BLASTX nr result
ID: Rheum21_contig00019398
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00019398
(466 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 69 8e-10
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 63 4e-08
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 62 1e-07
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 61 1e-07
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 61 2e-07
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 61 2e-07
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 61 2e-07
gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arab... 60 3e-07
gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata] 59 9e-07
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 59 9e-07
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 57 2e-06
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 57 3e-06
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 57 3e-06
gb|ABK28199.1| unknown [Arabidopsis thaliana] 57 3e-06
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 57 3e-06
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 55 1e-05
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 68.6 bits (166), Expect = 8e-10
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Frame = -1
Query: 460 PMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFISR- 284
P+ LWG +GL +AWD+ R+ L++ E+ +G LR + +++ L+ +V C F+SR
Sbjct: 115 PLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRD 174
Query: 283 ------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLPCLVK 137
H Y+EANR+ D N PP+ + +L +D G+++P LV+
Sbjct: 175 WIVRIGHVYREANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRLVR 232
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 63.2 bits (152), Expect = 4e-08
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Frame = -1
Query: 460 PMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFISR- 284
P+ LWG +GL +AWDK F RV L L EL +G L +S + L+ +V C F +R
Sbjct: 852 PLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFTRD 911
Query: 283 ------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
H Y+EANR+ D N P + + L ED G + P
Sbjct: 912 WLVRVSHVYREANRLADGLANYAFFLPLGFHCFEICPEDVLLFLVEDANGTSFP 965
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 61.6 bits (148), Expect = 1e-07
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ + RV L++ L +G L+ + ++ LA +V C FIS
Sbjct: 556 SAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFIS 615
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
+ H Y+EANR+ D N L P +S +L EDV G + P
Sbjct: 616 KDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMGTSFP 671
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 61.2 bits (147), Expect = 1e-07
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +G LAW K+ RV L++ EL +G L+ + + L+ +V C +S
Sbjct: 683 SAPLAELWGVYYGFYLAWTKALTRVELEVDSELVVGFLKTGIGDQHPLSFLVRLCHGLLS 742
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLPCLVK 137
+ H Y+EANR+ D N L+ P + V+L+ED G T P V+
Sbjct: 743 KDWIVRITHVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEVILHEDSLGSTRPRRVR 802
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 60.8 bits (146), Expect = 2e-07
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P LWG +GL AW+K RV L++ E+ +G L+ +S ++ L+ +V C F+
Sbjct: 609 SAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQ 668
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLPCLVK 137
+ H Y+EANR+ D N P +S LL ED G T P V+
Sbjct: 669 KDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVR 728
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 60.8 bits (146), Expect = 2e-07
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P LWG +GL AW+K RV L++ E+ +G L+ +S ++ L+ +V C F+
Sbjct: 500 SAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQ 559
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLPCLVK 137
+ H Y+EANR+ D N P +S LL ED G T P V+
Sbjct: 560 KDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVR 619
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 60.8 bits (146), Expect = 2e-07
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
+ P+ LWG +GL +AWDK F RV L L +L +G L +S + L+ +V C F +
Sbjct: 1111 AAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFT 1170
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
R H Y+EANR+ D N P + +LL DV G P
Sbjct: 1171 RDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFP 1226
>gb|AAG12669.1|AC027033_4 hypothetical protein; 81517-79153 [Arabidopsis thaliana]
Length = 256
Score = 60.1 bits (144), Expect = 3e-07
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P LWG +GL +AW+K RV L++ E+ +G L+ + ++ L+ + C FIS
Sbjct: 55 SAPQAELWGVYYGLYIAWEKWVTRVELEVDSEIVVGFLKTGIGDSHPLSFLARLCYGFIS 114
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLPCLVK 137
+ H Y+EANR+ D N P ++ + ED G + P LV+
Sbjct: 115 KDWIVRISHVYREANRLADGLANYAFTLPLGFHFFHSSPDVVDSVRLEDTSGTSCPRLVR 174
>gb|ABW81036.1| unknown [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL AW+ R++L++ L +G L + ++ L+ +V C FI+
Sbjct: 52 SAPLAELWGVYYGLYTAWEHRVTRLVLEVDSSLVVGFLTTGIGDSHPLSILVRLCYGFIA 111
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTL 152
R H Y++ANR D N V P ++ L +DV G TL
Sbjct: 112 RDWIVRVTHVYRKANRFADGLANYVFSLPLGFHDFVSVPVVVDSFLRDDVVGTTL 166
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW + RV L++ ++ +G L ++ ++ L+ ++ C F+S
Sbjct: 201 SAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLS 260
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
+ H Y+EANR+ D N L P ++S +L +DV GV+ P
Sbjct: 261 KGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDVAGVSYP 316
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 57.4 bits (137), Expect = 2e-06
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ R+ +++ E+ +G L+ ++ + L+ +V C FIS
Sbjct: 194 SAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCHDFIS 253
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTL 152
R H Y+EANR+ D N L P + +L +D G T+
Sbjct: 254 RDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATV 308
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ ++ +++ E+ +G LR + ++ L+ +V C +S
Sbjct: 133 SAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLS 192
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
+ H Y+EANR+ D N P I+ ++++DV G P
Sbjct: 193 KDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYP 248
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ ++ +++ E+ +G LR + ++ L+ +V C +S
Sbjct: 152 SAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLS 211
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTLP 149
+ H Y+EANR+ D N P I+ ++++DV G P
Sbjct: 212 KDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAGSAYP 267
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ R+ +++ E+ +G L+ ++ + L+ +V C FIS
Sbjct: 194 SAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFIS 253
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTL 152
R H Y+EANR+ D N L P + +L +D G T+
Sbjct: 254 RDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATV 308
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LWG +GL +AW++ R+ +++ E+ +G L+ ++ + L+ +V C FIS
Sbjct: 194 SAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFIS 253
Query: 286 R-------HEYQEANRVVD---NXXXXXXXXXXXLVYPPSIISVLLNEDVKGVTL 152
R H Y+EANR+ D N L P + +L +D G T+
Sbjct: 254 RDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATV 308
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Frame = -1
Query: 466 SVPMEGLWGTLHGLQLAWDKSFLRVILKLGFELAIGLLRKHLSTTYHLANIVFAC*SFIS 287
S P+ LW +GL +AW++ R+ +++ EL +G L +S ++ L+ +V C FIS
Sbjct: 674 SAPLAELWRVYYGLYIAWERKITRLEVEVDSELVVGFLTTWISDSHPLSFLVRLCYGFIS 733
Query: 286 R-------HEYQEANRVVD 251
R H Y+EANR+ D
Sbjct: 734 RDWIVRISHVYREANRLAD 752