKQVEICFKIGKYEDVVLCDVVPMEAS 449

Query: 284  HLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQAKA 105
            HLLLGRPWQFD++A HDG+ N Y FM++ +K+ L+P++P E+ +D  +R   +  +Q + 
Sbjct: 450  HLLLGRPWQFDRKANHDGYSNKYSFMYHDQKINLVPLNPSEVRED--QRKMSEKYDQERK 507

Query: 104  KASREPPQKSAPKSGIQGSCENRLLLARSRDI 9
            +  +E  +    K+  +   + + L+A+ RD+
Sbjct: 508  EKEKEKEKNEKKKNDKRE--KKQSLIAKIRDV 537



 Score =  102 bits (253), Expect = 1e-18
 Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTD--- 1343
            K+P F G+ DP  +L+W+  +E + N + Y   E+V  +++ F   A  WW     D   
Sbjct: 75   KVPTFVGKSDPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRR 134

Query: 1342 -CERPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIH 1166
              ERP+ +W  + RIM +++VP  +  E+  K+Q   QG++S  +++ E+E L  +A + 
Sbjct: 135  YAERPIDTWEEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVE 194

Query: 1165 HTDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTNT 995
              DE   + FL GL+  I + + + +  ++ +  H A ++    Q+ KR S +R N+
Sbjct: 195  EDDEATMARFLHGLNHDISDIVELHHYVEMDELVHQAIKV---EQQLKRKSQARRNS 248


>ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803456 [Glycine max]
          Length = 732

 Score =  187 bits (474), Expect = 2e-44
 Identities = 96/224 (42%), Positives = 137/224 (61%), Gaps = 2/224 (0%)
 Frame = -3

Query: 815 CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
           C+KC G GH+  +CP  K ++       E   +++ ++P   +  A +EE  + D +I  
Sbjct: 172 CFKCLGRGHIASECPTKKVMILK--DDGEITSENSPSEPSSEEERALEEEIPEGDLFI-- 227

Query: 635 PLDSPGHVPLSLVTRRVL--TAKEGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNIIN 462
                         RR+L   AK+     QREN+FHT C +QG   S+IIDGGSC N+++
Sbjct: 228 -------------VRRILGGIAKKSEE-SQRENIFHTTCLIQGRVCSLIIDGGSCTNVVS 273

Query: 461 EKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATH 282
            ++++    +T PHP+PY LQW+SE  +  V K Q  I FSIG YKD  LCDV+PM+A+H
Sbjct: 274 ARLVKKMNLETKPHPRPYKLQWLSEEGELRVDK-QVEIQFSIGKYKDKTLCDVVPMEASH 332

Query: 281 LLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQD 150
           +LLGRPWQFD++A HDG  N Y+F H+ RKVTL+ +S +E  QD
Sbjct: 333 VLLGRPWQFDRKAHHDGHKNKYIFYHDNRKVTLVSLSLKEEFQD 376


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  186 bits (471), Expect = 5e-44
 Identities = 99/244 (40%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSA------LSGYESFDDDTRADPPVFDSYAQDEEAAKL 654
            CY+CQG GH  R+CPN K++L +       +S  ES D++     P+ +    D    ++
Sbjct: 317  CYRCQGRGHYARECPNTKKILTTGKDEREYMSANESDDEELE---PIGERQKDDHSEEEV 373

Query: 653  DEYICSPLDSPGHVPLSLVTRRVLTAKEGTLLDQRENLFHTKCAVQGASLSVIIDGGSCC 474
             E      +   H  LS +   VL  +E     QREN+F+ KC + GA+ S IIDGGSC 
Sbjct: 374  QEDDALHFNCVVHKALSTLV--VLDQEE-----QRENIFYGKCKIPGATCSFIIDGGSCT 426

Query: 473  NIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPM 294
            N+I+E V+   K  T  HPQPY LQW+++ D    V +Q  I  SIG Y+D VLCDVIPM
Sbjct: 427  NVISEDVVNAMKIPTIQHPQPYKLQWLND-DGELKVHKQALISISIGKYQDDVLCDVIPM 485

Query: 293  DATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQ 114
             A H+LLGRPWQ+D+  LH G  N Y     G+K TL P++P+E+    ++  +++    
Sbjct: 486  HACHILLGRPWQYDRDTLHHGKTNKYTIHKGGKKYTLTPLAPKEVYNLQVQSKKLREELA 545

Query: 113  AKAK 102
             KAK
Sbjct: 546  QKAK 549



 Score = 98.2 bits (243), Expect = 1e-17
 Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 22/200 (11%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCT---- 1346
            ++P F G+ +P  FL+W   +E +   + + EE++  T+       AK WW         
Sbjct: 88   EMPTFNGDDEPEVFLNWVDEVEDIFGLHNFGEEKKFKTAIASLKDFAKLWWKQLSRRRLE 147

Query: 1345 DCERPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIH 1166
            D + P+ +W  L R M +K+VP +F  +MR K+Q   QG++S  +FY E+E L  +A I 
Sbjct: 148  DQDEPIETWGELKREMRRKFVPSNFYRDMRRKLQELKQGSKSVREFYKEMERLKARANIQ 207

Query: 1165 HTDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEI-----------------WSQ 1037
              DE   +  L G +  IR +LR     D+ K    A ++                 W Q
Sbjct: 208  EDDETTIARILEGFNRDIRRELRNQEFDDVDKLVRVASKVEDELRSERGSKPSLSSQWDQ 267

Query: 1036 AQEAKRASW-SRTNTRYAPP 980
             + A   S+ SRT   Y+ P
Sbjct: 268  PRRATNNSYQSRTQKEYSRP 287


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  185 bits (469), Expect = 9e-44
 Identities = 93/242 (38%), Positives = 140/242 (57%), Gaps = 4/242 (1%)
 Frame = -3

Query: 815 CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
           C+KC G GH+  +CP  + ++              +AD  +       EE  + +EY   
Sbjct: 313 CFKCLGRGHIASECPTRRTMIM-------------KADGEITSESEISEEEVEEEEYEEE 359

Query: 635 PLDSPGHVPLSLVTRRVLTAKEGTLLD-QRENLFHTKCAVQGASLSVIIDGGSCCNIINE 459
            +         L+ RR+L  +   L D QREN+FHT+C + G   S+I+DGGSC N+ + 
Sbjct: 360 AMQGD-----MLMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASS 414

Query: 458 KVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATHL 279
            ++     +T PHP+PY LQW+SE D+   V +Q  +  +IG Y D VLCDV+PM+ATH+
Sbjct: 415 TLVTKLNLETKPHPRPYKLQWLSE-DEEVKVTQQVEVCLTIGRYNDKVLCDVVPMEATHV 473

Query: 278 LLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHI---ERNRIKALEQAK 108
           LLGRPWQ+D +A+HDGF N   F    +K+ L P+SPQE+ +D I   E+ + + LE+ K
Sbjct: 474 LLGRPWQYDTKAVHDGFTNKISFQQADKKIVLKPLSPQEVCEDQIKMREKKKSETLERKK 533

Query: 107 AK 102
           ++
Sbjct: 534 SE 535



 Score = 95.5 bits (236), Expect = 1e-16
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDC--- 1340
            +P F G  DP  +LDW+   E+V     Y + ++V  +A  F   A  WWH +  +    
Sbjct: 84   VPPFKGRSDPDAYLDWEMKTEHVFACNDYTDAQKVKLAAAEFSDYALVWWHKYQREMLRE 143

Query: 1339 -ERPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHH 1163
              R V +W  + R+M K+YVP  +   MR K+Q  +QGN +  ++Y E+E    +A I  
Sbjct: 144  ERREVDTWTEMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEE 203

Query: 1162 TDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTNT 995
              ED  + FL GL+  IR+ + +     L    H A  +    Q+ KR S +R N+
Sbjct: 204  DSEDTMARFLNGLNPEIRDVVELQEYVVLDDLLHRALRV---EQQIKRRSATRRNS 256


>gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]
          Length = 803

 Score =  185 bits (469), Expect = 9e-44
 Identities = 109/267 (40%), Positives = 150/267 (56%), Gaps = 10/267 (3%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
            C+KC+G+GH  ++CP  + ++      YE   +      P  D   + +E  + D    +
Sbjct: 382  CHKCKGYGHFAKECPTKRTMVVVVEHAYEQESE------PEEDEGVEGDEGVEEDGEDDT 435

Query: 635  PLDSPGHVPLSLVTRRVL---TAKEGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNII 465
              D   H    LV RR L    A++G  L QRENLFH +C V+G   S+IID GSC N++
Sbjct: 436  VEDEEPHT--FLVVRRSLGAMIAEDGETL-QRENLFHARCRVKGVVCSMIIDSGSCTNVV 492

Query: 464  NEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDAT 285
            ++ +I   K  T  HP+PY LQW+SE  +  VVK Q  I F +G Y D  L DV+PM A 
Sbjct: 493  SQSLITQLKLPTMKHPKPYRLQWLSECGELKVVK-QAMIKFKMGSYVDEHLFDVVPMQAC 551

Query: 284  HLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKAL-EQAK 108
            HLL GRPWQFD++ +H+G +NNY   H GRK  L P++P+++  D+   NR+K L E AK
Sbjct: 552  HLLFGRPWQFDRQVVHNGRVNNYTLQHEGRKFVLKPLTPKQVSDDY---NRMKELREAAK 608

Query: 107  AKASRE--PPQKS----APKSGIQGSC 45
            AK+  E  P  KS     P S   G C
Sbjct: 609  AKSIIETSPLSKSMVAIPPSSSTGGIC 635



 Score = 59.7 bits (143), Expect = 6e-06
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 7/184 (3%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDCER- 1334
            LP F G  DP  ++DW   +E + +     +E++ T +   F+  A  WW        R 
Sbjct: 144  LPPFKGNCDPSAYIDWVLQIERLFDTNDMTDEKKGTYAISSFESYASTWWESVKRSRRRA 203

Query: 1333 --PV-TSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHH 1163
              PV   W  L  +M  KY+   +  E   ++    QG ++  ++Y E E +     +  
Sbjct: 204  GVPVNVGWHDLKGLMSIKYITPRYRQEQLKRLYELKQGVKTVHEYYDEFERVRMALDMDT 263

Query: 1162 TDEDFRSI-FLRGLHEPIRNQLRVLNKRDLQKCAHTA--QEIWSQAQEAKRASWSRTNTR 992
             DE+   I F+ GL   I +QLR+ +   LQ+    A   E W   +++ R     T+T 
Sbjct: 264  EDEEQAVIRFMNGLSYGIASQLRLHSYLSLQEGLDAAIQAEQWLDKEKSNRYK-GNTSTS 322

Query: 991  YAPP 980
             + P
Sbjct: 323  MSKP 326


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  185 bits (469), Expect = 9e-44
 Identities = 102/263 (38%), Positives = 155/263 (58%), Gaps = 7/263 (2%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDD-DTRADPPVFDSYAQDEEAAKLDEYIC 639
            C +C+G+GHV++DCP+ + ++  A  GY S  D D      +  + A++ +A   DE   
Sbjct: 399  CLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAPHQDEEHI 458

Query: 638  SPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNIIN 462
               ++  H   SLV +RVL+A+ E    +QR  LF TKC ++  S  VIIDGGSC N+ +
Sbjct: 459  GA-EAAEHYE-SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLAS 516

Query: 461  EKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATH 282
             ++++     T PHPQPY +QW++      V  R   +HF+IG Y D + CDV+PM A  
Sbjct: 517  AEMVEKLALSTQPHPQPYYIQWLNSSGKVKVT-RLVRVHFAIGSYHDSINCDVVPMQACS 575

Query: 281  LLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIER-NRIKALEQAKA 105
            +LLGRPWQFDK +LH G  N Y F+HNG+K+ L PMSP+ I++D + R ++ K  E  ++
Sbjct: 576  MLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRS 635

Query: 104  K----ASREPPQKSAPKSGIQGS 48
            +    A+     K  P + +Q +
Sbjct: 636  EHLIAANELEKHKKKPTNSVQNN 658



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFC-TDCER 1334
            +P F G++DP  +L W+ +++     + +PE + V  +   F   A  WW  F  ++   
Sbjct: 159  IPCFDGKYDPDAYLTWELAIDQKFACHDFPENKCVRAATSEFTDFASIWWSEFVRSNPNN 218

Query: 1333 PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
               +W  + R+M  ++VP     ++  K+Q   QGN+S  ++Y  L+    + G+   D+
Sbjct: 219  TPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVENDD 278

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I++ L       +    H A +   + Q  +RAS+ RTN
Sbjct: 279  AGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQ-GRRASF-RTN 328


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  183 bits (465), Expect = 3e-43
 Identities = 102/272 (37%), Positives = 150/272 (55%), Gaps = 1/272 (0%)
 Frame = -3

Query: 818  VCYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYIC 639
            +CY+C+G+GHVQRDCPN + ++     GY S  D    D       A D+   K      
Sbjct: 393  LCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASD---LDEATLALLAADDAGTKEPPEEQ 449

Query: 638  SPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNIIN 462
               D   H   SL+ +RVL+A+ E    +QR  LF TKC ++  S  +IIDGGSC N+ +
Sbjct: 450  IGADDAEHYE-SLIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLAS 508

Query: 461  EKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATH 282
              +++     T PHP PY +QW++      V K    I+F+IG Y+D V CDV+PMDA +
Sbjct: 509  SDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKL-VRINFAIGSYRDVVDCDVVPMDACN 567

Query: 281  LLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQAKAK 102
            +LLGRPWQFD   +H G  N Y  +H+ +K+ LLPMSP+ I++D + +       +AK +
Sbjct: 568  ILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVAK-----ATKAKTE 622

Query: 101  ASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
             ++        K GI+   +   LLA   D++
Sbjct: 623  NNKNIKVVGNNKDGIK--LKGHCLLATKTDVN 652



 Score = 74.3 bits (181), Expect = 2e-10
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 1/179 (0%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWW-HHFCTDCE 1337
            K+P F G++DP  ++ W+ +++     + +PE  RV  +   F   A  WW  H   +  
Sbjct: 150  KIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVWWIEHGKKNPN 209

Query: 1336 RPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTD 1157
                +W  L R+M  ++VP  +  +M  K+Q   QG +S  ++Y EL+    +  I   +
Sbjct: 210  NMPQTWDALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGE 269

Query: 1156 EDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTNTRYAPP 980
            E   + FL GL+  I++ L   +  ++ +  H A +   + Q  + ++ S  +   + P
Sbjct: 270  ESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTP 328


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  179 bits (455), Expect = 4e-42
 Identities = 102/270 (37%), Positives = 155/270 (57%), Gaps = 14/270 (5%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGY---ESFDDDTRA-----DPPVFDSYAQDEEAA 660
            C +C+G+GHV++DCP+ + ++  A  GY      D++T A     +    D+  QDEE  
Sbjct: 399  CLRCKGYGHVRKDCPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGDAPHQDEEHI 458

Query: 659  KLDEYICSPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGG 483
            + +        +  H   SLV +RVL+A+ E    +Q   LF TKC ++  S  VIIDGG
Sbjct: 459  RAE--------AAEHYE-SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGG 509

Query: 482  SCCNIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDV 303
            SC N+ + ++++     T PHPQPY +QW++      V  R   +HF+IG Y D + CDV
Sbjct: 510  SCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVT-RLVRVHFAIGSYHDSINCDV 568

Query: 302  IPMDATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIER-NRIK 126
            +PM A  +LLGRPWQFDK +LH G  N Y F+HNG+K+ L PMSP+ I++D + R ++ K
Sbjct: 569  VPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQK 628

Query: 125  ALEQAKAK----ASREPPQKSAPKSGIQGS 48
              E  +++    A+     K  P + +Q +
Sbjct: 629  NQEHTRSEHLIAANELEKHKKKPTNSVQNN 658



 Score = 70.9 bits (172), Expect = 3e-09
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFC-TDCER 1334
            +P F G++DP  +L W+ ++      + +PE +RV  +   F   A  WW  F  ++   
Sbjct: 159  IPCFDGKYDPDAYLTWELAIVQKFACHDFPENKRVRAATSEFTDFASIWWSEFVRSNPNN 218

Query: 1333 PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
               +W  + R+M  ++VP     ++  K+Q   QGN+S  ++Y  L+    + G+   D+
Sbjct: 219  TPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRCGLVENDD 278

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I++ L       + +  H A +   + Q  +RAS+ RTN
Sbjct: 279  AGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQ-GRRASF-RTN 328


>gb|EOY10285.1| Uncharacterized protein TCM_025656 [Theobroma cacao]
          Length = 505

 Score =  179 bits (454), Expect = 5e-42
 Identities = 101/243 (41%), Positives = 140/243 (57%), Gaps = 4/243 (1%)
 Frame = -3

Query: 821 KVCYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYI 642
           K C+KCQG GH+  DCPN + +       Y +++       PV+D Y  DEE  ++    
Sbjct: 147 KKCFKCQGFGHIAFDCPNRRIISLVEEEDYANWEKLE----PVYDEY-DDEEIEEV---- 197

Query: 641 CSPLDSPGHVPLSLVTRRVLTA---KEGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCN 471
                S  H    +V R + TA   K+ + L  R N+F+T+C  QG   +VIID GSC N
Sbjct: 198 -----SADHGEALIVRRNLNTAMMTKDESWL--RHNIFYTRCTSQGKVCNVIIDSGSCEN 250

Query: 470 IINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGH-YKDFVLCDVIPM 294
           +I   +++  K  T  HP PY LQW+ +G++  V KR C + FSIG+ Y+D V CD+IPM
Sbjct: 251 VIANYMVEKLKLQTEVHPHPYKLQWLRKGNEVKVTKR-CCVQFSIGNKYEDEVWCDIIPM 309

Query: 293 DATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQ 114
           DA HLLLGRPWQ+D+RA HDG+ N Y F+ +G K+ L P+ P+         NR K  E+
Sbjct: 310 DACHLLLGRPWQYDRRAHHDGYKNTYSFIKDGAKIMLTPLKPE---------NRPKRQEE 360

Query: 113 AKA 105
            KA
Sbjct: 361 DKA 363


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  179 bits (454), Expect = 5e-42
 Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 1/247 (0%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
            C+KC G GH+  +CP+ + +L      YES   +            ++EE   + E    
Sbjct: 344  CHKCHGRGHMMHECPSRRNILLRENGEYESEKSER-----------EEEEGEGVSEEDDL 392

Query: 635  PLDSPGHVPLSLVTRRVLTAKEGTLLD-QRENLFHTKCAVQGASLSVIIDGGSCCNIINE 459
             L + G +    V RR++T   G++ + QRENLFHT+C ++G + S+IIDGGSC N+++ 
Sbjct: 393  ELPNDGIIG---VVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSS 449

Query: 458  KVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATHL 279
             ++            PY LQW+++  +  V K QC I F++G Y+D +LCDV+PM A H+
Sbjct: 450  YLVDKLGIACMKRSTPYRLQWLNDCGEVQVNK-QCMISFNVGRYEDEILCDVVPMQACHV 508

Query: 278  LLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQAKAKA 99
            LLGRPWQ+D+   H G  N Y  +HNG+K TL P+SP ++ +D          ++ + K+
Sbjct: 509  LLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVKS 568

Query: 98   SREPPQK 78
              E  +K
Sbjct: 569  ELEGKEK 575



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 44/179 (24%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDCER 1334
            K+ +F G  DP  +LDW++ +E + + + Y E ++V  + + F   A +WW     D  +
Sbjct: 120  KMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEFSDYAASWWKKLARDRLQ 179

Query: 1333 ----PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIH 1166
                P+ +W  + R+M K+++P  F  +++ ++Q   QG+ S  +++  ++    +A   
Sbjct: 180  EELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCM 239

Query: 1165 HTDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKR-ASW-SRTNT 995
              +E   + FL GL+  I N + +     L +    + ++  Q ++ ++  SW SR NT
Sbjct: 240  EEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNT 298


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  179 bits (454), Expect = 5e-42
 Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 1/247 (0%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
            C+KC G GH+  +CP+ + +L      YES   +            ++EE   + E    
Sbjct: 344  CHKCHGRGHMMHECPSRRNILLRENGEYESEKSER-----------EEEEGEGVSEEDDL 392

Query: 635  PLDSPGHVPLSLVTRRVLTAKEGTLLD-QRENLFHTKCAVQGASLSVIIDGGSCCNIINE 459
             L + G +    V RR++T   G++ + QRENLFHT+C ++G + S+IIDGGSC N+++ 
Sbjct: 393  ELPNDGIIG---VVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSS 449

Query: 458  KVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATHL 279
             ++            PY LQW+++  +  V K QC I F++G Y+D +LCDV+PM A H+
Sbjct: 450  YLVDKLGIACMKRSTPYRLQWLNDCGEVQVNK-QCMISFNVGRYEDEILCDVVPMQACHV 508

Query: 278  LLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQAKAKA 99
            LLGRPWQ+D+   H G  N Y  +HNG+K TL P+SP ++ +D          ++ + K+
Sbjct: 509  LLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVKS 568

Query: 98   SREPPQK 78
              E  +K
Sbjct: 569  ELEGKEK 575



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 44/179 (24%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDCER 1334
            K+ +F G  DP  +LDW++ +E + + + Y E ++V  + + F   A +WW     D  +
Sbjct: 120  KMSSFKGTRDPDLYLDWERRVEAIFDCHNYSEGKKVKLAVVEFSDYAASWWKKLARDRLQ 179

Query: 1333 ----PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIH 1166
                P+ +W  + R+M K+++P  F  +++ ++Q   QG+ S  +++  ++    +A   
Sbjct: 180  EELPPIATWAEMKRVMRKRFIPSYFQRDLQSRLQRLKQGSMSVDEYFKSMDMAMIQANCM 239

Query: 1165 HTDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKR-ASW-SRTNT 995
              +E   + FL GL+  I N + +     L +    + ++  Q ++ ++  SW SR NT
Sbjct: 240  EEEEATIARFLNGLNTEIANVVEIQQYVTLDELVDLSVKVEKQIEKKQQNNSWRSRPNT 298


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  179 bits (453), Expect = 7e-42
 Identities = 107/279 (38%), Positives = 156/279 (55%), Gaps = 9/279 (3%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYES----FDDDT----RADPPVFDSYAQDEEAA 660
            C++C+G GHVQRDCP+ KRVL     G  S    FDDDT     AD    +   +   AA
Sbjct: 486  CHRCKGFGHVQRDCPS-KRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAA 544

Query: 659  KLDEYICSPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGG 483
              D Y             SL+ +RVL+A+ E    +QR  LF TKC V+     +IIDGG
Sbjct: 545  FADHYE------------SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGG 592

Query: 482  SCCNIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDV 303
            SC N+ + ++++     T PHP PY +QW++    + V K    I+F+IG+Y D V CDV
Sbjct: 593  SCNNLASSEMVEKLALSTKPHPHPYCIQWLNNSGKAKVTKL-VHINFAIGNYHDVVECDV 651

Query: 302  IPMDATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKA 123
            +PM A ++LLGRPWQFD+ ++H G  N Y F+++ +K+ L PMSP++I++D + +     
Sbjct: 652  VPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAK----- 706

Query: 122  LEQAKAKASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
               AK+K   +   +S  K     + + R LLA   DI+
Sbjct: 707  --AAKSKCESDKKAQSDGKKPETINLKPRYLLATKSDIN 743



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWW-HHFCTDCE 1337
            K+P F G++DP  +L W+ +++     + +PE  RV  +   F   A  WW  H   +  
Sbjct: 250  KIPPFDGKYDPDAYLSWEIAVDQKFACHEFPENTRVRAATSEFTDFASVWWIEHGKKNPN 309

Query: 1336 RPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTD 1157
                +W  L R+M  ++VP  +  ++  ++Q   QG +S  ++Y EL+    +  +  T+
Sbjct: 310  NMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGVKSVEEYYQELQMGLLRCNLEETE 369

Query: 1156 EDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTA----QEIWSQAQEAK----RASWSRT 1001
            +   + FL GL+  I + +      ++ +  H A    +E+  +   AK        S  
Sbjct: 370  DAAMARFLGGLNREIYDIVDYKVYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSW 429

Query: 1000 NTRYAPP 980
             TR  PP
Sbjct: 430  QTRTTPP 436


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  178 bits (452), Expect = 9e-42
 Identities = 100/263 (38%), Positives = 151/263 (57%), Gaps = 7/263 (2%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDD-DTRADPPVFDSYAQDEEAAKLDEYIC 639
            C +C+G+GHV++DCP+ + ++  A  GY S  D D      +  + A   +A   DE   
Sbjct: 399  CLRCKGYGHVRKDCPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAPHQDEEHI 458

Query: 638  SPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNIIN 462
               ++  H   SLV +RVL+A+ E    +QR  LF TKC ++  S  VIID GSC N+ +
Sbjct: 459  GA-EAAEHYE-SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLAS 516

Query: 461  EKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATH 282
             ++++     T PHPQPY +QW++      V  R   +HF+IG Y D + CDV+PM A  
Sbjct: 517  AEMVEKLALSTQPHPQPYYIQWLNSSGKVKVT-RLVRVHFAIGSYHDSINCDVVPMQACS 575

Query: 281  LLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIER-NRIKALEQAKA 105
            + LGRPWQFDK +LH G  N Y F+HNG+K+ L PMSP+ I++D + R ++ K  E  ++
Sbjct: 576  IFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRS 635

Query: 104  K----ASREPPQKSAPKSGIQGS 48
            +    A+     K  P + +Q +
Sbjct: 636  EHLIAANELEKHKKKPTNSVQNN 658



 Score = 70.1 bits (170), Expect = 4e-09
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFC-TDCER 1334
            +P F  ++DP  +L W+ +++     + +PE +RV  +   F   A  WW  F  ++   
Sbjct: 159  IPCFDEKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWWSEFVRSNPNN 218

Query: 1333 PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
               +W  + R+M  ++VP     ++  K+Q   QGN+S  ++Y  L+    + G+   D+
Sbjct: 219  TPQTWDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCGLVENDD 278

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I++ L       + +  H A +   + Q  +RAS+ RTN
Sbjct: 279  AGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQ-GRRASF-RTN 328


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  178 bits (451), Expect = 1e-41
 Identities = 105/284 (36%), Positives = 153/284 (53%), Gaps = 13/284 (4%)
 Frame = -3

Query: 818  VCYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDE----EAAKLD 651
            +C +C+G GH  R+CP+ + ++ +   GY+S  D    D       A +E    + A+  
Sbjct: 432  ICRRCKGGGHYARECPSKRVMIITEDGGYDSASD---YDEETLALIASEERGVADTAQET 488

Query: 650  EYICSPLDSPGHVPLSLVTRRVLTAKEGTL-LDQRENLFHTKCAVQGASLSVIIDGGSCC 474
            +Y+ +          SLV +RVL+ +   +  +QR NLFHTK  V+  S+ VIIDGGSC 
Sbjct: 489  QYMAADYADRYE---SLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCN 545

Query: 473  NIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPM 294
            N+ + ++++     T PHP PY +QW +      V  R   +HFSI  Y DFV CDV+PM
Sbjct: 546  NLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVT-RTVRVHFSIATYSDFVDCDVVPM 604

Query: 293  DATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIER------NR 132
             A  +LLGRPWQFDK ++H G  N Y  +H  + +TLLPMSP+ IM+D I R      + 
Sbjct: 605  QACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDL 664

Query: 131  IKALEQAKAK--ASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
             K+  Q  AK       P KS+     +   ++  LLA   DI+
Sbjct: 665  HKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDIT 708



 Score = 69.3 bits (168), Expect = 7e-09
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDCERP 1331
            +P+F G + P  +L W+   E      ++PE+ RV  +   F   A  WW  +C      
Sbjct: 192  IPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACXWWSEYCRIHHAN 251

Query: 1330 V-TSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
            +  +W  L   M  ++VP  +  ++   +Q   QG +S  ++Y EL+    + GI   +E
Sbjct: 252  IPATWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNE 311

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I+  L   +   + +  H A +   + Q+  R + +RTN
Sbjct: 312  AMLARFMGGLNRDIQTILEYKDYXTITRLFHLACKAEREVQD--RQALARTN 361


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  178 bits (451), Expect = 1e-41
 Identities = 105/284 (36%), Positives = 153/284 (53%), Gaps = 13/284 (4%)
 Frame = -3

Query: 818  VCYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDE----EAAKLD 651
            +C +C+G GH  R+CP+ + ++ +   GY+S  D    D       A +E    + A+  
Sbjct: 429  ICRRCKGGGHYARECPSKRVMIITEDGGYDSASD---YDEETLALIASEERGVXDTAQET 485

Query: 650  EYICSPLDSPGHVPLSLVTRRVLTAKEGTL-LDQRENLFHTKCAVQGASLSVIIDGGSCC 474
            +Y+ +          SLV +RVL+ +   +  +QR NLFHTK  V+  S+ VIIDGGSC 
Sbjct: 486  QYMAADYADRYE---SLVAQRVLSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCN 542

Query: 473  NIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPM 294
            N+ + ++++     T PHP PY +QW +      V  R   +HFSI  Y DFV CDV+PM
Sbjct: 543  NLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVT-RTVRVHFSIATYSDFVDCDVVPM 601

Query: 293  DATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIER------NR 132
             A  +LLGRPWQFDK ++H G  N Y  +H  + +TLLPMSP+ IM+D I R      + 
Sbjct: 602  QACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDL 661

Query: 131  IKALEQAKAK--ASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
             K+  Q  AK       P KS+     +   ++  LLA   DI+
Sbjct: 662  HKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDIT 705



 Score = 69.7 bits (169), Expect = 6e-09
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDCERP 1331
            +P+F G + P  +L W+   E      ++PE+ RV  +   F   A  WW  +C      
Sbjct: 189  IPSFDGRYVPDLYLTWELETEQRFTCLQFPEDRRVAAAVCSFTSFACIWWSEYCRIHHAN 248

Query: 1330 V-TSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
            +  +W  L   M  ++VP  +  ++   +Q   QG +S  ++Y EL+    + GI   +E
Sbjct: 249  IPATWAALKTAMRTRWVPPYYQRDLLQNLQRLRQGKKSVEEYYQELQTGMIRCGIVEDNE 308

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I+  L   +   + +  H A +   + Q+  R + +RTN
Sbjct: 309  AMLARFMGGLNRDIQTILEYKDYNTITRLFHLACKAEREVQD--RQALARTN 358


>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1234

 Score =  177 bits (449), Expect = 2e-41
 Identities = 106/279 (37%), Positives = 156/279 (55%), Gaps = 9/279 (3%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYES----FDDDT----RADPPVFDSYAQDEEAA 660
            C++C+G GHVQRDCP+ KRVL     G  S    FDDDT     AD    +   +   AA
Sbjct: 337  CHRCKGFGHVQRDCPS-KRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAA 395

Query: 659  KLDEYICSPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGG 483
              D Y             SL+ +RVL+A+ E    +QR  LF TKC V+     +IIDGG
Sbjct: 396  FADHYE------------SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGG 443

Query: 482  SCCNIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDV 303
            SC N+ + ++++     T PHP PY +QW++    + V K    I+F+IG+Y D V CDV
Sbjct: 444  SCKNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKL-VHINFAIGNYHDVVECDV 502

Query: 302  IPMDATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKA 123
            +PM A ++LLGRPWQFD+ ++H G  N Y F+++ +K+ L PMSP++I++D + +     
Sbjct: 503  VPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAK----- 557

Query: 122  LEQAKAKASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
               AK+K   +   +S  K     + + + LLA   DI+
Sbjct: 558  --AAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDIN 594



 Score = 69.3 bits (168), Expect = 7e-09
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWW-HHFCTDCE 1337
            K+P F G++DP  +L W+ +++     + +PE  RV  +   F   A  WW  H   +  
Sbjct: 156  KIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATSEFTDFASVWWIEHGKKNPN 215

Query: 1336 RPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTD 1157
                +W  L R+M  ++VP  +  ++  ++Q   QG +S  ++Y EL+    +  +  T+
Sbjct: 216  NMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETE 275

Query: 1156 EDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRAS 1013
            +   + FL GL+  I + +   +  ++ +  H A +   + Q  +RAS
Sbjct: 276  DAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQ-GRRAS 322


>ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659640 [Glycine max]
          Length = 594

 Score =  177 bits (448), Expect = 2e-41
 Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%)
 Frame = -3

Query: 815 CYKCQGHGHVQRDCPNNKRVLFSALSGYESFDDDTRADPPVFDSYAQDEEAAKLDEYICS 636
           C+KC G GH+  +CP  + ++              +AD  +       EE  + +EY   
Sbjct: 313 CFKCLGRGHIASECPTRRTMIM-------------KADGEITSESEISEEEVEEEEYEEE 359

Query: 635 PLDSPGHVPLSLVTRRVLTAKEGTLLD-QRENLFHTKCAVQGASLSVIIDGGSCCNIINE 459
            +         L+ RR+L  +   L D QREN+FHT+C + G   S+I+DGGSC N+ + 
Sbjct: 360 AMQGD-----MLMVRRLLGNQMQPLDDNQRENIFHTRCVINGKLCSLIVDGGSCTNVASS 414

Query: 458 KVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDATHL 279
            ++     +T PHP+PY LQW+SE D+   V +Q  +  +IG Y D VLCDV+PM+ATH+
Sbjct: 415 TLVTKLNLETKPHPRPYKLQWLSE-DEEIKVTQQVEVCLTIGRYNDKVLCDVVPMEATHV 473

Query: 278 LLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQD 150
           LLGRPWQ+D +A+HDGF N   F    +K+ L P+SPQE   D
Sbjct: 474 LLGRPWQYDTKAVHDGFTNKISFQQADKKIVLKPLSPQEDFDD 516



 Score = 95.5 bits (236), Expect = 1e-16
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFCTDC--- 1340
            +P F G  DP  +LDW+   E+V     Y + ++V  +A  F   A  WWH +  +    
Sbjct: 84   VPPFKGRSDPDAYLDWEMKTEHVFACNDYTDAQKVKLAAAEFSDYALVWWHKYQREMLRE 143

Query: 1339 -ERPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHH 1163
              R V +W  + R+M K+YVP  +   MR K+Q  +QGN +  ++Y E+E    +A I  
Sbjct: 144  ERREVDTWTEMKRVMRKRYVPTSYNRTMRQKLQGLSQGNLTVEEYYKEMEMALVRANIEE 203

Query: 1162 TDEDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTNT 995
              ED  + FL GL+  IR+ + +     L    H A  +    Q+ KR S +R N+
Sbjct: 204  DSEDTMARFLNGLNPEIRDVVELQEYVVLDDLLHRALRV---EQQIKRKSATRRNS 256


>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
          Length = 1131

 Score =  176 bits (447), Expect = 3e-41
 Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 4/246 (1%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYES---FDDDTRADPPVFDSYAQDEEAAKLDEY 645
            C +C+G+GHV++DCP+ + ++      Y S    D++T A     ++  +DEE  K +E+
Sbjct: 398  CLRCKGYGHVRKDCPSARVLVVCPNGEYSSASDLDEETYALLAA-NNVGEDEEHNKNEEH 456

Query: 644  ICSPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGGSCCNI 468
            I +          SLV +RVL+A+ E    +QR  LF TKC ++  S  VIIDGGSC N+
Sbjct: 457  IGTEHAENYE---SLVVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNL 513

Query: 467  INEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDVIPMDA 288
             + ++++     T PHPQPY +QW++      V  R   ++F+IG Y D + CDV+PM A
Sbjct: 514  ASAEMVEKLALCTQPHPQPYYIQWLNSSGKVKVT-RLVRVNFAIGSYHDSIDCDVVPMQA 572

Query: 287  THLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKALEQAK 108
              +LLGRPWQFD  +LH G  N Y FMHN +K+ L PMSP+ I++D + R   K + Q  
Sbjct: 573  CSMLLGRPWQFDIDSLHHGKTNQYSFMHNDKKLVLHPMSPEAILKDELAR-ASKVMNQEH 631

Query: 107  AKASRE 90
            AK+  +
Sbjct: 632  AKSENQ 637



 Score = 75.9 bits (185), Expect = 8e-11
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
 Frame = -1

Query: 1510 LPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWWHHFC-TDCER 1334
            +P+F G++DP  +L W+ +++     + +PE +R+  +   F   A  WW  +  +    
Sbjct: 158  MPSFDGKYDPNAYLTWELAVDQKFACHDFPENKRIRAATSEFTDFASIWWSEYVRSHPNN 217

Query: 1333 PVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTDE 1154
               +W  + R+M  ++VP     ++  K+QL  QGN+S  ++Y EL+    + G+   ++
Sbjct: 218  TPQTWDAMKRVMRARFVPSYHARDLLHKLQLLRQGNKSVEEYYQELQTGMLRCGLVENED 277

Query: 1153 DFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTAQEIWSQAQEAKRASWSRTN 998
               + F+ GL+  I++ L       + +  H A +   + Q  +RAS +RTN
Sbjct: 278  AAMARFMGGLNREIQDILAYKEYNSITRLFHLACKAEREVQ-GRRAS-TRTN 327


>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
          Length = 1431

 Score =  176 bits (446), Expect = 4e-41
 Identities = 106/279 (37%), Positives = 155/279 (55%), Gaps = 9/279 (3%)
 Frame = -3

Query: 815  CYKCQGHGHVQRDCPNNKRVLFSALSGYES----FDDDT----RADPPVFDSYAQDEEAA 660
            C++C+G GHVQRDCP+ KRVL     G  S    FDDDT     AD    +   +   AA
Sbjct: 392  CHRCKGFGHVQRDCPS-KRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEEHIGAA 450

Query: 659  KLDEYICSPLDSPGHVPLSLVTRRVLTAK-EGTLLDQRENLFHTKCAVQGASLSVIIDGG 483
              D Y             SL+ +RVL+A+ E    +QR  LF TKC V+     +IIDGG
Sbjct: 451  FADHYE------------SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGG 498

Query: 482  SCCNIINEKVIQHFKFDTTPHPQPYSLQWISEGDDSNVVKRQCTIHFSIGHYKDFVLCDV 303
            SC N+ + ++++     T PHP PY +QW++    + V      I+F+IG+Y D V CDV
Sbjct: 499  SCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTNL-VHINFAIGNYHDVVECDV 557

Query: 302  IPMDATHLLLGRPWQFDKRALHDGFLNNYVFMHNGRKVTLLPMSPQEIMQDHIERNRIKA 123
            +PM A ++LLGRPWQFD+ ++H G  N Y F+++ +K+ L PMSP++I++D + +     
Sbjct: 558  LPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAK----- 612

Query: 122  LEQAKAKASREPPQKSAPKSGIQGSCENRLLLARSRDIS 6
               AK+K   +   +S  K     + + R LLA   DI+
Sbjct: 613  --AAKSKCESDKKAQSDGKKPETINLKPRCLLATKSDIN 649



 Score = 70.1 bits (170), Expect = 4e-09
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 9/187 (4%)
 Frame = -1

Query: 1513 KLPNFFGEFDPLKFLDWKQSMEYVLNHYRYPEEERVTTSALYFDGAAKAWW-HHFCTDCE 1337
            K+P F G++DP  +L W+ +++     + +PE  RV  +   F   A  WW  H   +  
Sbjct: 156  KIPPFDGKYDPDAYLSWEIAVDQKFACHEFPENTRVRAATSEFTDFASVWWIEHGKKNPN 215

Query: 1336 RPVTSWRHLMRIM*KKYVPEDFTSEMRLKIQLAAQGNRSPLDFYAELEELSHKAGIHHTD 1157
                +W  L R+M  ++VP  +  ++  ++Q   QG +S  ++Y EL+    +  +  T+
Sbjct: 216  NMPQTWDALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETE 275

Query: 1156 EDFRSIFLRGLHEPIRNQLRVLNKRDLQKCAHTA----QEIWSQAQEAK----RASWSRT 1001
            +   + FL GL+  I + +   +  ++ +  H A    +E+  +   AK        S  
Sbjct: 276  DAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSW 335

Query: 1000 NTRYAPP 980
             TR  PP
Sbjct: 336  QTRTTPP 342