BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00020034
         (1990 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006483646.1| PREDICTED: uncharacterized protein LOC102624...   433   e-118
ref|XP_006483648.1| PREDICTED: uncharacterized protein LOC102624...   432   e-118
ref|XP_006483647.1| PREDICTED: uncharacterized protein LOC102624...   432   e-118
emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]   428   e-117
ref|XP_006450082.1| hypothetical protein CICLE_v10007345mg [Citr...   427   e-117
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   427   e-116
ref|XP_004291220.1| PREDICTED: DNA topoisomerase 1-like [Fragari...   424   e-116
ref|XP_006382211.1| hypothetical protein POPTR_0006s29400g [Popu...   410   e-112
ref|XP_002334451.1| predicted protein [Populus trichocarpa]           410   e-112
gb|ESW30781.1| hypothetical protein PHAVU_002G181900g [Phaseolus...   408   e-111
gb|EMJ26477.1| hypothetical protein PRUPE_ppa001428mg [Prunus pe...   408   e-111
ref|XP_006412616.1| hypothetical protein EUTSA_v10024242mg [Eutr...   406   e-110
ref|XP_004233765.1| PREDICTED: DNA topoisomerase 1-like [Solanum...   406   e-110
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   404   e-110
ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric...   404   e-110
ref|XP_004498560.1| PREDICTED: DNA topoisomerase 1-like isoform ...   404   e-110
ref|XP_006601080.1| PREDICTED: DNA topoisomerase 3-alpha-like is...   403   e-109
ref|XP_006601079.1| PREDICTED: DNA topoisomerase 3-alpha-like is...   403   e-109
ref|XP_006601078.1| PREDICTED: DNA topoisomerase 3-alpha-like is...   403   e-109
gb|EOY29085.1| DNA topoisomerase isoform 5 [Theobroma cacao]          403   e-109

>ref|XP_006483646.1| PREDICTED: uncharacterized protein LOC102624144 isoform X1 [Citrus
            sinensis]
          Length = 1160

 Score =  433 bits (1113), Expect = e-118
 Identities = 284/632 (44%), Positives = 369/632 (58%), Gaps = 25/632 (3%)
 Frame = +2

Query: 170  PLMATLKRQAFQT-RLDEYSPFKQHEFGYMDRRSSQIRFVKSRMHCKVSTSSLTSCIVGP 346
            P MATL+ +AF+  ++ +  P+     G        +RF K R+     TS++T  I  P
Sbjct: 37   PFMATLQHRAFRNHQVIQLPPYPLIGSG--------LRFRKGRV-----TSAIT--ISYP 81

Query: 347  QVGSCLCRNAVFGSRTGNITHFPSRFRFMDPDTYVYTSRYVP-SGGATLSTYHFGAVFKR 523
            +V    C   +F  R+       S    + P +   +  Y+P   G   S+ +     KR
Sbjct: 82   KVA---CDFFLFRGRSDCSKGALSIHSHLKPRS---SFCYMPLDNGIRFSSLNCEPFSKR 135

Query: 524  SFSKHAKPRSQKVALEPFMKKGVKNISNNEKSGAFTSLQKQAKSLSAQSGFTPRLSLNSN 703
             FS+ ++    K+ +E       ++ S   KS  F   +K+  ++SA+       + +S+
Sbjct: 136  CFSQLSRG---KIGIEKIGVSDARSGSGGGKSW-FNKHRKRNNAVSARGKSN---ATSSS 188

Query: 704  STISSEVLADGGKKDKSFQPGIEN--IDSSTGFXXXXXXXXXXXXXXXXXXXDAGKLKKT 877
             ++S +V A     ++    G+E   + SS                         +L  T
Sbjct: 189  ISVSEDVNAVNSTSEQLVGDGVEGTKLGSSVSNTKQNSKPRARQQQQSRSKKKKEQLSAT 248

Query: 878  EIGSTAKVDKSIQSEELL------------LTGENNSTGNTLAKVNXXXXXXXXXXXXXX 1021
                 A V KS +S  L             LT E  S GNTL                  
Sbjct: 249  VASEQASVGKSCKSVSLAKSSKCKSKQCADLTSEKTSPGNTLE----------------- 291

Query: 1022 XXXXXXXXXXEDAAAVAINGISLEPKSN-----LEQASSSRDSFQTAVPQTTGKIKQAGK 1186
                      +  A+ A+     +  S       + A +++ S Q    +    + +   
Sbjct: 292  ----------QPLASSALTKQQSKKNSGNCGRKKKSAKATKASLQRQTSEEMVIVPRGQN 341

Query: 1187 TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSM 1366
            T++PLYPP GKSV+VVES+TKAKVIQGYLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSM
Sbjct: 342  TQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 401

Query: 1367 VWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSR 1546
            VWEVPS AWTHLKSIKVA++GA+NLILASDPDREGEAIAWHI EMLQQQDALH+++TV+R
Sbjct: 402  VWEVPSAAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVAR 461

Query: 1547 VVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 1726
            VVF EIT+++IK ALQ+PR+ID NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV
Sbjct: 462  VVFHEITEASIKVALQAPREIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 521

Query: 1727 QSAALSLICDREMEILQFKPQEYWTVDALF---KSSKADNYILQSHLTHFHSKKLNQLSV 1897
            QSAALSLICDREMEI +FKPQEYWTV+A+    +S   D +   +HLTHF SK+LNQLS+
Sbjct: 522  QSAALSLICDREMEIDEFKPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSI 581

Query: 1898 GSESEAKTIEQTLNT*SFKV-NGSKRSKVNKN 1990
             S +EAK IEQ +N+ +F+V   SKRS V KN
Sbjct: 582  SSHTEAKDIEQKINSANFQVIKNSKRSMVRKN 613


>ref|XP_006483648.1| PREDICTED: uncharacterized protein LOC102624144 isoform X3 [Citrus
            sinensis]
          Length = 1158

 Score =  432 bits (1110), Expect = e-118
 Identities = 216/298 (72%), Positives = 253/298 (84%), Gaps = 4/298 (1%)
 Frame = +2

Query: 1109 EQASSSRDSFQTAVPQTTGKIKQAGKTRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYE 1288
            + A +++ S Q    +    + +   T++PLYPP GKSV+VVES+TKAKVIQGYLGDMYE
Sbjct: 314  KSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYE 373

Query: 1289 VLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDRE 1468
            VLPSYGH+RDLAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA++GA+NLILASDPDRE
Sbjct: 374  VLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDRE 433

Query: 1469 GEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRA 1648
            GEAIAWHI EMLQQQDALH+++TV+RVVF EIT+++IK ALQ+PR+ID NLVQAYLARRA
Sbjct: 434  GEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAPREIDANLVQAYLARRA 493

Query: 1649 LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALF---K 1819
            LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI +FKPQEYWTV+A+    +
Sbjct: 494  LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKE 553

Query: 1820 SSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKV-NGSKRSKVNKN 1990
            S   D +   +HLTHF SK+LNQLS+ S +EAK IEQ +N+ +F+V   SKRS V KN
Sbjct: 554  SHSLDTFSFPAHLTHFQSKRLNQLSISSHTEAKDIEQKINSANFQVIKNSKRSMVRKN 611


>ref|XP_006483647.1| PREDICTED: uncharacterized protein LOC102624144 isoform X2 [Citrus
            sinensis]
          Length = 1159

 Score =  432 bits (1110), Expect = e-118
 Identities = 216/298 (72%), Positives = 253/298 (84%), Gaps = 4/298 (1%)
 Frame = +2

Query: 1109 EQASSSRDSFQTAVPQTTGKIKQAGKTRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYE 1288
            + A +++ S Q    +    + +   T++PLYPP GKSV+VVES+TKAKVIQGYLGDMYE
Sbjct: 315  KSAKATKASLQRQTSEEMVIVPRGQNTQNPLYPPSGKSVVVVESVTKAKVIQGYLGDMYE 374

Query: 1289 VLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDRE 1468
            VLPSYGH+RDLAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA++GA+NLILASDPDRE
Sbjct: 375  VLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLILASDPDRE 434

Query: 1469 GEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRA 1648
            GEAIAWHI EMLQQQDALH+++TV+RVVF EIT+++IK ALQ+PR+ID NLVQAYLARRA
Sbjct: 435  GEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAPREIDANLVQAYLARRA 494

Query: 1649 LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALF---K 1819
            LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI +FKPQEYWTV+A+    +
Sbjct: 495  LDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVEAVLDKKE 554

Query: 1820 SSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKV-NGSKRSKVNKN 1990
            S   D +   +HLTHF SK+LNQLS+ S +EAK IEQ +N+ +F+V   SKRS V KN
Sbjct: 555  SHSLDTFSFPAHLTHFQSKRLNQLSISSHTEAKDIEQKINSANFQVIKNSKRSMVRKN 612


>emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
          Length = 1039

 Score =  428 bits (1100), Expect = e-117
 Identities = 293/675 (43%), Positives = 371/675 (54%), Gaps = 47/675 (6%)
 Frame = +2

Query: 107  MASFQIHRGVL------ASSSTGRFHHPLMATLKRQAFQTRLDEYSPFKQHEFGYMDRRS 268
            MAS Q+ R         ASSS      P MA L+ + FQ       P+ +   G      
Sbjct: 1    MASIQLQRSYFLSTTTAASSSPSLSFLPFMAKLQYRGFQNYPATSLPYTRVNGGDKFGNF 60

Query: 269  SQIRFVKSRMHCKVSTSSLTSCIVGPQVGSCLCRNA-----VFGSRTGNI-----THFPS 418
            SQI F K  +   V+        + P++   L  NA     +FGS T +           
Sbjct: 61   SQINFRKIGIPALVNN-------IQPKI---LRLNANRNFHIFGSLTDSSRFAVPVQSQL 110

Query: 419  RFRFMDPDTYVYTSRYVPSGGATLSTYHFGAVFKRSFSKHAKPRSQKVAL---------- 568
            R  F +  T +Y +  +   G   S+ ++ A+ KR FS+  + +++   L          
Sbjct: 111  RLGFPNAVTPIYGTLDI---GIRFSSPYYKALAKRPFSQVPRVKNKGDNLGIRDGTAENT 167

Query: 569  ---EPFMK--KGVKNISNNEKS--GAFTSL-QKQAKSLSAQSGFTPRLSLNSNSTISSEV 724
               +PF K  K  K+++ + +S  GA  +    Q   +S+ S     LS + +     E 
Sbjct: 168  SLFKPFNKHRKWEKSLTAHRRSFNGAVRAAGSNQPTKVSSSSSRRSALS-DGDMMTQQEQ 226

Query: 725  LADGGKKDKSFQPGIENIDSSTGFXXXXXXXXXXXXXXXXXXXDAGKLKKTEIGSTAKVD 904
            L D G+KD    P I     S                         K  K ++ ST    
Sbjct: 227  LVDNGRKDVDLSPSISTSPVSNN-------NRGSKATEKQRKQSRTKKNKEQVTSTDASS 279

Query: 905  KSIQSEELLLTGENNSTGNTLAKVNXXXXXXXXXXXXXXXXXXXXXXXXEDAAAVAINGI 1084
               Q +    + E N +  T    +                        +   A+  + +
Sbjct: 280  DVAQKKSTKSSSEANKSNITKKSQSPQASKVRHVSICIYELFQNNSTGNKPVEALD-SSV 338

Query: 1085 SLEPKSNLEQASSSR---------DSFQTAVPQTTGKIKQAG-KTRDPLYPPRGKSVIVV 1234
            S + +S     SS++         +S +     T GKIK    +    LYP  GKSV+VV
Sbjct: 339  STKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVV 398

Query: 1235 ESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIK 1414
            ES+TKAKVIQGYLGDMYEVLPSYGH+RDLA RSGSVRPDDDFSMVWEVPS AWTHLKSIK
Sbjct: 399  ESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIK 458

Query: 1415 VAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQ 1594
            VA+ GA+NLILASDPDREGEAIAWHI EML QQDALHKDLTV+RVVF EIT+S+IK+AL 
Sbjct: 459  VALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALD 518

Query: 1595 SPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIL 1774
            +PR+ID NLV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAAL+LICDREMEI 
Sbjct: 519  APREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEID 578

Query: 1775 QFKPQEYWTVDALF---KSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT* 1945
            +FKPQEYWTV+  F   + S  ++    S+LTHF SKKLNQ S+ S +EAK IEQ +N+ 
Sbjct: 579  EFKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSL 638

Query: 1946 SFKVNGSKRSKVNKN 1990
             FKV GSKR+K+ KN
Sbjct: 639  EFKVIGSKRNKMRKN 653


>ref|XP_006450082.1| hypothetical protein CICLE_v10007345mg [Citrus clementina]
            gi|557553308|gb|ESR63322.1| hypothetical protein
            CICLE_v10007345mg [Citrus clementina]
          Length = 984

 Score =  427 bits (1099), Expect = e-117
 Identities = 220/314 (70%), Positives = 257/314 (81%), Gaps = 16/314 (5%)
 Frame = +2

Query: 1097 KSNLEQASSSRDSFQTAVPQTTGKIKQAGKTR------------DPLYPPRGKSVIVVES 1240
            K   EQ S++  S Q +V ++   + QA  ++            +PLYPP GKSV+VVES
Sbjct: 124  KKKKEQLSATVASEQASVGKSCKSVSQAKSSKCKSEQCADLTSENPLYPPSGKSVVVVES 183

Query: 1241 LTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVA 1420
            +TKAKVIQGYLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA
Sbjct: 184  VTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVA 243

Query: 1421 ITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSP 1600
            ++GA+NLILASDPDREGEAIAWHI EMLQQQDALH+++TV+RVVF EIT+++IK ALQ+ 
Sbjct: 244  LSGAENLILASDPDREGEAIAWHIVEMLQQQDALHENITVARVVFHEITEASIKVALQAA 303

Query: 1601 RDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQF 1780
            R+ID NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI +F
Sbjct: 304  REIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEF 363

Query: 1781 KPQEYWTVDALF---KSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SF 1951
            KPQEYWTV+A+    +S   D +   +HLTHF SK+LNQLS+GS +EAK IEQ +N+ +F
Sbjct: 364  KPQEYWTVEAVLDKKESHSLDTFSFPAHLTHFQSKRLNQLSIGSHTEAKDIEQKINSANF 423

Query: 1952 KV-NGSKRSKVNKN 1990
            +V    KRS V KN
Sbjct: 424  QVIKNYKRSMVRKN 437


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  427 bits (1097), Expect = e-116
 Identities = 292/674 (43%), Positives = 366/674 (54%), Gaps = 46/674 (6%)
 Frame = +2

Query: 107  MASFQIHRGVL------ASSSTGRFHHPLMATLKRQAFQTRLDEYSPFKQHEFGYMDRRS 268
            MAS Q+ R         ASSS      P MA L+ + FQ       P  +   G      
Sbjct: 1    MASIQLQRSYFLSTTTAASSSPSLSFLPFMAKLQYRGFQNYPATSLPCTRLNGGDKFGNF 60

Query: 269  SQIRFVKSRMHCKVSTSSLTSCIVGPQVGSCLCRNA-VFGSRTGNI-----THFPSRFRF 430
            SQI F K      +   +L + I    +   + RN  +FGS T +           R  F
Sbjct: 61   SQINFRK------IGIPALVNNIQPKILRLNVNRNFHIFGSLTDSSRFAVPVQSQLRLGF 114

Query: 431  MDPDTYVYTSRYVPSGGATLSTYHFGAVFKRSFSKHAKPRSQKVAL-------------E 571
             +  T +Y +  +   G   S+ ++ A+ KR FS+  + +++   L             +
Sbjct: 115  PNAVTPIYGTLDI---GIRFSSPYYKALAKRPFSQVPRVKNKGDNLGIRDGTAENTSLFK 171

Query: 572  PFMK--KGVKNISNNEKS--GAFTSL-QKQAKSLSAQSGFTPRLSLNSNSTISSEVLADG 736
            PF K  K  K+++ + +S  GA  +    Q   +S+ S     L  + +     E L D 
Sbjct: 172  PFNKHRKWEKSLTAHRRSFNGAVRAAGSNQPTKVSSSSSRRSALG-DGDMMTQQEQLVDN 230

Query: 737  GKKDKSFQPGIENIDSSTGFXXXXXXXXXXXXXXXXXXX----------DAGKLKKTEIG 886
            G+KD    P I     S                                D  + K T+  
Sbjct: 231  GRKDADLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQVTSTDASSDVAQKKSTKSS 290

Query: 887  STAKVDKSIQSEELLLTGENNSTGNTLAKVNXXXXXXXXXXXXXXXXXXXXXXXXEDAAA 1066
            S A      +  +     +NNSTGN   +                          + + +
Sbjct: 291  SEANKSNITKKSQSPQASKNNSTGNKPVEA------------------------LDSSVS 326

Query: 1067 VAINGISLEPKSNLEQASS--SRDSFQTAVPQTTGKIKQAG-KTRDPLYPPRGKSVIVVE 1237
                       SN +  S   + +S +     T GKIK    +    LYP  GKSV+VVE
Sbjct: 327  TKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKKLYPSSGKSVVVVE 386

Query: 1238 SLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKV 1417
            S+TKAKVIQGYLGDMYEVLPSYGH+RDLA RSGSVRPDDDFSMVWEVPS AWTHLKSIKV
Sbjct: 387  SVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHLKSIKV 446

Query: 1418 AITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQS 1597
            A+ GA+NLILASDPDREGEAIAWHI EML QQDALHKDLTV+RVVF EIT+S+IK+AL +
Sbjct: 447  ALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIKSALDA 506

Query: 1598 PRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQ 1777
            PR+ID NLV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAAL+LICDREMEI +
Sbjct: 507  PREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDREMEIDE 566

Query: 1778 FKPQEYWTVDALF---KSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*S 1948
            FKPQEYWTV+  F   + S  ++    S+LTHF SKKLNQ S+ S +EAK IEQ +N+  
Sbjct: 567  FKPQEYWTVEVEFNRKQGSSMNSKFFPSYLTHFDSKKLNQFSISSHTEAKAIEQEINSLE 626

Query: 1949 FKVNGSKRSKVNKN 1990
            FKV GSKR+K+ KN
Sbjct: 627  FKVIGSKRNKMRKN 640


>ref|XP_004291220.1| PREDICTED: DNA topoisomerase 1-like [Fragaria vesca subsp. vesca]
          Length = 1175

 Score =  424 bits (1090), Expect = e-116
 Identities = 265/606 (43%), Positives = 348/606 (57%), Gaps = 29/606 (4%)
 Frame = +2

Query: 260  RRSSQIRFVKSRMHCKVSTSSLTSCIVGPQVGSCLCRNAVFGSRTGNITHFPSRFRFMDP 439
            R  S++RF KSR+ C +++        G + G         G          S+ R    
Sbjct: 66   RNYSRLRFRKSRVSCMITS-------YGAKAGPTFAPLRRSGDVFQGAFSIDSQLRLSAV 118

Query: 440  DTY----VYTSRYVPSG-GATLSTYHFGAVFKRSFSK--HAKPRSQKVALEPFMKKGVKN 598
            +      V +  ++ +G  ++L     G   KR  S+      + + V  +   +K  K 
Sbjct: 119  NALGTANVMSRGFLGNGCRSSLLDSRVGDYSKRFLSQVPDVTSKVENVGSQDGRRKWFKM 178

Query: 599  ISNNEKSGAFTSLQKQAKSLSAQSGFTPRLSLNSNSTISSEVLADGGKKDKSFQPGIENI 778
            ISN +K      L+K   + S        +S +++  +S+E      K+D+  +  I N 
Sbjct: 179  ISNRKK------LKKALATQSETEATVSSISKDADVKVSNETQVGNEKEDEKLESSISN- 231

Query: 779  DSSTGFXXXXXXXXXXXXXXXXXXXDAGKLKKTEIGSTAKVDKSIQSEELLLTGENNSTG 958
                                         + KT+  S  K  +  +S++   T E +S  
Sbjct: 232  ---------------------------SPISKTKEVSKPKAKRRSKSKK---TKEQDSAT 261

Query: 959  NTLAKVNXXXXXXXXXXXXXXXXXXXXXXXXEDAAAVAI--------NGISLEPKSNLE- 1111
            N +A V                         +D    A         N  S +P+ N + 
Sbjct: 262  NAVADVASTQSSESTSQTKKSGRSKKGEKSAQDKGLSATVKTPVDLANRSSTKPRRNKKG 321

Query: 1112 --------QASSSRDSFQTAVPQTTGKIKQAGK-TRDPLYPPRGKSVIVVESLTKAKVIQ 1264
                      +S+  S Q  +PQ  GK+K  GK T   LYP  GK+V+VVES+TKAKVIQ
Sbjct: 322  EKDSEKEKSINSAAKSPQKLIPQEMGKLKPYGKITTKQLYPATGKTVVVVESVTKAKVIQ 381

Query: 1265 GYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLI 1444
            GYLGDM+EVLPSYGH+RDLAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA++GA+NLI
Sbjct: 382  GYLGDMFEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLI 441

Query: 1445 LASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLV 1624
            LASDPDREGEAIAWHI EMLQQQDAL KD+ V+RVVF EIT+++IK+ALQ+PR+ID+NLV
Sbjct: 442  LASDPDREGEAIAWHIIEMLQQQDALRKDINVARVVFHEITEASIKSALQAPREIDQNLV 501

Query: 1625 QAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTV 1804
             AYLARRALDYLIGFNISPLLWRKLP CQSAGRVQSAAL+L+CDREMEI +FKPQEYWT+
Sbjct: 502  HAYLARRALDYLIGFNISPLLWRKLPSCQSAGRVQSAALALVCDREMEIDKFKPQEYWTI 561

Query: 1805 DALFKSSKADNYI----LQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKR 1972
            D     ++  + +    L +HLTHF SKKL+Q S+ S +EAK IEQ +N+ +FKV  SK+
Sbjct: 562  DIELNQNEPGSSVNAISLPAHLTHFDSKKLDQFSISSHTEAKDIEQQINSETFKVISSKK 621

Query: 1973 SKVNKN 1990
            +K+ KN
Sbjct: 622  NKLRKN 627


>ref|XP_006382211.1| hypothetical protein POPTR_0006s29400g [Populus trichocarpa]
            gi|550337366|gb|ERP60008.1| hypothetical protein
            POPTR_0006s29400g [Populus trichocarpa]
          Length = 1120

 Score =  410 bits (1055), Expect = e-112
 Identities = 274/635 (43%), Positives = 352/635 (55%), Gaps = 19/635 (2%)
 Frame = +2

Query: 143  SSSTGRFH-HPLMATLKRQAFQTRLDEYSPFKQHEFGYMDRRSSQIRFVKSRMHCKVSTS 319
            SSS   FH  PLMA L+ + FQ     + P       YM  + SQI+  K R+   +S +
Sbjct: 13   SSSATVFHFRPLMAKLQCRTFQNYPASHLPIGTTCRNYM--QCSQIKLKKDRLSFIISIN 70

Query: 320  SLTSCIVGPQVGSCLCRNAVFGSRTGNITHFPSRFRFMDPDTYVYTSRYVPSGGATLSTY 499
               S   G  +      N+      G++ ++ S                  + G TL++ 
Sbjct: 71   HSQSLTNGGSMSMSSAINSHLSP--GSLLNYWSF-----------------NNGNTLTSL 111

Query: 500  HFGAVFKRSFSKHAKPRSQKVALEPFMKKGVKNISNNEKSGAFTSLQKQAKSLSAQSGFT 679
              G   KR FS  ++  + K                N+  G F+   K+ K+  A     
Sbjct: 112  ESGVFAKRLFSTASRGSNNK----------------NQNVGGFSKHWKKPKASGAAHD-- 153

Query: 680  PRLSLNSNSTISSEVLADGGKKDKSFQPGIENI--DSSTGFXXXXXXXXXXXXXXXXXXX 853
             +   N+NS IS+        KD       E    D+  G                    
Sbjct: 154  -KDETNTNSRISAS-------KDVDAVTSTETAVGDAKLGSAVSRTRNKKSKVNETEKKE 205

Query: 854  DAGKLKKTEIGSTAKVDKSIQSEELLLTGE-----NNSTGNTLAKVNXXXXXXXXXXXXX 1018
               K  K E   TA  +K+  ++ +  T +      + +G   A+ +             
Sbjct: 206  SKSKKNKGEASFTAVSEKAAGAKSMTTTSQLKKSLPSKSGQVAARASQ------------ 253

Query: 1019 XXXXXXXXXXXEDAAAVAINGISLEPKSNLEQASSS---------RDSFQTAVPQTTGKI 1171
                       + A     NG S + +SN +  +SS           S +   PQ  GK+
Sbjct: 254  -----------KKATEEMPNG-STKQQSNKKNGNSSIKRTTKKAVNGSAEKQKPQKIGKL 301

Query: 1172 KQ--AGKTRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVR 1345
            +    GK +  LYP  GK V+VVES+TKAKVIQGYLGDMYEVLPSYGH+RDLAARSGSVR
Sbjct: 302  QPFAQGKLKS-LYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVR 360

Query: 1346 PDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALH 1525
            PDDDFS+VWEVPS AWTHL SIKVA++GA  LILASDPDREGEAIAWHI EMLQQQDAL 
Sbjct: 361  PDDDFSIVWEVPSAAWTHLNSIKVALSGAKILILASDPDREGEAIAWHIVEMLQQQDALR 420

Query: 1526 KDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPG 1705
            +DLTV+RVVF EIT+++IK ALQ+PR ID NLV AYLARRALDYLIGFNISPLLWRKLPG
Sbjct: 421  QDLTVARVVFHEITETSIKNALQAPRGIDVNLVHAYLARRALDYLIGFNISPLLWRKLPG 480

Query: 1706 CQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALFKSSKADNYILQSHLTHFHSKKLN 1885
            CQSAGRVQSAALSL+CDREMEI +F  QEYWT+ A  K  + D+ ++ +HLTHF SKKLN
Sbjct: 481  CQSAGRVQSAALSLLCDREMEIDEFNSQEYWTIGAKLKKQEQDS-LVNAHLTHFDSKKLN 539

Query: 1886 QLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
            Q S+ S++EAK +EQ +N+  F+V GSK++K ++N
Sbjct: 540  QFSISSDTEAKDMEQKINSADFQVVGSKKTKTHRN 574


>ref|XP_002334451.1| predicted protein [Populus trichocarpa]
          Length = 780

 Score =  410 bits (1055), Expect = e-112
 Identities = 274/635 (43%), Positives = 352/635 (55%), Gaps = 19/635 (2%)
 Frame = +2

Query: 143  SSSTGRFH-HPLMATLKRQAFQTRLDEYSPFKQHEFGYMDRRSSQIRFVKSRMHCKVSTS 319
            SSS   FH  PLMA L+ + FQ     + P       YM  + SQI+  K R+   +S +
Sbjct: 13   SSSATVFHFRPLMAKLQCRTFQNYPASHLPIGTTCRNYM--QCSQIKLKKDRLSFIISIN 70

Query: 320  SLTSCIVGPQVGSCLCRNAVFGSRTGNITHFPSRFRFMDPDTYVYTSRYVPSGGATLSTY 499
               S   G  +      N+      G++ ++ S                  + G TL++ 
Sbjct: 71   HSQSLTNGGSMSMSSAINSHLSP--GSLLNYWSF-----------------NNGNTLTSL 111

Query: 500  HFGAVFKRSFSKHAKPRSQKVALEPFMKKGVKNISNNEKSGAFTSLQKQAKSLSAQSGFT 679
              G   KR FS  ++  + K                N+  G F+   K+ K+  A     
Sbjct: 112  ESGVFAKRLFSTASRGSNNK----------------NQNVGGFSKHWKKPKASGAAHD-- 153

Query: 680  PRLSLNSNSTISSEVLADGGKKDKSFQPGIENI--DSSTGFXXXXXXXXXXXXXXXXXXX 853
             +   N+NS IS+        KD       E    D+  G                    
Sbjct: 154  -KDETNTNSRISAS-------KDVDAVTSTETAVGDAKLGSAVSRTRNKKSKVNETEKKE 205

Query: 854  DAGKLKKTEIGSTAKVDKSIQSEELLLTGE-----NNSTGNTLAKVNXXXXXXXXXXXXX 1018
               K  K E   TA  +K+  ++ +  T +      + +G   A+ +             
Sbjct: 206  SKSKKNKGEASFTAVSEKAAGAKSMTTTSQLKKSLPSKSGQVAARASQ------------ 253

Query: 1019 XXXXXXXXXXXEDAAAVAINGISLEPKSNLEQASSS---------RDSFQTAVPQTTGKI 1171
                       + A     NG S + +SN +  +SS           S +   PQ  GK+
Sbjct: 254  -----------KKATEEMPNG-STKQQSNKKNGNSSIKRTTKKAVNGSAEKQKPQKIGKL 301

Query: 1172 KQ--AGKTRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVR 1345
            +    GK +  LYP  GK V+VVES+TKAKVIQGYLGDMYEVLPSYGH+RDLAARSGSVR
Sbjct: 302  QPFAQGKLKS-LYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVR 360

Query: 1346 PDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALH 1525
            PDDDFS+VWEVPS AWTHL SIKVA++GA  LILASDPDREGEAIAWHI EMLQQQDAL 
Sbjct: 361  PDDDFSIVWEVPSAAWTHLNSIKVALSGAKILILASDPDREGEAIAWHIVEMLQQQDALR 420

Query: 1526 KDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPG 1705
            +DLTV+RVVF EIT+++IK ALQ+PR ID NLV AYLARRALDYLIGFNISPLLWRKLPG
Sbjct: 421  QDLTVARVVFHEITETSIKNALQAPRGIDVNLVHAYLARRALDYLIGFNISPLLWRKLPG 480

Query: 1706 CQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALFKSSKADNYILQSHLTHFHSKKLN 1885
            CQSAGRVQSAALSL+CDREMEI +F  QEYWT+ A  K  + D+ ++ +HLTHF SKKLN
Sbjct: 481  CQSAGRVQSAALSLLCDREMEIDEFNSQEYWTIGAKLKKQEQDS-LVNAHLTHFDSKKLN 539

Query: 1886 QLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
            Q S+ S++EAK +EQ +N+  F+V GSK++K ++N
Sbjct: 540  QFSISSDTEAKDMEQKINSADFQVVGSKKTKTHRN 574


>gb|ESW30781.1| hypothetical protein PHAVU_002G181900g [Phaseolus vulgaris]
          Length = 1057

 Score =  408 bits (1048), Expect = e-111
 Identities = 200/271 (73%), Positives = 232/271 (85%), Gaps = 3/271 (1%)
 Frame = +2

Query: 1187 TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSM 1366
            T  PLYPP GKSV+VVES+TKAKVI+GYLGDMYEVLPSYGH+RDLAARSGSVRPD+DFSM
Sbjct: 238  THKPLYPPSGKSVVVVESVTKAKVIKGYLGDMYEVLPSYGHVRDLAARSGSVRPDEDFSM 297

Query: 1367 VWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSR 1546
            VWEVPSPAWTHLKSIKVA++GA+NLILASDPDREGEAI+WHI EMLQQQ ALH +++++R
Sbjct: 298  VWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAISWHIIEMLQQQGALHDNISLAR 357

Query: 1547 VVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 1726
            VVF EIT+ +IK ALQ+PR+ID NLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV
Sbjct: 358  VVFHEITEKSIKVALQTPREIDINLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 417

Query: 1727 QSAALSLICDREMEILQFKPQEYWTVDALFKS---SKADNYILQSHLTHFHSKKLNQLSV 1897
            QSAAL+LICDREMEI +FKP+EYWTV+   K        N+   SHLTHF SKKLNQ S+
Sbjct: 418  QSAALALICDREMEIDEFKPKEYWTVEVQLKKKDPGSNQNFTFPSHLTHFDSKKLNQFSI 477

Query: 1898 GSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             S++EA+ I+  +N+  F V   K+SK  +N
Sbjct: 478  TSDAEARYIQSNINSADFHVVCLKKSKTRRN 508


>gb|EMJ26477.1| hypothetical protein PRUPE_ppa001428mg [Prunus persica]
          Length = 831

 Score =  408 bits (1048), Expect = e-111
 Identities = 203/281 (72%), Positives = 238/281 (84%), Gaps = 5/281 (1%)
 Frame = +2

Query: 1163 GKIKQAGK-TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGS 1339
            GK+K  GK T   LYP  G++V+VVES TKAKVIQGYLGDM+EVLPSYGH+RDLAARSGS
Sbjct: 2    GKVKPQGKMTLKQLYPATGRTVVVVESATKAKVIQGYLGDMFEVLPSYGHVRDLAARSGS 61

Query: 1340 VRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDA 1519
            VRPDDDFSMVWEVPS AWTHLKSIKVA+TGA+NLILASDPDREGEAIAWHI EMLQQQDA
Sbjct: 62   VRPDDDFSMVWEVPSAAWTHLKSIKVALTGAENLILASDPDREGEAIAWHIIEMLQQQDA 121

Query: 1520 LHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKL 1699
            L +D+ V+RVVF EIT+++IK+ALQ+PR+IDENLV AYLARRALDYLIGFNISPLLWRKL
Sbjct: 122  LREDINVARVVFHEITETSIKSALQAPREIDENLVHAYLARRALDYLIGFNISPLLWRKL 181

Query: 1700 PGCQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALFKSSKADNYI----LQSHLTHF 1867
            PGCQSAGRVQSAAL+L+CDREMEI +FK QEYWT +      +  + +      +HLTHF
Sbjct: 182  PGCQSAGRVQSAALALLCDREMEIDEFKQQEYWTAEIELNQKEPGSSVNAPDFSAHLTHF 241

Query: 1868 HSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             SKKLNQ S+ S ++AK IEQ +N+ +F+V  SK++K+ KN
Sbjct: 242  DSKKLNQFSIDSHTKAKEIEQQINSQNFQVVSSKKNKMRKN 282


>ref|XP_006412616.1| hypothetical protein EUTSA_v10024242mg [Eutrema salsugineum]
            gi|557113786|gb|ESQ54069.1| hypothetical protein
            EUTSA_v10024242mg [Eutrema salsugineum]
          Length = 1214

 Score =  406 bits (1044), Expect = e-110
 Identities = 210/302 (69%), Positives = 243/302 (80%), Gaps = 4/302 (1%)
 Frame = +2

Query: 1097 KSNLEQASSSRDSFQTAVPQTT---GKIKQAGKTRD-PLYPPRGKSVIVVESLTKAKVIQ 1264
            +  L+   +S+ + Q  VPQ       I+  G+    PLYPP GKSV+VVES+TKAKVIQ
Sbjct: 358  QQQLKSTKASKAAKQKQVPQPQPMKNSIEHRGQNASKPLYPPSGKSVVVVESITKAKVIQ 417

Query: 1265 GYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLI 1444
            GYLGDMYEVLPSYGHIRDLA+RSGSVRPDDDFSMVWEVPS AWTH+KSIKVA+ GA+NLI
Sbjct: 418  GYLGDMYEVLPSYGHIRDLASRSGSVRPDDDFSMVWEVPSSAWTHIKSIKVALNGAENLI 477

Query: 1445 LASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLV 1624
            LASDPDREGEAIAWHI EMLQQQ ALH+ +TV+RVVF EIT+SAIK+ALQSPR+ID +LV
Sbjct: 478  LASDPDREGEAIAWHIIEMLQQQGALHESMTVARVVFHEITESAIKSALQSPREIDGDLV 537

Query: 1625 QAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTV 1804
             AYLARRALDYLIGFNISPLLWRKLPGC SAGRVQSAAL+LICDRE EI  FKPQEYWTV
Sbjct: 538  HAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALALICDRESEIDGFKPQEYWTV 597

Query: 1805 DALFKSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVN 1984
              +    K  +    +HLT  +SKKLNQLS+ SE+EA+ IEQ + +  F V G+K+S + 
Sbjct: 598  -GIKVQGKEYSAPFPAHLTSLNSKKLNQLSISSEAEAQDIEQRIRSEGFLVKGTKKSTIR 656

Query: 1985 KN 1990
            KN
Sbjct: 657  KN 658


>ref|XP_004233765.1| PREDICTED: DNA topoisomerase 1-like [Solanum lycopersicum]
          Length = 1173

 Score =  406 bits (1043), Expect = e-110
 Identities = 213/310 (68%), Positives = 244/310 (78%), Gaps = 4/310 (1%)
 Frame = +2

Query: 1073 INGISLEPKSNLEQASSSRDSFQTAVPQTTGKIKQAGKTRDP-LYPPRGKSVIVVESLTK 1249
            +NG ++ P  +      S D         + K K  G+ + P LYPP  KSV+VVES+TK
Sbjct: 324  LNGATVVPSDSKLVTDKSSD--------VSSKSKPPGQKKWPKLYPPTAKSVLVVESVTK 375

Query: 1250 AKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITG 1429
            A+VIQGYLGDM+EVLPSYGH+RDLAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA++G
Sbjct: 376  ARVIQGYLGDMFEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSG 435

Query: 1430 ADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDI 1609
            A NLILASDPDREGEAI+WHI EMLQQQDAL  D+ V+RVVF EIT+S+IKA+LQSPR+I
Sbjct: 436  AQNLILASDPDREGEAISWHIIEMLQQQDALRDDINVTRVVFNEITESSIKASLQSPREI 495

Query: 1610 DENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQ 1789
            D NLV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI  FKPQ
Sbjct: 496  DANLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDGFKPQ 555

Query: 1790 EYWTVDALFKSSK---ADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVN 1960
            EYWTV   FK +K     N  L SHLTHF +KKL+Q SV S +EA  IE  +N+ +F+V 
Sbjct: 556  EYWTVLVEFKKNKNLDLANNFLSSHLTHFDTKKLSQFSVSSHTEAMEIEGKINSSNFEVL 615

Query: 1961 GSKRSKVNKN 1990
             SK +K  +N
Sbjct: 616  SSKITKKQRN 625


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  404 bits (1039), Expect = e-110
 Identities = 209/304 (68%), Positives = 241/304 (79%), Gaps = 2/304 (0%)
 Frame = +2

Query: 1085 SLEPKSNLEQASSSRDSFQTAVPQ-TTGKIKQAGKTRD-PLYPPRGKSVIVVESLTKAKV 1258
            S   + +L+   +S+   Q  VPQ     I+  G+    PLYPP GKSVIVVES+TKAK+
Sbjct: 428  SKSEQQHLKSTKASKAPKQKLVPQHMKNSIEHRGQNASKPLYPPSGKSVIVVESMTKAKI 487

Query: 1259 IQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADN 1438
            IQGYLGDMYEVLPSYGHIRDLA RSGSVRPDDDFSMVWEVPS AWTH+KSIKVA+ GA+N
Sbjct: 488  IQGYLGDMYEVLPSYGHIRDLATRSGSVRPDDDFSMVWEVPSSAWTHIKSIKVALNGAEN 547

Query: 1439 LILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDEN 1618
            LILASDPDREGEAIAWHI EMLQQQ ALH+ +TV+RVVF EIT+SAIK+ALQSPR+ID +
Sbjct: 548  LILASDPDREGEAIAWHIIEMLQQQGALHESMTVARVVFHEITESAIKSALQSPREIDGD 607

Query: 1619 LVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYW 1798
            LV AYLARRALDYLIGFNISPLLWRKLPGC SAGRVQSAAL+L+CDRE EI  FKPQEYW
Sbjct: 608  LVHAYLARRALDYLIGFNISPLLWRKLPGCPSAGRVQSAALALVCDRESEIDGFKPQEYW 667

Query: 1799 TVDALFKSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKRSK 1978
            TV    K  K ++    +HLT  +SK+LNQLS+ SE+ A+ IEQ + +  F V G+K S 
Sbjct: 668  TVGIKVK-GKDNSATFSAHLTSLNSKRLNQLSISSEANAQDIEQRIKSEGFLVKGTKTST 726

Query: 1979 VNKN 1990
              KN
Sbjct: 727  TRKN 730


>ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223532629|gb|EEF34415.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 1071

 Score =  404 bits (1039), Expect = e-110
 Identities = 208/300 (69%), Positives = 241/300 (80%)
 Frame = +2

Query: 1091 EPKSNLEQASSSRDSFQTAVPQTTGKIKQAGKTRDPLYPPRGKSVIVVESLTKAKVIQGY 1270
            +PK+ ++    S D  Q   P    K  + G  + PLYPP  KSV+VVES+TKAKVIQGY
Sbjct: 249  KPKA-IKTVKVSPDKQQQHKPMHKSKPFRQGSLK-PLYPPTAKSVVVVESVTKAKVIQGY 306

Query: 1271 LGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILA 1450
            LG M+EVLPSYGH+RDLAARSGSVRPDDDFSMVWEVPSPAWTHLK+IKVA+ GA+NL+LA
Sbjct: 307  LGPMFEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSPAWTHLKTIKVALNGAENLVLA 366

Query: 1451 SDPDREGEAIAWHIFEMLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQA 1630
            SDPDREGEAIAWHI EMLQQQDALH+ +TV+RVVF EIT+ +IK ALQ+PR+ID NLV A
Sbjct: 367  SDPDREGEAIAWHIIEMLQQQDALHQGVTVARVVFHEITEQSIKNALQAPREIDLNLVHA 426

Query: 1631 YLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTVDA 1810
            YLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEI +F PQEYWT+D 
Sbjct: 427  YLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFTPQEYWTIDV 486

Query: 1811 LFKSSKADNYILQSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
                 +  + +  + LTHF   KLNQLSV S +EA+ IEQ +N  SF V G+K SK+ +N
Sbjct: 487  ELYIMETGSSV-NARLTHFDFNKLNQLSVRSHTEARDIEQKINVASFLVAGAKESKMRRN 545


>ref|XP_004498560.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum]
            gi|502124518|ref|XP_004498561.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Cicer arietinum]
          Length = 1047

 Score =  404 bits (1038), Expect = e-110
 Identities = 209/329 (63%), Positives = 250/329 (75%), Gaps = 16/329 (4%)
 Frame = +2

Query: 1052 EDAAAVAINGISLEPKSNLEQASS--SRDSFQTAVPQTTGKIKQAGKTR----------- 1192
            E+ +    + +  E K+NL+++SS  + +  Q     T  K K    ++           
Sbjct: 173  EEVSIKPSSKVKKEKKTNLKESSSISTSEEIQDDSASTRSKKKDVNSSQVDLEKPLGKFS 232

Query: 1193 -DPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSMV 1369
              PLYPP GKSV+VVES+TKAKVIQGYLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSMV
Sbjct: 233  GKPLYPPSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMV 292

Query: 1370 WEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSRV 1549
            WEVPS AW+HLK+I  A++GA+NLILASDPDREGEAIAWHI EMLQQQ ALH ++ ++RV
Sbjct: 293  WEVPSSAWSHLKNINAALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNIFLARV 352

Query: 1550 VFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 1729
            VF EIT+ +IK ALQ+PR+ID NLV AYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ
Sbjct: 353  VFHEITEKSIKTALQAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQ 412

Query: 1730 SAALSLICDREMEILQFKPQEYWTVDALFKSSKADNYILQ--SHLTHFHSKKLNQLSVGS 1903
            SAALSLICDRE+EI QFKP+EYWT +  F   ++ N  L   +HLTHF S KLNQ S+ S
Sbjct: 413  SAALSLICDREIEIDQFKPKEYWTAEVHFNMRESSNKDLTFLAHLTHFDSNKLNQFSITS 472

Query: 1904 ESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
            + EA+ IE  +N+  F+V   KRSKV +N
Sbjct: 473  DVEARDIESKINSAEFQVINMKRSKVRRN 501


>ref|XP_006601080.1| PREDICTED: DNA topoisomerase 3-alpha-like isoform X6 [Glycine max]
          Length = 879

 Score =  403 bits (1035), Expect = e-109
 Identities = 199/271 (73%), Positives = 231/271 (85%), Gaps = 3/271 (1%)
 Frame = +2

Query: 1187 TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSM 1366
            T  PLYPP GKSV+VVES+TKAKVI+ YLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSM
Sbjct: 251  TYKPLYPPTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 310

Query: 1367 VWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSR 1546
            VWEVPSPAWTHLKSIKVA++GA+NLILASDPDREGEAIAWHI EMLQQQ ALH +++++R
Sbjct: 311  VWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLAR 370

Query: 1547 VVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 1726
            VVF EIT+ +IK +LQ+PR+ID NLVQAYLARRALDYLIGF+ISPLLWRKLPGCQSAGRV
Sbjct: 371  VVFHEITEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQSAGRV 430

Query: 1727 QSAALSLICDREMEILQFKPQEYWTVDALFKSSKA---DNYILQSHLTHFHSKKLNQLSV 1897
            QSAALSLICDREMEI +FKP+EYW V+   K  +     N    +HLTHF SKKLNQ S+
Sbjct: 431  QSAALSLICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLTFPAHLTHFDSKKLNQFSI 490

Query: 1898 GSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             S++EA+ I+ T+N+  F V   K+SK  +N
Sbjct: 491  TSDTEARDIQSTINSADFHVVSLKKSKSRRN 521


>ref|XP_006601079.1| PREDICTED: DNA topoisomerase 3-alpha-like isoform X5 [Glycine max]
          Length = 1001

 Score =  403 bits (1035), Expect = e-109
 Identities = 199/271 (73%), Positives = 231/271 (85%), Gaps = 3/271 (1%)
 Frame = +2

Query: 1187 TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSM 1366
            T  PLYPP GKSV+VVES+TKAKVI+ YLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSM
Sbjct: 251  TYKPLYPPTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 310

Query: 1367 VWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSR 1546
            VWEVPSPAWTHLKSIKVA++GA+NLILASDPDREGEAIAWHI EMLQQQ ALH +++++R
Sbjct: 311  VWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLAR 370

Query: 1547 VVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 1726
            VVF EIT+ +IK +LQ+PR+ID NLVQAYLARRALDYLIGF+ISPLLWRKLPGCQSAGRV
Sbjct: 371  VVFHEITEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQSAGRV 430

Query: 1727 QSAALSLICDREMEILQFKPQEYWTVDALFKSSKA---DNYILQSHLTHFHSKKLNQLSV 1897
            QSAALSLICDREMEI +FKP+EYW V+   K  +     N    +HLTHF SKKLNQ S+
Sbjct: 431  QSAALSLICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLTFPAHLTHFDSKKLNQFSI 490

Query: 1898 GSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             S++EA+ I+ T+N+  F V   K+SK  +N
Sbjct: 491  TSDTEARDIQSTINSADFHVVSLKKSKSRRN 521


>ref|XP_006601078.1| PREDICTED: DNA topoisomerase 3-alpha-like isoform X4 [Glycine max]
          Length = 1068

 Score =  403 bits (1035), Expect = e-109
 Identities = 199/271 (73%), Positives = 231/271 (85%), Gaps = 3/271 (1%)
 Frame = +2

Query: 1187 TRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRDLAARSGSVRPDDDFSM 1366
            T  PLYPP GKSV+VVES+TKAKVI+ YLGDMYEVLPSYGH+RDLAARSGSVRPDDDFSM
Sbjct: 249  TYKPLYPPTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSM 308

Query: 1367 VWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFEMLQQQDALHKDLTVSR 1546
            VWEVPSPAWTHLKSIKVA++GA+NLILASDPDREGEAIAWHI EMLQQQ ALH +++++R
Sbjct: 309  VWEVPSPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLAR 368

Query: 1547 VVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRV 1726
            VVF EIT+ +IK +LQ+PR+ID NLVQAYLARRALDYLIGF+ISPLLWRKLPGCQSAGRV
Sbjct: 369  VVFHEITEKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQSAGRV 428

Query: 1727 QSAALSLICDREMEILQFKPQEYWTVDALFKSSKA---DNYILQSHLTHFHSKKLNQLSV 1897
            QSAALSLICDREMEI +FKP+EYW V+   K  +     N    +HLTHF SKKLNQ S+
Sbjct: 429  QSAALSLICDREMEIDEFKPKEYWIVEVQLKKKELRSNKNLTFPAHLTHFDSKKLNQFSI 488

Query: 1898 GSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             S++EA+ I+ T+N+  F V   K+SK  +N
Sbjct: 489  TSDTEARDIQSTINSADFHVVSLKKSKSRRN 519


>gb|EOY29085.1| DNA topoisomerase isoform 5 [Theobroma cacao]
          Length = 965

 Score =  403 bits (1035), Expect = e-109
 Identities = 202/288 (70%), Positives = 238/288 (82%), Gaps = 4/288 (1%)
 Frame = +2

Query: 1139 QTAVPQTTGKIKQAGKTRDPLYPPRGKSVIVVESLTKAKVIQGYLGDMYEVLPSYGHIRD 1318
            + A  QT   I Q  +    LYPP GKSV+VVES+TKAKVIQGYLGD +EVLPSYGH+RD
Sbjct: 344  EAAQKQTPQHISQGQRPLKQLYPPTGKSVMVVESVTKAKVIQGYLGDTFEVLPSYGHVRD 403

Query: 1319 LAARSGSVRPDDDFSMVWEVPSPAWTHLKSIKVAITGADNLILASDPDREGEAIAWHIFE 1498
            LAARSGSVRPDDDFSMVWEVPS AWTHLKSIKVA++GA+NL+LASDPDREGEAIAWHIFE
Sbjct: 404  LAARSGSVRPDDDFSMVWEVPSAAWTHLKSIKVALSGAENLVLASDPDREGEAIAWHIFE 463

Query: 1499 MLQQQDALHKDLTVSRVVFQEITQSAIKAALQSPRDIDENLVQAYLARRALDYLIGFNIS 1678
            MLQQQDAL + L V+RVVF EIT+++IK+ALQ PR+ID NLV AYLARRALDYLIGFNIS
Sbjct: 464  MLQQQDALGEKLNVARVVFHEITEASIKSALQVPREIDVNLVHAYLARRALDYLIGFNIS 523

Query: 1679 PLLWRKLPGCQSAGRVQSAALSLICDREMEILQFKPQEYWTVDALFKSSKAD----NYIL 1846
            PLLWRKLPGCQSAGRVQSAALSLICDREMEI +FKPQEYWT++   K  +++    +   
Sbjct: 524  PLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTIEVQLKIEESNVPVKDTSF 583

Query: 1847 QSHLTHFHSKKLNQLSVGSESEAKTIEQTLNT*SFKVNGSKRSKVNKN 1990
             +HLTH++SKKL Q S+ S++ AK IEQ +N  + +V  SKR+ + +N
Sbjct: 584  PAHLTHYNSKKLGQFSISSDTGAKDIEQKINLENLRVISSKRNTMRRN 631