BLASTX nr result
ID: Rheum21_contig00020385
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00020385
(912 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006360680.1| PREDICTED: pentatricopeptide repeat-containi... 91 8e-16
gb|EXC12608.1| hypothetical protein L484_012985 [Morus notabilis] 89 3e-15
ref|XP_004240287.1| PREDICTED: pentatricopeptide repeat-containi... 87 7e-15
ref|XP_002530609.1| pentatricopeptide repeat-containing protein,... 82 3e-13
ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containi... 79 2e-12
emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera] 79 2e-12
ref|XP_004289369.1| PREDICTED: pentatricopeptide repeat-containi... 77 9e-12
ref|XP_006466421.1| PREDICTED: pentatricopeptide repeat-containi... 76 2e-11
ref|XP_006426143.1| hypothetical protein CICLE_v10025041mg [Citr... 76 2e-11
gb|EOX91771.1| Tetratricopeptide repeat (TPR)-like superfamily p... 76 2e-11
gb|EMJ09377.1| hypothetical protein PRUPE_ppa017277mg, partial [... 76 2e-11
ref|XP_006360668.1| PREDICTED: pentatricopeptide repeat-containi... 75 3e-11
gb|ESW17634.1| hypothetical protein PHAVU_007G256100g [Phaseolus... 74 8e-11
ref|NP_190543.1| pentatricopeptide repeat-containing protein [Ar... 72 3e-10
ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containi... 72 4e-10
ref|XP_006404106.1| hypothetical protein EUTSA_v10010148mg [Eutr... 71 5e-10
ref|XP_002875993.1| pentatricopeptide repeat-containing protein ... 71 5e-10
ref|XP_006292792.1| hypothetical protein CARUB_v10019043mg [Caps... 70 1e-09
ref|XP_006857044.1| hypothetical protein AMTR_s00065p00033910 [A... 65 5e-08
ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containi... 65 5e-08
>ref|XP_006360680.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Solanum tuberosum]
Length = 723
Score = 90.5 bits (223), Expect = 8e-16
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+E+ +V LLSAC+KLG+VG+AC+V D+MP R++A+WN +I GCA +A++LF
Sbjct: 108 IETPDVYSWTTLLSACTKLGEVGYACKVFDEMPQRNLAVWNAMITGCAESGYHGIALNLF 167
Query: 392 RNMNAMGVGYDNYTLASVLS 451
+ M+ +GV YDNY ASVLS
Sbjct: 168 QRMHFLGVRYDNYAFASVLS 187
>gb|EXC12608.1| hypothetical protein L484_012985 [Morus notabilis]
Length = 737
Score = 88.6 bits (218), Expect = 3e-15
Identities = 46/80 (57%), Positives = 56/80 (70%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+ES +V LLSAC KLGDV +A QV D MPSRDVA+WN +I G A + +A+ F
Sbjct: 118 IESPDVYSWTTLLSACVKLGDVEYAQQVFDGMPSRDVAIWNAMITGFADNGHDEIAMRYF 177
Query: 392 RNMNAMGVGYDNYTLASVLS 451
R M+ MGVG DNY+LASVLS
Sbjct: 178 REMHNMGVGRDNYSLASVLS 197
>ref|XP_004240287.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Solanum lycopersicum]
Length = 720
Score = 87.4 bits (215), Expect = 7e-15
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+ES +V LLSA +KLG+VG+AC+V D+MP R++A+WN +I GCA +A+D F
Sbjct: 105 IESPDVYSWTTLLSASTKLGEVGYACKVFDEMPHRNLAVWNAMITGCAESGYHGIALDFF 164
Query: 392 RNMNAMGVGYDNYTLASVLS 451
+ M+ +GV YDNY AS+LS
Sbjct: 165 QRMHFLGVRYDNYAFASILS 184
>ref|XP_002530609.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529857|gb|EEF31789.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 684
Score = 82.0 bits (201), Expect = 3e-13
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +2
Query: 215 ESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLFR 394
E+ +V L+SAC+KLG V +AC + D MP RDV +WN +I GC N+ + ++ FR
Sbjct: 128 ENPDVYSYATLVSACAKLGHVDYACVLFDVMPQRDVVVWNALITGCMESGNEEIGLNYFR 187
Query: 395 NMNAMGVGYDNYTLASVLS 451
+M GV +DNY+LASVLS
Sbjct: 188 DMCRSGVRHDNYSLASVLS 206
>ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 79.0 bits (193), Expect = 2e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+E+ +V LLSAC+KLG +G+AC + ++ P +WN +I GCA + +A++LF
Sbjct: 114 IENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLF 173
Query: 392 RNMNAMGVGYDNYTLASVLS 451
R M+ +GV +D YT ASVLS
Sbjct: 174 REMHQLGVRHDKYTFASVLS 193
>emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera]
Length = 690
Score = 79.0 bits (193), Expect = 2e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+E+ +V LLSAC+KLG +G+AC + ++ P +WN +I GCA + +A++LF
Sbjct: 120 IENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLF 179
Query: 392 RNMNAMGVGYDNYTLASVLS 451
R M+ +GV +D YT ASVLS
Sbjct: 180 REMHQLGVRHDKYTFASVLS 199
>ref|XP_004289369.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Fragaria vesca subsp. vesca]
Length = 733
Score = 77.0 bits (188), Expect = 9e-12
Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +2
Query: 245 LLSACSKLGDVGFACQVIDKMPSR-DVALWNVVIAGCAGYVNQHVAIDLFRNMNAMGVGY 421
LLSAC+KLG+V +AC+V DK+P + +VA+WN +I GCA + VA LF M MGV
Sbjct: 128 LLSACAKLGEVEYACKVFDKIPEKSNVAIWNAMITGCAENGAEEVAFGLFCEMRRMGVRC 187
Query: 422 DNYTLASVLS 451
DNY+ ASVLS
Sbjct: 188 DNYSAASVLS 197
>ref|XP_006466421.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Citrus sinensis]
gi|568848690|ref|XP_006478131.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g49740-like [Citrus sinensis]
Length = 733
Score = 75.9 bits (185), Expect = 2e-11
Identities = 35/80 (43%), Positives = 52/80 (65%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+++ +V LSAC+K+G V +AC+V DKMP RD+ ++N +I GC + + I LF
Sbjct: 118 IQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLF 177
Query: 392 RNMNAMGVGYDNYTLASVLS 451
R M+ + V DNY+ ASVLS
Sbjct: 178 REMHKLDVRRDNYSFASVLS 197
>ref|XP_006426143.1| hypothetical protein CICLE_v10025041mg [Citrus clementina]
gi|557528133|gb|ESR39383.1| hypothetical protein
CICLE_v10025041mg [Citrus clementina]
Length = 696
Score = 75.9 bits (185), Expect = 2e-11
Identities = 35/80 (43%), Positives = 52/80 (65%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+++ +V LSAC+K+G V +AC+V DKMP RD+ ++N +I GC + + I LF
Sbjct: 118 IQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLF 177
Query: 392 RNMNAMGVGYDNYTLASVLS 451
R M+ + V DNY+ ASVLS
Sbjct: 178 REMHKLDVRRDNYSFASVLS 197
>gb|EOX91771.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
isoform 1 [Theobroma cacao] gi|508699876|gb|EOX91772.1|
Tetratricopeptide repeat (TPR)-like superfamily protein,
putative isoform 1 [Theobroma cacao]
Length = 738
Score = 75.9 bits (185), Expect = 2e-11
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
++ +V LLS+C+KLG++ +AC+V DKMP ++VA+WN +I GC + LF
Sbjct: 124 IKDPDVYSWTTLLSSCTKLGEIPYACEVFDKMPKKEVAVWNAMITGCVDNGYEDFGFGLF 183
Query: 392 RNMNAMGVGYDNYTLASVLS 451
+ M+ +G +D Y+ ASVLS
Sbjct: 184 KEMHILGFKHDYYSFASVLS 203
>gb|EMJ09377.1| hypothetical protein PRUPE_ppa017277mg, partial [Prunus persica]
Length = 634
Score = 75.9 bits (185), Expect = 2e-11
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPS-RDVALWNVVIAGCAGYVNQHVAIDL 388
+E+ +V LLSAC+KLG V +A ++ D MP R+V +WN +I GCA + VAI L
Sbjct: 118 IENPDVYSWTTLLSACTKLGHVDYAYKLFDTMPEKRNVTIWNAMITGCAENGCEEVAIGL 177
Query: 389 FRNMNAMGVGYDNYTLASVLS 451
F M+ MGV +DNY+ ASVLS
Sbjct: 178 FGEMHRMGVMHDNYSFASVLS 198
>ref|XP_006360668.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Solanum tuberosum]
Length = 269
Score = 75.1 bits (183), Expect = 3e-11
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = +2
Query: 266 LGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLFRNMNAMGVGYDNYTLASV 445
+G+VG+AC+V D+MP R++A+WN +I GCA +A++LF+ M+ +GV YDNY ASV
Sbjct: 1 MGEVGYACKVFDEMPQRNLAVWNAMITGCAESGYHGIALNLFQRMHFLGVRYDNYAFASV 60
Query: 446 LS 451
LS
Sbjct: 61 LS 62
>gb|ESW17634.1| hypothetical protein PHAVU_007G256100g [Phaseolus vulgaris]
Length = 714
Score = 73.9 bits (180), Expect = 8e-11
Identities = 41/93 (44%), Positives = 56/93 (60%)
Frame = +2
Query: 173 QQNTSKPRAKEEMVESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGC 352
Q S RA E + +V LLSAC+KL V A Q+ D++P R VA+WN VI GC
Sbjct: 87 QDLASVERAFTE-IRCPDVYSWTTLLSACAKLAPVTHALQLFDEIPKRHVAVWNAVITGC 145
Query: 353 AGYVNQHVAIDLFRNMNAMGVGYDNYTLASVLS 451
A ++ +A +LFR+M MG+ D YT A++LS
Sbjct: 146 ADKGHEGLAFNLFRDMQKMGIKADKYTFATMLS 178
>ref|NP_190543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183390|sp|Q9M2Y4.1|PP276_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g49740 gi|6723419|emb|CAB66912.1| putative protein
[Arabidopsis thaliana] gi|332645063|gb|AEE78584.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 737
Score = 72.0 bits (175), Expect = 3e-10
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +2
Query: 179 NTSKPRAKEEMVESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRD-VALWNVVIAGCA 355
N + + K + ++ +V LLSA KLGD+ +A +V DKMP RD VA+WN +I GC
Sbjct: 107 NLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIWNAMITGCK 166
Query: 356 GYVNQHVAIDLFRNMNAMGVGYDNYTLASVLS 451
+++LFR M+ +GV +D + A++LS
Sbjct: 167 ESGYHETSVELFREMHKLGVRHDKFGFATILS 198
>ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like isoform X1 [Glycine max]
Length = 722
Score = 71.6 bits (174), Expect = 4e-10
Identities = 36/69 (52%), Positives = 45/69 (65%)
Frame = +2
Query: 245 LLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLFRNMNAMGVGYD 424
LLSAC+KL V A +V D +P +A+WN VI GCA N+ A LFR+MN MGV D
Sbjct: 118 LLSACAKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKAD 177
Query: 425 NYTLASVLS 451
YT A++LS
Sbjct: 178 KYTFATMLS 186
>ref|XP_006404106.1| hypothetical protein EUTSA_v10010148mg [Eutrema salsugineum]
gi|557105225|gb|ESQ45559.1| hypothetical protein
EUTSA_v10010148mg [Eutrema salsugineum]
Length = 737
Score = 71.2 bits (173), Expect = 5e-10
Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +2
Query: 206 EMVESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRD-VALWNVVIAGCAGYVNQHVAI 382
E ++ +V LLSA KLGD+ FA +V DKMP RD VA+WN +I GC + +I
Sbjct: 116 EEIKEPDVYSWTTLLSASFKLGDIEFAFEVFDKMPERDDVAVWNAMITGCKESGHHGTSI 175
Query: 383 DLFRNMNAMGVGYDNYTLASVLS 451
+LFR M+ +GV +D + ++VLS
Sbjct: 176 ELFREMHKLGVRHDKFGFSTVLS 198
>ref|XP_002875993.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297321831|gb|EFH52252.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 731
Score = 71.2 bits (173), Expect = 5e-10
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +2
Query: 185 SKPRAKEEMVESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRD-VALWNVVIAGCAGY 361
S R EE++E +V LLSA KLGD+ +A +V DKMP RD VA+WN +I GC
Sbjct: 104 SLKRKFEEIIEP-DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAVWNAMITGCKES 162
Query: 362 VNQHVAIDLFRNMNAMGVGYDNYTLASVLS 451
+I+LFR M+ +GV +D + A+VLS
Sbjct: 163 GYHGTSIELFREMHKLGVRHDKFGFATVLS 192
>ref|XP_006292792.1| hypothetical protein CARUB_v10019043mg [Capsella rubella]
gi|482561499|gb|EOA25690.1| hypothetical protein
CARUB_v10019043mg [Capsella rubella]
Length = 737
Score = 69.7 bits (169), Expect = 1e-09
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 194 RAKEEMVESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRD-VALWNVVIAGCAGYVNQ 370
+ K E ++ + LLSAC KLGD+ +A +V DKMP RD VA+WN +I GC
Sbjct: 112 KKKFEEIKEPDDYSWTTLLSACFKLGDIEYAFEVFDKMPERDDVAVWNAMITGCKESGYH 171
Query: 371 HVAIDLFRNMNAMGVGYDNYTLASVLS 451
+I LF+ M+ +GV +D + A+VLS
Sbjct: 172 GTSIKLFQEMHKLGVRHDKFGFATVLS 198
>ref|XP_006857044.1| hypothetical protein AMTR_s00065p00033910 [Amborella trichopoda]
gi|548861127|gb|ERN18511.1| hypothetical protein
AMTR_s00065p00033910 [Amborella trichopoda]
Length = 484
Score = 64.7 bits (156), Expect = 5e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +2
Query: 245 LLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLFRNMNAMGVGYD 424
LLS+ +K G V AC++ D+MP +V WN +I GCA + + ++ FR M + G+ D
Sbjct: 116 LLSSYTKCGMVHEACKIFDRMPETNVVSWNAIINGCAEHGHADTSLQFFREMRSSGISPD 175
Query: 425 NYTLASVLS 451
YT ASVLS
Sbjct: 176 RYTYASVLS 184
>ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Cucumis sativus]
Length = 735
Score = 64.7 bits (156), Expect = 5e-08
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +2
Query: 212 VESGEVIEVQPLLSACSKLGDVGFACQVIDKMPSRDVALWNVVIAGCAGYVNQHVAIDLF 391
+E +V LLSAC+K+G + +A ++ D MP +VA WN +I G A VA++ F
Sbjct: 121 IEKPDVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMNTF 180
Query: 392 RNMNAMGVGYDNYTLASVLS 451
M+ MGV DNY+ A +LS
Sbjct: 181 YEMHKMGVKPDNYSFACILS 200