BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00020426
         (1235 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   492   e-136
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [...   477   e-132
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   468   e-129
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   463   e-128
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   461   e-127
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   459   e-127
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   457   e-126
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   456   e-126
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   456   e-125
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   454   e-125
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   453   e-125
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   451   e-124
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   450   e-124
gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, ...   449   e-124
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   449   e-123
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   447   e-123
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   444   e-122
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   444   e-122
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   443   e-122
gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   442   e-121

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  492 bits (1266), Expect = e-136
 Identities = 261/387 (67%), Positives = 300/387 (77%), Gaps = 13/387 (3%)
 Frame = -1

Query: 1124 RVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEE-VVD-QQKPGKSRLDSWISSRILG 951
            RV R +RA +++  TDE    +S RR NY GV+LEE VVD     GK RLDSWISSRI+G
Sbjct: 32   RVFRILRACSNS--TDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIG 89

Query: 950  ISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYED 771
            ISRARVQSSIR GLV+VN+RI+DKVS  +RAGDK+ CTISELQPLRAEPEDI LDI YED
Sbjct: 90   ISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYED 149

Query: 770  DHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXXXXXXXXXXXXX 591
            +H+LVVNKP+ MVVHPAPGNA+GTLVN ILHHC LPTVALP+ +                
Sbjct: 150  EHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRD---------------- 193

Query: 590  XSPDQISFTEMNS----------SFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFK 441
               D IS  E NS            ++RPGIVHRLDKGTSGL+VVAKDE SH+HLSEQFK
Sbjct: 194  SEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK 253

Query: 440  ARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITG-GCSGRARHAASRYKVME 264
              +I RVYISLT GVP+P SGR+++P+GRD NNRIRMTA+ G   SG+ARHAASRYKV+E
Sbjct: 254  LHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIE 313

Query: 263  VFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHS 84
            + A GGSALVEWRLETGRTHQIR HAKYLGIPLLGDEVYGGT++MALSLL+PR P ++H 
Sbjct: 314  ILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHG 373

Query: 83   QLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            QL  LVSR+ RPCLHA+ LGF HP TG
Sbjct: 374  QLAQLVSRLDRPCLHAVALGFNHPKTG 400


>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  477 bits (1228), Expect = e-132
 Identities = 255/387 (65%), Positives = 290/387 (74%), Gaps = 1/387 (0%)
 Frame = -1

Query: 1163 KLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQKPGKSR 984
            KL PF     +R       RA  S+G   +   PI   R +Y GVQLEE VD  K GK R
Sbjct: 31   KLLPFTLSGILR------ARARPSSGCAAKTQEPI---RTSYTGVQLEETVDGTKQGKLR 81

Query: 983  LDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEP 804
            LDSWISSRI GISRARVQSSI+ GLVTVN R++DKVS  +R GDK+ C ISELQPLRAEP
Sbjct: 82   LDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLRAEP 141

Query: 803  EDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXX 624
            EDI LDI YEDDH+LVVNKP  MVVHPAPGNA GTLVN ILHHC LPTVAL +   L   
Sbjct: 142  EDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVL--- 198

Query: 623  XXXXXXXXXXXXSPDQISFTEMNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQF 444
                          D+      +++ SVRPGIVHRLDKGTSGL+VVAKDE SHSHLSEQF
Sbjct: 199  -----SDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQF 253

Query: 443  KARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITG-GCSGRARHAASRYKVM 267
            K  TIQRVYISLT GVPSP++GR+ + IGRD NNR+RM A+ G    GRARHAASRYKV+
Sbjct: 254  KQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVI 313

Query: 266  EVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYH 87
            EV A GGSAL++WRLETGRTHQIR HAKY+GIPLLGDEVYGGT+ MALSLL+PRTP  Y+
Sbjct: 314  EVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYN 373

Query: 86   SQLVDLVSRIQRPCLHAMVLGFKHPYT 6
             QL  LVSR++RP LHA+VLGF+HP++
Sbjct: 374  DQLSRLVSRLERPYLHALVLGFEHPHS 400


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  468 bits (1205), Expect = e-129
 Identities = 245/377 (64%), Positives = 289/377 (76%), Gaps = 3/377 (0%)
 Frame = -1

Query: 1124 RVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQKPGKSRLDSWISSRILGIS 945
            +VSRFVRAS+   +    + P S  R+N  G++LEE V+     K RLDSWISSR+ G+S
Sbjct: 38   KVSRFVRASSGIPNLAACSKPESIPRVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVS 97

Query: 944  RARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDH 765
            RARVQSSIR GLV+VN R++DKVS  V+AGD++ CTISELQPL+AEPEDI LDI YED H
Sbjct: 98   RARVQSSIRLGLVSVNGRVVDKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKH 157

Query: 764  LLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVAL--PDDNFLXXXXXXXXXXXXXX 591
            LLVVNKP+ MVVHPAPGN  GTLVN ILHHC LP VA   P+D+                
Sbjct: 158  LLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVAYSNPEDD-----------SDEET 206

Query: 590  XSPDQISFTEMNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYIS 411
             S D+   +  + + SVRPGIVHRLDKGTSGL+VVAKDE SH+HL+EQFK  TI+RVYIS
Sbjct: 207  LSDDEEMTSSSSLAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYIS 266

Query: 410  LTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGCS-GRARHAASRYKVMEVFADGGSALV 234
            LT GVPSP+ GR+ +PIGRD NNRIRM AI G  S G+ARHAASRYKV+E  A GGSALV
Sbjct: 267  LTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYKVIETLAGGGSALV 326

Query: 233  EWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQ 54
            EWRLETGRTHQIR HAKY+G+PLLGDEVYGGT+ +ALSLLQ R  R+   Q+++LVSR+ 
Sbjct: 327  EWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQILELVSRMD 386

Query: 53   RPCLHAMVLGFKHPYTG 3
            RPCLHA+VLGF+HP TG
Sbjct: 387  RPCLHAIVLGFEHPCTG 403


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  463 bits (1191), Expect = e-128
 Identities = 246/405 (60%), Positives = 299/405 (73%), Gaps = 7/405 (1%)
 Frame = -1

Query: 1196 MITLHSPSHSLKLNPFAPIPAIRIRVSRFVRASAST--GDTDEQNGP--ISCRRLNYEGV 1029
            M+ L++ S SL   P  P P    RVS F+  + +   GD+D  + P  I  RR NY GV
Sbjct: 1    MVALNTTSFSLL--PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGV 58

Query: 1028 QLEEVVDQQKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDK 849
            +LEE VD  K GK RLDSW+SSRI G+SRARVQSSIR GLV+VN R+ DKVS  V+ GDK
Sbjct: 59   KLEETVDS-KTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDK 117

Query: 848  IKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCK 669
            + CTI++L+PLRAEPEDI LDI YED+H+LVVNKP+ MVVHPAPGNA GTLV+ ILHHC 
Sbjct: 118  VDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCS 177

Query: 668  LPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMN--SSFSVRPGIVHRLDKGTSGL 495
            LPTV+ P +  L                    ++ + +     SVRPGIVHRLDKGTSGL
Sbjct: 178  LPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGL 237

Query: 494  IVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITG 315
            +VVAK+E S + L+EQFK  TI+RVY+S+T GVP+  +GR+ +PIGRD NNRIRM AI G
Sbjct: 238  LVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPG 297

Query: 314  -GCSGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGT 138
               SG++RHA SRYKV+E  A GGSALVEWRLETGRTHQIR HAK+LGIPL+GDEVYGGT
Sbjct: 298  TPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGT 357

Query: 137  RDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            ++MALSLLQP+TP  +H +L  LVS+I RPCLHA+ LGF+HP+TG
Sbjct: 358  KNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTG 402


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
            gi|482570987|gb|EOA35175.1| hypothetical protein
            CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  461 bits (1185), Expect = e-127
 Identities = 250/385 (64%), Positives = 291/385 (75%), Gaps = 11/385 (2%)
 Frame = -1

Query: 1124 RVSRFVRASASTGDTDEQNGPISCR-RLNYEGVQLEEVVDQQKPGKSRLDSWISSRILGI 948
            RVS FVRAS+   +    +   S   R+N  G+++EE VD  K GK RLDSWISSRI G+
Sbjct: 37   RVSDFVRASSGIHNLVACSPTESILPRVNNAGLRIEETVDDLK-GKIRLDSWISSRINGV 95

Query: 947  SRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDD 768
            SRARVQSSIR GLVTVN R++DKVS  V+AGD++ CTISELQPL+AE EDI LDI YED 
Sbjct: 96   SRARVQSSIRLGLVTVNGRVVDKVSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDK 155

Query: 767  HLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVAL--PDDNFLXXXXXXXXXXXXX 594
            H+LVVNKP+ MVVHPAPGN  GTLVN ILHHC LP+VA   P+D+               
Sbjct: 156  HVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPSVAYSSPEDD--------------- 200

Query: 593  XXSPDQISFT---EMNSS----FSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKAR 435
                D  SF+   EM SS     SVRPGIVHRLDKGT+GL+VVAKDE SH+HL+EQFK  
Sbjct: 201  --DSDDESFSDGEEMTSSSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLH 258

Query: 434  TIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGG-CSGRARHAASRYKVMEVF 258
            TI+RVY+SLT GVPSP  GRI++PIGRD +NRIRM AI GG  SGRARHAASRYKV+E  
Sbjct: 259  TIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETL 318

Query: 257  ADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQL 78
            A GGSALVEWRLETGRTHQIR HAKY+G+PLLGDEVYGGT+ MALSLLQ R  R+   ++
Sbjct: 319  AGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQDEI 378

Query: 77   VDLVSRIQRPCLHAMVLGFKHPYTG 3
            ++L+SR+ RPCLHA+VLGF HP TG
Sbjct: 379  IELISRLDRPCLHAIVLGFTHPCTG 403


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
            [Arabidopsis thaliana]
          Length = 430

 Score =  459 bits (1182), Expect = e-127
 Identities = 249/397 (62%), Positives = 293/397 (73%), Gaps = 4/397 (1%)
 Frame = -1

Query: 1181 SPSHSLKLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGP-ISCRRLNYEGVQLEEVVDQ 1005
            SPS SL +  F+  P    +VS FVRAS+   +    +   I   R+N  G+++EE+VD 
Sbjct: 23   SPSSSLSIF-FSFFP----KVSNFVRASSGIPNLVACSPTEIIIPRVNNAGLRIEEIVDA 77

Query: 1004 QKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISEL 825
             K GK RLDSWISSRI G+SRARVQSSIR GLVTVN R++DKVS  V++GD++ CTISEL
Sbjct: 78   AK-GKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDEVNCTISEL 136

Query: 824  QPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPD 645
            QPL+AE EDI LDI YED H+LVVNKP+ MVVHPAPGN  GTLVN ILHHC LP V   +
Sbjct: 137  QPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSN 196

Query: 644  DNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSF--SVRPGIVHRLDKGTSGLIVVAKDEL 471
                                 D    T   SS+  SVRPGIVHRLDKGT+GL+VVAKDE 
Sbjct: 197  SE--------EDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEH 248

Query: 470  SHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGC-SGRAR 294
            SH+HL+EQFK  TI+RVY+SLT GVPSP  GRI++PIGRD +NRIRM AI GG   GRAR
Sbjct: 249  SHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRAR 308

Query: 293  HAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLL 114
            HAASRYKV+E FA GGSALVEWRLETGRTHQIR HAKY+G+PLLGDEVYGGT+ MALSLL
Sbjct: 309  HAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLL 368

Query: 113  QPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            Q R  R+   ++++L+SR+ RPCLHA+VLGF HP TG
Sbjct: 369  QKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTG 405


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  457 bits (1175), Expect = e-126
 Identities = 244/405 (60%), Positives = 298/405 (73%), Gaps = 7/405 (1%)
 Frame = -1

Query: 1196 MITLHSPSHSLKLNPFAPIPAIRIRVSRFVRASAST--GDTDEQNGP--ISCRRLNYEGV 1029
            M+ L++ S SL   P  P P    RVS F+  + +   GD+D  + P  I  RR NY GV
Sbjct: 1    MLALNTTSFSLL--PQNPKPFSLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGV 58

Query: 1028 QLEEVVDQQKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDK 849
            +LEE VD  K GK RLDSW+SSRI G+SRARVQSSIR GLV+VN R+ DKVS  V+ GDK
Sbjct: 59   KLEETVDG-KTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDK 117

Query: 848  IKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCK 669
            + CTI++L+PLRAEPEDI LDI +ED+H+LVVNKP+ MVVHPAPGNA GTLV+ ILHHC 
Sbjct: 118  VDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCS 177

Query: 668  LPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMN--SSFSVRPGIVHRLDKGTSGL 495
            LPT++   +  L                    ++ + +     SVRPGIVHRLDKGTSGL
Sbjct: 178  LPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGL 237

Query: 494  IVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITG 315
            +VVAK+E S + L+EQFK  TI+RVY+S+T GVP+  +GR+ +PIGRD NNRIRM AI G
Sbjct: 238  LVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPG 297

Query: 314  -GCSGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGT 138
               SG++RHA SRYKV+E  A GGSALVEWRLETGRTHQIR HAKYLGIPL+GDEVYGGT
Sbjct: 298  TPKSGKSRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGT 357

Query: 137  RDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            ++MALSLLQP+TP  +H +L  LVS+I RPCLHA+ LGF+HP+TG
Sbjct: 358  KNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTG 402


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  456 bits (1173), Expect = e-126
 Identities = 241/400 (60%), Positives = 294/400 (73%), Gaps = 7/400 (1%)
 Frame = -1

Query: 1181 SPSHSLKLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQ 1002
            +PS SL    F    + + R +    AS S GD+D    P    +LN+ GV+LEE VD +
Sbjct: 25   APSPSL----FLSATSYKFRSATASAASGSAGDSDSDGEP----KLNFSGVRLEEAVDSR 76

Query: 1001 -KPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISEL 825
               GK RLD+WISSRI GISRARVQSSI+ GLV VN R++DKVSF V++GD+IKCTI+EL
Sbjct: 77   IGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAEL 136

Query: 824  QPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPD 645
            Q LRA P++I LDI YED+H+LV+NKP+ MVVHPAPGN +GTLVN ILHHC LP V    
Sbjct: 137  QNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSK 196

Query: 644  DNFLXXXXXXXXXXXXXXXSPDQISFTEMNS-----SFSVRPGIVHRLDKGTSGLIVVAK 480
            D  L                    S   +NS     S S+RPGIVHRLDKGTSGL+VVAK
Sbjct: 197  DEALSDTEDSDDEFNSYISLAS--SCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAK 254

Query: 479  DELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGC-SG 303
            DE SH  LSEQFK RTI+R+Y+SLT GVP+P +GR++VP+GRD NNRIRMTA+TG   S 
Sbjct: 255  DEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSK 314

Query: 302  RARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMAL 123
            +AR+AASRYKV+E+ A G  +LVEW+LETGRTHQIR HAKYLG+PLLGDE+YGGT+ M L
Sbjct: 315  KARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVL 374

Query: 122  SLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            SLL+PRTP + HS++V +VSR+ RPCLHA  LGF+HP+TG
Sbjct: 375  SLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTG 414


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  456 bits (1172), Expect = e-125
 Identities = 239/366 (65%), Positives = 280/366 (76%)
 Frame = -1

Query: 1100 SASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQKPGKSRLDSWISSRILGISRARVQSSI 921
            S+ST + +    P   +R+NY GV+LEE VD  K GKSRLDSWISSRI GISRARVQSSI
Sbjct: 60   SSSTREPNSNQNP--GQRINYSGVKLEESVDS-KSGKSRLDSWISSRISGISRARVQSSI 116

Query: 920  RCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPS 741
            + GLV+VN ++IDKVS  V+AGDK+ C ISELQPLRAEPE+I LDI YED+++LVVNKP+
Sbjct: 117  KSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPA 176

Query: 740  DMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTE 561
             MVVHPAPGNA GTLVN ILHHC LPTV+  +                     D      
Sbjct: 177  HMVVHPAPGNATGTLVNGILHHCSLPTVSSQE----------VLSGAEDVSDDDDEGLCS 226

Query: 560  MNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTS 381
             + + SVRPGIVHRLDKGTSGL+VVAKDE SH+HLSEQFK  TI+RVY+SLT GVP+P +
Sbjct: 227  SSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMA 286

Query: 380  GRIQVPIGRDLNNRIRMTAITGGCSGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQ 201
            GRI VPIGRD++NRIRM AI     G+ARHAASRYKV+E+ A GGSALVEWRLETGRTHQ
Sbjct: 287  GRIDVPIGRDVSNRIRMAAIVEPNRGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 346

Query: 200  IRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGF 21
            IR HAKY+GIPLLGDEVYGGT++MALSLL+ RT  + H QL   +S ++RPCLHA+ LGF
Sbjct: 347  IRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGF 406

Query: 20   KHPYTG 3
             HP TG
Sbjct: 407  THPCTG 412


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  454 bits (1169), Expect = e-125
 Identities = 246/384 (64%), Positives = 284/384 (73%), Gaps = 1/384 (0%)
 Frame = -1

Query: 1154 PFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQKPGKSRLDS 975
            PF     +R R S     S+S+G  + +  PI+    NY GVQLEE VD  K GK RLD+
Sbjct: 28   PFGVFKILRARCS-----SSSSGGNNRE--PIA----NYAGVQLEETVDT-KAGKLRLDA 75

Query: 974  WISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDI 795
            WISSRI GISRARVQSSIR GLV++N +++ KVS  V+ GD + CTISELQPLRAE EDI
Sbjct: 76   WISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDI 135

Query: 794  LLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXXXXX 615
             LDI YEDD++LVVNKP+ MVVHPAPGNA GTLVN ILHHC LPT+A  +          
Sbjct: 136  PLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE-------- 187

Query: 614  XXXXXXXXXSPDQISFTEMNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKAR 435
                       D   F+   S  S+RPGIVHRLDKGTSGL+VVAKDE SH+HLSEQFK  
Sbjct: 188  --AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH 245

Query: 434  TIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGCS-GRARHAASRYKVMEVF 258
            TI+RVYISLT GVPS +SGRI+VPI RD NNRIRM AI G    G+ARHAASRYKV+E+ 
Sbjct: 246  TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL 305

Query: 257  ADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQL 78
            A GGSALVEWRLETGRTHQIR HAKY+GIPLLGDEVYGGT++MA SLLQPRT    H ++
Sbjct: 306  AGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKV 365

Query: 77   VDLVSRIQRPCLHAMVLGFKHPYT 6
            + LVS +QRPCLHA+ LGF HP+T
Sbjct: 366  LKLVSGLQRPCLHAVALGFTHPHT 389


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  453 bits (1166), Expect = e-125
 Identities = 235/371 (63%), Positives = 278/371 (74%), Gaps = 3/371 (0%)
 Frame = -1

Query: 1106 RASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQ-KPGKSRLDSWISSRILGISRARVQ 930
            RA +   D    NG     + NY GV+LEE+VD + K GK RLD+WISSRI GISRARVQ
Sbjct: 45   RAVSGLADDSNSNGE---PKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQ 101

Query: 929  SSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVN 750
            SSI+ GLV VN R++DKVSF VRAGD+IKCTI+ELQ LRA PE+I LDI YED+HLLV+N
Sbjct: 102  SSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPENIPLDIVYEDEHLLVIN 161

Query: 749  KPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFL-XXXXXXXXXXXXXXXSPDQI 573
            KP+ MVVHPAPGN +GTLVN ILHHC LP V    D  L                +P   
Sbjct: 162  KPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDELNGFTSQAPSCE 221

Query: 572  SFTEMNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVP 393
                  S  S+RPGIVHRLDKGTSGL+VVAKDE SH  LSEQFK RTI+RVYISLT GVP
Sbjct: 222  GLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYISLTAGVP 281

Query: 392  SPTSGRIQVPIGRDLNNRIRMTAITGG-CSGRARHAASRYKVMEVFADGGSALVEWRLET 216
            +P +GR++VP+GRD NNR+RMTA+ G   S +ARHAASRYKV+E+ A G  ALVEW+LET
Sbjct: 282  TPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAASRYKVIEILAGGSCALVEWKLET 341

Query: 215  GRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHA 36
            GRTHQIR HA+YLG+PLLGDEVYGGT++M LSLL+PRT  + H ++  +VS + RPCLHA
Sbjct: 342  GRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRTTPSLHGEMTKMVSELDRPCLHA 401

Query: 35   MVLGFKHPYTG 3
            M LGF+HP+TG
Sbjct: 402  MTLGFQHPHTG 412


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  451 bits (1161), Expect = e-124
 Identities = 252/414 (60%), Positives = 289/414 (69%), Gaps = 40/414 (9%)
 Frame = -1

Query: 1124 RVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEE-VVD-QQKPGKSRLDSWISSRILG 951
            RV R +R  +++  TDE    +S RR NY GV+LEE VVD     GK RLDSWISSRI+G
Sbjct: 161  RVFRILRDCSNS--TDEPLVSVSSRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIG 218

Query: 950  ISRARVQSSIRCGLVTVNERIIDK---------------------------VSFAVRAGD 852
            ISRARVQSSIR GLV+VN+RI+DK                           VS  +RAGD
Sbjct: 219  ISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYSEQVSHVIRAGD 278

Query: 851  KIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHC 672
            K+ CTISELQPLRAEPEDI LDI YED+H          VVHPAPGNA+GTLVN ILHHC
Sbjct: 279  KVNCTISELQPLRAEPEDIPLDIVYEDEH----------VVHPAPGNASGTLVNGILHHC 328

Query: 671  KLPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMNS----------SFSVRPGIVH 522
             LPTVALP+ +                   D I   E NS            ++RPGIVH
Sbjct: 329  SLPTVALPNRD----------------SEEDDILDDEFNSFAAGQNCGTCETNIRPGIVH 372

Query: 521  RLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNN 342
            RLDKGTSGL+VVAKDE SH+HLSEQFK  +I RVYISLT GVP+P SGR+++P+GRD NN
Sbjct: 373  RLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNN 432

Query: 341  RIRMTAITGGC-SGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPL 165
            RIRMTA+ G   SG+ARHAASRYKV+E+ A GGSALVEWRLETGRTHQIR HAKYLGIPL
Sbjct: 433  RIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPL 492

Query: 164  LGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            LGDEVYGGT++MALSLL+PR P ++H QL  LVSR+ RPCLHA+ LGF HP TG
Sbjct: 493  LGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTG 546


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  450 bits (1158), Expect = e-124
 Identities = 234/397 (58%), Positives = 284/397 (71%), Gaps = 3/397 (0%)
 Frame = -1

Query: 1184 HSPSHSLKLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQ 1005
            HS   +   + F    + + R +     S  TGD+D        R+LN+ G++LEE VD 
Sbjct: 19   HSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGE----RKLNFSGLRLEEAVDS 74

Query: 1004 Q-KPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISE 828
            +    K RLDSWISSRI GISRARVQSSI+ GLV VN R++DK SF V+AGD+IKCTI+E
Sbjct: 75   RIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAE 134

Query: 827  LQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALP 648
            LQ LRA PE+I LDI YED+H+LV+NKP+ MVVHPAPGN +GTLVN ILHHC LP V   
Sbjct: 135  LQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFS 194

Query: 647  DDNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSF-SVRPGIVHRLDKGTSGLIVVAKDEL 471
             +  L                      +    S  S+RPGIVHRLDKGTSGL+VVAKDE 
Sbjct: 195  KEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEH 254

Query: 470  SHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGCSGR-AR 294
            SH  LSEQFK RTI+RVY+SLT GVP P SGR+ VP+GRDLNNR+RMTA+ G  + R AR
Sbjct: 255  SHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKAR 314

Query: 293  HAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLL 114
            HAASRYKV+E+ A G  +LVEW+LETGRTHQIR HAKYLG+PLLGDEVYGGT+ M LSLL
Sbjct: 315  HAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLL 374

Query: 113  QPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            +PR+P + H ++V +VS + RPCLHA+ LGF+HP+TG
Sbjct: 375  RPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTG 411


>gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao]
          Length = 409

 Score =  449 bits (1156), Expect = e-124
 Identities = 245/387 (63%), Positives = 280/387 (72%), Gaps = 1/387 (0%)
 Frame = -1

Query: 1163 KLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQQKPGKSR 984
            KL PF     +R       RA  S+G   +   PI   R +Y GVQLEE VD  K GK R
Sbjct: 18   KLLPFTLSGILR------ARARPSSGCAAKTQEPI---RTSYTGVQLEETVDGTKQGKLR 68

Query: 983  LDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEP 804
            LDSWISSRI GISRARVQSSI+ GLVTVN R++DKVS  +R GDK+ C ISELQPLRAEP
Sbjct: 69   LDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLRAEP 128

Query: 803  EDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXX 624
            EDI LDI YEDDH+LVVNKP  MVVHPAPGNA GTLVN ILHHC LPTVAL +   L   
Sbjct: 129  EDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVL--- 185

Query: 623  XXXXXXXXXXXXSPDQISFTEMNSSFSVRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQF 444
                          D+      +++ SVRPGIVHRLDKGTSGL+VVAK           F
Sbjct: 186  -----SDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAK-----------F 229

Query: 443  KARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITG-GCSGRARHAASRYKVM 267
            K  TIQRVYISLT GVPSP++GR+ + IGRD NNR+RM A+ G    GRARHAASRYKV+
Sbjct: 230  KQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVI 289

Query: 266  EVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYH 87
            EV A GGSAL++WRLETGRTHQIR HAKY+GIPLLGDEVYGGT+ MALSLL+PRTP  Y+
Sbjct: 290  EVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYN 349

Query: 86   SQLVDLVSRIQRPCLHAMVLGFKHPYT 6
             QL  LVSR++RP LHA+VLGF+HP++
Sbjct: 350  DQLSRLVSRLERPYLHALVLGFEHPHS 376


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 399

 Score =  449 bits (1155), Expect = e-123
 Identities = 238/349 (68%), Positives = 270/349 (77%), Gaps = 4/349 (1%)
 Frame = -1

Query: 1058 SCRR-LNYEGVQLEEVVD--QQKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERI 888
            SC+   NY G++LEE V     K  K RLDSWISSRI GISRARVQSSI+ GLV+VN R+
Sbjct: 46   SCQNHTNYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRV 105

Query: 887  IDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNA 708
            +DKVS  V+ GDK+ CTISELQPLRAEPED+ LDI YED+HLLVVNKP  MVVHPAPGN 
Sbjct: 106  VDKVSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNP 165

Query: 707  NGTLVNAILHHCKLPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSFSVRPGI 528
             GTLVN ILHHC LPTVA+     L                 D+ S++    S S+RPGI
Sbjct: 166  TGTLVNGILHHCNLPTVAISSQEVL--------SDAEDRSDDDERSYSSSCES-SIRPGI 216

Query: 527  VHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDL 348
            VHRLDKGTSGL+VVAKDE +H+HLSEQFK  TIQRVYISLT GVPS  +GRI +PIGRD+
Sbjct: 217  VHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDV 276

Query: 347  NNRIRMTAITGGC-SGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGI 171
            NNRIRMTAI G    GRARHAASR+KV+E  A GGSALVEWRLETGRTHQIR HAKY+GI
Sbjct: 277  NNRIRMTAIPGPIKQGRARHAASRFKVVETLAGGGSALVEWRLETGRTHQIRAHAKYIGI 336

Query: 170  PLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLG 24
            PLLGDEVYGGTR MALSLL+PR P T HS+L  L+S+++RPCLHA+ LG
Sbjct: 337  PLLGDEVYGGTRSMALSLLRPRIPSTCHSELSLLLSKLERPCLHALALG 385


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  447 bits (1149), Expect = e-123
 Identities = 250/420 (59%), Positives = 288/420 (68%), Gaps = 17/420 (4%)
 Frame = -1

Query: 1211 CPGRKMITLHSPSHSLKLNPFAPIPAIRIRV-SRFVRASAS-----TGDTDEQNGPISCR 1050
            C  R +    SP H          P  R R+ S  +R S++     + D DE +   S R
Sbjct: 5    CSARTIQASPSPIHFF-------FPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSER 57

Query: 1049 RLNYEGVQLEEVVDQQKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSF 870
              NY G +LEE VD   PGK RLDSWIS RI GISRARVQSSIR GLV+VN R+IDKVS 
Sbjct: 58   IANYAGTRLEETVDVN-PGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSH 116

Query: 869  AVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVN 690
             V+AGD I CTISELQPLRAEPEDI LDI YED+H+LVVNKP+ MVVHPAPGNA GTLVN
Sbjct: 117  NVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN 176

Query: 689  AILHHCKLPTVA-----------LPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSFS 543
            AIL+HC LP VA           + DD F                    I      S   
Sbjct: 177  AILNHCSLPMVATSTGENESDSDVSDDEF------------------SSIGVFSRVSEAP 218

Query: 542  VRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVP 363
            +RPGIVHRLDKGTSGL+VVAKDE SH+HLS QFK  +I+RVYISLT GVP  T+GRI++P
Sbjct: 219  IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMP 278

Query: 362  IGRDLNNRIRMTAITGGCSGRARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAK 183
            I RD NNRIRMTAI G  +  A++AASRY VME+ A GGS+LVEWRLETGRTHQIR HAK
Sbjct: 279  ICRDPNNRIRMTAIDGTNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAK 338

Query: 182  YLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            Y+GIPLLGDEVYGGT+ MA+SLL+ R     H QL+ LVS ++RPCLHA+ LGF HP+TG
Sbjct: 339  YMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTG 398


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  444 bits (1142), Expect = e-122
 Identities = 237/378 (62%), Positives = 276/378 (73%), Gaps = 6/378 (1%)
 Frame = -1

Query: 1118 SRFVRASASTGDTDEQNGPI-SCRRLNYEGVQLEEVVDQQKPGKSRLDSWISSRILG--I 948
            +RF+RAS +   + + N    S RR  + G +LEE V   + G+SR+D+WISSR+ G  +
Sbjct: 27   ARFLRASQARCISSDANAEAASSRRGGHGGTRLEEAVPAGE-GRSRIDAWISSRLGGGGV 85

Query: 947  SRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDIKYEDD 768
            SRARVQ+SIR GLV VN R + KVS  V+ GD + CT+SELQPLRAEPEDI LDI YED 
Sbjct: 86   SRARVQASIRAGLVAVNGRPVSKVSHMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQ 145

Query: 767  HLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXXXXXXXXXXXXXX 588
            HLLVVNKP+ MVVHPAPGNANGTLVNAILHHCK+ T      N                 
Sbjct: 146  HLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSTDDECPDSSDDDIDVF 205

Query: 587  SPDQISFTEMNSSFS---VRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVY 417
              DQ +  E++S      VRPGIVHRLDKGTSGL+VVAKDE SH+ L+EQFK  TI+RVY
Sbjct: 206  HVDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVY 265

Query: 416  ISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGCSGRARHAASRYKVMEVFADGGSAL 237
            ISLT G P+P SGRI+VPI RD NNRIRM A  G     ARHAASRYKV EVFA GGSAL
Sbjct: 266  ISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAASRYKVREVFAGGGSAL 325

Query: 236  VEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRI 57
            VEW+LETGRTHQIR HAKYLGIPLLGDE YGGT+ MALSLL+PRT   YH  L +L+++I
Sbjct: 326  VEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTSSRYHCDLSNLIAKI 385

Query: 56   QRPCLHAMVLGFKHPYTG 3
             RPCLHA +LGFKHP++G
Sbjct: 386  DRPCLHAALLGFKHPHSG 403


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  444 bits (1141), Expect = e-122
 Identities = 239/383 (62%), Positives = 277/383 (72%), Gaps = 7/383 (1%)
 Frame = -1

Query: 1130 RIRVSRFVRASASTGDTDEQNGPISC--RRLNYEGVQLEEVVDQQKPGKSRLDSWISSRI 957
            R R SR V AS +     + N       RR  + G +LEE V   + G+SR+D+WIS+R+
Sbjct: 24   RRRSSRCVGASHARCLAADANAEAVAPSRRGGHGGTRLEEAVPAGE-GRSRIDAWISARL 82

Query: 956  LG--ISRARVQSSIRCGLVTVNERIIDKVSFAVRAGDKIKCTISELQPLRAEPEDILLDI 783
             G  +SRAR+Q+SIR GLV VN R + KVS  V+ GD + CT+SELQPLRAEPEDI LDI
Sbjct: 83   GGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVSELQPLRAEPEDIPLDI 142

Query: 782  KYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAILHHCKLPTVALPDDNFLXXXXXXXXXX 603
             YEDDHLLVVNKP+ MVVHPAPGNANGTLVNAILHHCK+ T      N +          
Sbjct: 143  VYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPDSSDD 202

Query: 602  XXXXXSPDQISFTEMNSSFS---VRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKART 432
                   DQ +  E++S      VRPGIVHRLDKGTSGL+VVAKDE SH+ L+EQFK  T
Sbjct: 203  DIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHT 262

Query: 431  IQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTAITGGCSGRARHAASRYKVMEVFAD 252
            I+RVYISLT G P+P SGRI+VPI RD NNRIRM A  G     ARHAASRYKV EVFA 
Sbjct: 263  IRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAASRYKVREVFAG 322

Query: 251  GGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVD 72
            GGSALVEWRLETGRTHQIR HAKYLGIPLLGDE YGGT+ MALSLL+PRTP  YH  L +
Sbjct: 323  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSN 382

Query: 71   LVSRIQRPCLHAMVLGFKHPYTG 3
            ++S+I RPCLHA +LGFKHP++G
Sbjct: 383  MISKIDRPCLHAALLGFKHPHSG 405


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  443 bits (1139), Expect = e-122
 Identities = 250/421 (59%), Positives = 288/421 (68%), Gaps = 18/421 (4%)
 Frame = -1

Query: 1211 CPGRKMITLHSPSHSLKLNPFAPIPAIRIRV-SRFVRASAS-----TGDTDEQNGPISCR 1050
            C  R +    SP H          P  R R+ S  +R S++     + D DE +   S R
Sbjct: 5    CSARTIQASPSPIHFF-------FPPNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSER 57

Query: 1049 RLNYEGVQLEEVVDQQKPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDKVSF 870
              NY G +LEE VD   PGK RLDSWIS RI GISRARVQSSIR GLV+VN R+IDKVS 
Sbjct: 58   IANYAGTRLEETVDVN-PGKVRLDSWISCRINGISRARVQSSIRAGLVSVNGRVIDKVSH 116

Query: 869  AVRAGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVN 690
             V+AGD I CTISELQPLRAEPEDI LDI YED+H+LVVNKP+ MVVHPAPGNA GTLVN
Sbjct: 117  NVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN 176

Query: 689  AILHHCKLPTVA-----------LPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSFS 543
            AIL+HC LP VA           + DD F                    I      S   
Sbjct: 177  AILNHCSLPMVATSTGENESDSDVSDDEF------------------SSIGVFSRVSEAP 218

Query: 542  VRPGIVHRLDKGTSGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVP 363
            +RPGIVHRLDKGTSGL+VVAKDE SH+HLS QFK  +I+RVYISLT GVP  T+GRI++P
Sbjct: 219  IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMP 278

Query: 362  IGRDLNNRIRMTAITGGCSG-RARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHA 186
            I RD NNRIRMTAI G  +   A++AASRY VME+ A GGS+LVEWRLETGRTHQIR HA
Sbjct: 279  ICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHA 338

Query: 185  KYLGIPLLGDEVYGGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYT 6
            KY+GIPLLGDEVYGGT+ MA+SLL+ R     H QL+ LVS ++RPCLHA+ LGF HP+T
Sbjct: 339  KYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHT 398

Query: 5    G 3
            G
Sbjct: 399  G 399


>gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  442 bits (1136), Expect = e-121
 Identities = 234/408 (57%), Positives = 284/408 (69%), Gaps = 14/408 (3%)
 Frame = -1

Query: 1184 HSPSHSLKLNPFAPIPAIRIRVSRFVRASASTGDTDEQNGPISCRRLNYEGVQLEEVVDQ 1005
            HS   +   + F    + + R +     S  TGD+D        R+LN+ G++LEE VD 
Sbjct: 19   HSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGE----RKLNFSGLRLEEAVDS 74

Query: 1004 Q-KPGKSRLDSWISSRILGISRARVQSSIRCGLVTVNERIIDK-----------VSFAVR 861
            +    K RLDSWISSRI GISRARVQSSI+ GLV VN R++DK            SF V+
Sbjct: 75   RIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNVK 134

Query: 860  AGDKIKCTISELQPLRAEPEDILLDIKYEDDHLLVVNKPSDMVVHPAPGNANGTLVNAIL 681
            AGD+IKCTI+ELQ LRA PE+I LDI YED+H+LV+NKP+ MVVHPAPGN +GTLVN IL
Sbjct: 135  AGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGIL 194

Query: 680  HHCKLPTVALPDDNFLXXXXXXXXXXXXXXXSPDQISFTEMNSSFS-VRPGIVHRLDKGT 504
            HHC LP V    +  L                      +    S S +RPGIVHRLDKGT
Sbjct: 195  HHCNLPNVEFSKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGT 254

Query: 503  SGLIVVAKDELSHSHLSEQFKARTIQRVYISLTVGVPSPTSGRIQVPIGRDLNNRIRMTA 324
            SGL+VVAKDE SH  LSEQFK RTI+RVY+SLT GVP P SGR+ VP+GRDLNNR+RMTA
Sbjct: 255  SGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTA 314

Query: 323  ITGGCSGR-ARHAASRYKVMEVFADGGSALVEWRLETGRTHQIRVHAKYLGIPLLGDEVY 147
            + G  + R ARHAASRYKV+E+ A G  +LVEW+LETGRTHQIR HAKYLG+PLLGDEVY
Sbjct: 315  VAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVY 374

Query: 146  GGTRDMALSLLQPRTPRTYHSQLVDLVSRIQRPCLHAMVLGFKHPYTG 3
            GGT+ M LSLL+PR+P + H ++V +VS + RPCLHA+ LGF+HP+TG
Sbjct: 375  GGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTG 422