BLASTX nr result
ID: Rheum21_contig00019288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00019288
(273 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein A... 70 4e-10
ref|XP_004301685.1| PREDICTED: putative ribonuclease H protein A... 66 5e-09
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana] 64 2e-08
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 64 2e-08
gb|EMJ22168.1| hypothetical protein PRUPE_ppb022841mg, partial [... 64 2e-08
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 64 2e-08
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 64 3e-08
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 64 3e-08
gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana] 64 3e-08
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana] 63 4e-08
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 63 5e-08
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 63 5e-08
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 62 6e-08
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 62 6e-08
gb|ABK28199.1| unknown [Arabidopsis thaliana] 62 6e-08
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 62 6e-08
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 62 1e-07
ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica] gi|... 61 2e-07
ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein A... 60 3e-07
gb|EMJ12351.1| hypothetical protein PRUPE_ppa027042mg, partial [... 60 4e-07
>ref|XP_004292270.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 224
Score = 69.7 bits (169), Expect = 4e-10
Identities = 34/91 (37%), Positives = 49/91 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS +A+ + +D +PL+SL+T Q LSR W + H YRE+N VA LAS G
Sbjct: 131 EVDSLVAVKLVLSVIDHLHPLYSLITNCQESLSRNWNVSLIHDYRESNSVADLLASIGHG 190
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPRM 1
+ +GC +PP + L D + PR+
Sbjct: 191 YELGCRFFSSPPNDVIPLLEADYSGFSKPRL 221
>ref|XP_004301685.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 149
Score = 65.9 bits (159), Expect = 5e-09
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS +A+ + +D +PL+SL+ Q FLSR W + H+YRE+N VA LAS G
Sbjct: 54 EVDSLVAVKLVLSVIDHLHPLYSLIANCQEFLSRNWNVSLIHVYRESNSVADLLASIGHG 113
Query: 93 FVVGCNILDAPPFGALSFLSDDV 25
+ C +PP + L D+
Sbjct: 114 YEPRCRFFSSPPNDVIPLLEADL 136
>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
Length = 253
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL +D +PL LV L LS++W ++ H+YREAN +A LA++ F
Sbjct: 160 EIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFF 219
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G ++ ++ P +S + DDV PR
Sbjct: 220 LPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 249
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL +D +PL LV L LS++W ++ H+YREAN +A LA++ F
Sbjct: 179 EIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFF 238
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G ++ ++ P +S + DDV PR
Sbjct: 239 LPLGFHLFNSTPDIVMSIVHDDVAGSAYPR 268
>gb|EMJ22168.1| hypothetical protein PRUPE_ppb022841mg, partial [Prunus persica]
Length = 173
Score = 63.9 bits (154), Expect = 2e-08
Identities = 32/91 (35%), Positives = 47/91 (51%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS+ A++ L P +PLFS++ + +EW HI+R N VA LAS
Sbjct: 80 ECDSKSAVVMLQNPTSPTHPLFSIINCCYLLIQKEWCCSIKHIFRGHNFVADSLASMSHD 139
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPRM 1
+G ++LD+ P + L+ D RS PRM
Sbjct: 140 LPLGLHVLDSTPSVVVELLAADARSLACPRM 170
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 63.9 bits (154), Expect = 2e-08
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS++ + FL + +PL L+ L FLS+ W ++ H+YREAN +A LA++ FS
Sbjct: 228 EVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFS 287
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G ++L++ P S L DDV + PR
Sbjct: 288 LSLGLHLLESRPDVVSSILLDDVAGVSYPR 317
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS L + FL + +PL LV L F+S++W ++ H+YREAN +A LA++ F+
Sbjct: 583 EVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFT 642
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
G +LD+ P S L +DV + PR
Sbjct: 643 LPFGFLLLDSCPEHVSSILLEDVMGTSFPR 672
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 63.5 bits (153), Expect = 3e-08
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
+ D +L + FL+ + +PL LV L Q F +R+W ++ H+YREAN +A LA++ F+
Sbjct: 1138 DLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFT 1197
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + DA P G L DV PR
Sbjct: 1198 LPLGLHCFDACPEGVRLLLLADVNGTEFPR 1227
>gb|AAC67202.1| hypothetical protein [Arabidopsis thaliana]
Length = 117
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS L + FL + +PL LV L LS++W ++ H+YREAN +A LA++ FS
Sbjct: 24 EIDSALVVDFLKTGISETHPLSFLVRLCYGLLSKDWLVRISHVYREANQLADGLANYAFS 83
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G ++ D+ P L L++D R PR
Sbjct: 84 LPLGLHLFDSCPDCMLHCLAEDDRGAAHPR 113
>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
Length = 233
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/91 (36%), Positives = 50/91 (54%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL + +PL LV + FLSR+W ++ H+YREAN +A LA++ F
Sbjct: 140 EVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYREANRLADGLANYAFD 199
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPRM 1
+G + +PP S L DD + PR+
Sbjct: 200 LPLGYHAFASPPNSLDSILRDDELGISVPRL 230
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 62.8 bits (151), Expect = 5e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL ++ +PL LV L F+SR+W ++ H+YREAN +A LA++ FS
Sbjct: 221 EVDSEIVVGFLKIXINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFS 280
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + L P L DD T R
Sbjct: 281 LPLGFHSLSLVPDSLRFILLDDTSGATVSR 310
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 62.8 bits (151), Expect = 5e-08
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = -1
Query: 267 DSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFSFV 88
DS L + FL+ + + +PL LV L Q F +R+W ++ H+YREAN +A LA++ F
Sbjct: 879 DSELVVGFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFFLP 938
Query: 87 VGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + + P L FL +D + PR
Sbjct: 939 LGFHCFEICPEDVLLFLVEDANGTSFPR 966
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL + +PL LV L FL ++W ++ H+YREAN +A LA++ FS
Sbjct: 636 EVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFS 695
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + D P S L +D T PR
Sbjct: 696 LSLGFHSFDLVPDAMSSLLREDTLGSTRPR 725
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL + +PL LV L FL ++W ++ H+YREAN +A LA++ FS
Sbjct: 527 EVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFS 586
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + D P S L +D T PR
Sbjct: 587 LSLGFHSFDLVPDAMSSLLREDTLGSTRPR 616
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL ++ +PL LV L F+SR+W ++ H+YREAN +A LA++ FS
Sbjct: 221 EVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFS 280
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + L P L DD T R
Sbjct: 281 LPLGFHSLSLVPDSLRFILLDDTSGATVSR 310
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + + FL ++ +PL LV L F+SR+W ++ H+YREAN +A LA++ FS
Sbjct: 221 EVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFS 280
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G + L P L DD T R
Sbjct: 281 LPLGFHSLSLVPDSLRFILLDDTSGATVSR 310
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DSR + ++ SL+T Q + R+W IQ HIYREAN + FLA++ +
Sbjct: 675 EVDSRCILQLVSNSNPTINEHLSLITAIQELIGRDWLIQMNHIYREANAASDFLATYSLA 734
Query: 93 FVVGCNILDAPPFGALSFLSDDV 25
F VG + +PP L+ L++DV
Sbjct: 735 FPVGLHYFQSPPLNLLNILNNDV 757
>ref|YP_006666138.1| RnaseH (mitochondrion) [Malus domestica]
gi|401661941|emb|CBX33402.1| rnaseH (mitochondrion)
[Malus domestica]
Length = 153
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS + +N+ + +PL +L+ Q +L +W + HIYRE N A +LAS G +
Sbjct: 60 EVDSATVVTLVNQQDNSLHPLHTLIRGCQAYLKMDWHCKLSHIYREKNFSADYLASIGLT 119
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+ +G +PP G + FL +D PR
Sbjct: 120 YDLGYFESQSPPPGCIPFLFEDSLGYARPR 149
>ref|XP_006475107.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E DS+ + ++ SL+ Q + R+W IQ HIYREAN A FLA++ S
Sbjct: 153 EVDSKCILQLVSSSNPTINEHLSLIKAIQELIGRKWLIQMNHIYREANAAADFLATYSLS 212
Query: 93 FVVGCNILDAPPFGALSFLSDDV 25
F VG + +PP L+ L++DV
Sbjct: 213 FPVGLHYFQSPPLNMLNILNNDV 235
>gb|EMJ12351.1| hypothetical protein PRUPE_ppa027042mg, partial [Prunus persica]
Length = 192
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = -1
Query: 273 ETDSRLAILFLNKPMDRCYPLFSLVTLGQCFLSREWEIQFCHIYREANIVAGFLASFGFS 94
E+DS +A+ LNK +D +PL +L+ Q ++ + W H+Y E N+VA LA+ G
Sbjct: 100 ESDSAIAVHLLNKTVDALHPLATLLWGCQDYIKKCWGCSIYHVYCECNMVADRLANLGSC 159
Query: 93 FVVGCNILDAPPFGALSFLSDDVRSRTTPR 4
+G PP SF+ DD+R PR
Sbjct: 160 LDLGLCTFQMPPESIWSFVVDDLRGLCRPR 189