BLASTX nr result

ID: Rheum21_contig00019970 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00019970
         (315 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309757.2| hypothetical protein POPTR_0007s01210g [Popu...    62   1e-07
ref|XP_002523984.1| leucine-rich repeat containing protein, puta...    60   2e-07
gb|EOY10377.1| Leucine-rich repeat containing protein, putative ...    59   7e-07

>ref|XP_002309757.2| hypothetical protein POPTR_0007s01210g [Populus trichocarpa]
           gi|550333876|gb|EEE90207.2| hypothetical protein
           POPTR_0007s01210g [Populus trichocarpa]
          Length = 1304

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
 Frame = -1

Query: 234 DNTGEILPQVHNTTKLRSFMLMIEGWDVD-----QQLRGNKWLRALSLSGVGFV---DVP 79
           D   +I   +H    LR+F+L+  GW  D       LR  K LR LS  G G++    +P
Sbjct: 540 DQVSKIFEHIHEVQHLRNFLLVAPGWKADGKVLHDMLRILKRLRVLSFVGSGYIHQFQLP 599

Query: 78  SCIGELKLLRYLDLSQNDFERLPDSV 1
           + IG LK LRYLDLS    ERLP+++
Sbjct: 600 NSIGNLKHLRYLDLSGKSIERLPENM 625


>ref|XP_002523984.1| leucine-rich repeat containing protein, putative [Ricinus communis]
           gi|223536711|gb|EEF38352.1| leucine-rich repeat
           containing protein, putative [Ricinus communis]
          Length = 1143

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
 Frame = -1

Query: 297 MQTKPSSQYHSARHVHIGCGPDNTGEILPQVHNTTKLRSFMLMIE-----GWDVDQQLRG 133
           M +    Q  + RHV + C  +   + +   HN+ KLR+ +L  E     G  +DQ    
Sbjct: 506 MSSFQPEQCQNWRHVSLLC-QNVEAQSMEIAHNSKKLRTLLLPREHLKNFGQALDQLFHS 564

Query: 132 NKWLRALSLSGVGFVDVPSCIGELKLLRYLDLSQNDFERLPDSV 1
            +++RAL LS    +++P  I E KLLRYLDLSQ +   LPDS+
Sbjct: 565 LRYIRALDLSSSTLLELPGSIKECKLLRYLDLSQTEIRVLPDSI 608


>gb|EOY10377.1| Leucine-rich repeat containing protein, putative isoform 1
           [Theobroma cacao] gi|508718481|gb|EOY10378.1|
           Leucine-rich repeat containing protein, putative isoform
           1 [Theobroma cacao] gi|508718482|gb|EOY10379.1|
           Leucine-rich repeat containing protein, putative isoform
           1 [Theobroma cacao]
          Length = 1156

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
 Frame = -1

Query: 261 RHVHIGCGPDNTGEILPQVHNTTKLRSFMLMIE-----GWDVDQQLRGNKWLRALSLSGV 97
           RHV +  G D     L  +  +TKLR+ +L  E     G  +D+     K++R L+LS  
Sbjct: 527 RHVSL-LGQDVENPTLQIIERSTKLRTLLLPGESLKNLGQALDKMFHSLKYIRVLNLSSS 585

Query: 96  GFVDVPSCIGELKLLRYLDLSQNDFERLPDSV 1
            F ++PS I  LKLLRYLDLS+ + + LP+S+
Sbjct: 586 SFSELPSSIENLKLLRYLDLSRTEIKVLPNSI 617


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