BLASTX nr result
ID: Rheum21_contig00018921
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00018921
(2151 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268... 543 e-151
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 536 e-149
gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus pe... 536 e-149
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 536 e-149
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 535 e-149
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 529 e-147
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 528 e-147
gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma c... 522 e-145
gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma c... 520 e-144
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309... 517 e-144
gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Th... 505 e-140
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 503 e-139
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu... 501 e-139
gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma c... 499 e-138
gb|EXB82464.1| Cleavage and polyadenylation specificity factor s... 496 e-137
ref|XP_002312652.1| RNA recognition motif-containing family prot... 487 e-134
gb|EOY00741.1| RNA-binding family protein isoform 6 [Theobroma c... 484 e-134
ref|XP_002315647.1| RNA recognition motif-containing family prot... 478 e-132
ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [A... 397 e-107
ref|XP_006417146.1| hypothetical protein EUTSA_v10007191mg [Eutr... 349 3e-93
>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
uncharacterized protein LOC100268141 isoform 2 [Vitis
vinifera]
Length = 647
Score = 543 bits (1398), Expect = e-151
Identities = 302/629 (48%), Positives = 356/629 (56%), Gaps = 25/629 (3%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAI A YNDVNVG+G Q H++ S G Q + P
Sbjct: 25 GAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHRSEAPAPSGVMAGGPFQAHKTDVPP 84
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVEN--- 551
+ E + L GV ++ KY S F E+K AV+G E+GS HL V
Sbjct: 85 QKLEAGTSQGLIIPGVSIEGKY--SNPHFHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGR 142
Query: 552 ---VIHGPPSGNLGFQGPNTMGQNSAGRGS----------TP----GYGVPMTVPDIPNN 680
+ H NLGFQG + Q + S TP G G P VP + +N
Sbjct: 143 VLEMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSN 202
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN + +N +RP V+NG+TM+FVGELHWWTTDAELE VLSQYG++KEIKF
Sbjct: 203 QMGMNVN--VNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKF 260
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEFY+++AAAACKE MNG++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 261 FDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK 320
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
TQ Q SQ QGRR NDG GRGGGMN GDAGRNYGR W
Sbjct: 321 TQAQ--SQSQGRRPMNDGVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMR 378
Query: 1221 ----QMAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMG 1388
+ AKN N AG+G A G YGQG+ GP FG G+MHPQ MMG GFDPT+MG
Sbjct: 379 GRGGAVGAKNMVGNTAGVG--ASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMG 436
Query: 1389 RGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXH 1568
RG YG VNTMG+ GVAPHVNPAFFGRGM N H
Sbjct: 437 RGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGH 496
Query: 1569 PGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSS 1748
MW D SMGGW EEH +RTRE E EK RSN SREKER S
Sbjct: 497 HAGMWTDTSMGGWGGEEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGS 556
Query: 1749 QRDYPGNSEKRHRAENEQDWDRSDRSHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXX 1928
+RD+ GNSE+RHR E EQDW+RSD+ HR RE+KDGY++HR ++R+ NE
Sbjct: 557 ERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSR 616
Query: 1929 XXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
AV ++DHRS SRD DYGKRRR+P
Sbjct: 617 SRSRSRAVADEDHRSRSRDGDYGKRRRLP 645
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 536 bits (1381), Expect = e-149
Identities = 301/633 (47%), Positives = 361/633 (57%), Gaps = 29/633 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVGDGL QF Q S+ GNG +Q + + PE
Sbjct: 28 GAIPALADEELMGEDDEYDDLYNDVNVGDGLLQFQQPEAPPPSAGVGNGRLQVKKTDVPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALV----- 545
+ + V + GV ++ KY +G FP Q AV +GSG + A V
Sbjct: 88 QQVQAGVSQGSNVPGVSVEGKYTNAGTHFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGS 147
Query: 546 -ENVIHGPPSGNLGFQG-----PNTMGQNSAGRGSTPGYGVPMTVPD--------IPNNQ 683
+ H N+GFQG P T S G P+ P IP NQ
Sbjct: 148 VQETTHDAHVRNMGFQGSTSGPPRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPANQ 207
Query: 684 IAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFF 863
+ ++N + +N +RPP+ENG TM+FVGELHWWTTDAELE VLSQYG++KEIKFF
Sbjct: 208 MGVNIN--VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFF 265
Query: 864 DERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKT 1043
DERASGKSKGYCQVEF+++AAAAACK+ MNGHVFNGR CVVAFAS QTLKQ+GA+ NK
Sbjct: 266 DERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKN 325
Query: 1044 QTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXXQ 1223
Q QP SQ QGRR NDG GRGG MN+ +GD GRN+GR W +
Sbjct: 326 QGQPQSQTQGRRPMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGR 385
Query: 1224 --MAAKNPFMNPAGMGNG---AVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMG 1388
M AKN + +G G+G A G YGQG+ GP FG GMMHPQ MMG GFDPT+MG
Sbjct: 386 GPMGAKNMMGSSSGAGSGAGPAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMG 444
Query: 1389 RGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPN-XXXXXXXXXXXX 1565
RG GYG VN MG+ GVAPHVNPAFF RGM N
Sbjct: 445 RGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGP 504
Query: 1566 HPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERS 1745
HPG MW D SMGGW EEH +RTRE EA EKGARS A SREK+R
Sbjct: 505 HPG-MWTDSSMGGWVGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRG 563
Query: 1746 SQRDYPGNSEKRHRAENEQDWDRSD---RSHRNREDKDGYQEHRSKDRELGNEXXXXXXX 1916
S+RD+ GN+++RHR E EQDWDRS+ R HR+RE+KD Y++ R +DR+ +
Sbjct: 564 SERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGP 623
Query: 1917 XXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+P++DHRS SRD DYGKRRR+P
Sbjct: 624 SSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLP 656
>gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
Length = 630
Score = 536 bits (1381), Expect = e-149
Identities = 297/617 (48%), Positives = 359/617 (58%), Gaps = 13/617 (2%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAI A YNDVNV +G Q H++ GNGG+Q Q + E
Sbjct: 25 GAISALADEEPMVEDDEYDDLYNDVNVREGFLQMHRSEAPLPPGGVGNGGLQAQKTDVTE 84
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVIH 560
R + V ++ GV + KY + A FPEQ+ + + E+GS + + NV
Sbjct: 85 TRVQAGVSQESKIPGVSVQGKYSSAVAQFPEQQGQPPVAKEPELGSTGYGSTTMPPNV-G 143
Query: 561 GPPS---GNLGFQGPNTMGQNSAGRGSTPGYGVPMTVPDIPNNQIAASVNEIASHTGGGD 731
G S G + +M +AG P V +P NQI+ VN A+ +
Sbjct: 144 GDSSDITGKTALESVPSMNSGTAG---------PTGVTQMPTNQISIKVN--ANRPMFNE 192
Query: 732 NIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQVEF 911
N +RPPVENGSTM+FVGELHWWTTDAELE VLSQYG++KEIKFFDERASGKSKGYCQVEF
Sbjct: 193 NQIRPPVENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF 252
Query: 912 YESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRNTND 1091
++ AAA ACKE M+G++FNGRACVVAFAS QTLKQ+GA+ +K+Q Q SQ GRR N+
Sbjct: 253 HDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMNE 312
Query: 1092 GAGRGGGMNFPAGD-AGRNYGRASW----XXXXXXXXXXXXXXXXXXXQMAAKNPFMNPA 1256
G GRGGG+N+ GD GRN+GR W M AKN NPA
Sbjct: 313 GVGRGGGVNYQTGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRGRGGAMGAKNMAGNPA 372
Query: 1257 GMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRGAGYGSXXXXXXXXX 1436
G+G GA G YGQG+ GP FG GMM+PQ MMG GFDPT+MGRG GYG
Sbjct: 373 GVGTGA-NGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMGRGGGYGGFPGPAFPGM 431
Query: 1437 XXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGWPAE 1616
VNTMG+ GVAPHVNPAFFGRGM N H MW DPSMGGW +
Sbjct: 432 LSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGHHAGMWNDPSMGGWGGD 491
Query: 1617 EHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDYPGNSEKRHRAEN 1796
EH +RTRE EA EKG RSNA SRE+ER S+RD+ GNSE+RHR E
Sbjct: 492 EHGRRTRESSYGGDDGASEYGYGEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDER 551
Query: 1797 EQDWDRSD----RSHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXXXXXXXXAVPEDD 1964
EQDWDRS+ R HR +E+KD Y++HR ++R++G E A+PEDD
Sbjct: 552 EQDWDRSERGEHREHRYKEEKDSYRDHRQRERDVGYEDDWDRGQSSSRPRSRSKAMPEDD 611
Query: 1965 HRSYSRDADYGKRRRIP 2015
HRS SRD DYGKRRR+P
Sbjct: 612 HRSRSRDVDYGKRRRLP 628
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein, putative
[Ricinus communis]
Length = 644
Score = 536 bits (1381), Expect = e-149
Identities = 292/608 (48%), Positives = 367/608 (60%), Gaps = 25/608 (4%)
Frame = +3
Query: 267 YNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPEPRREVDVPRDLGYGGVKMDKY 446
YNDVN+G+ Q H++ + + GNGG Q +NS + R E + L GV ++
Sbjct: 45 YNDVNIGENFLQMHRSEAPPAPPSVGNGGFQPRNSN--DLRVESGGSQGLNIPGVAVESK 102
Query: 447 QISGASFPEQKAEVRAVQGSEVGS-GKHLGAALVEN-----VIHGPPSGNLGFQG----P 596
+G FPEQ V+G E+GS G G+++ + + + + N+GFQG P
Sbjct: 103 YSTGTHFPEQN-----VKGPEIGSVGYPDGSSIAQKTRVMEMTNDSQARNMGFQGSTSGP 157
Query: 597 NTMGQNSAGRGS--------TPGYGVPMTVPDIPNNQIAASVNEIASHTGGGDNIVRPPV 752
+ +G + + + P GVP +P +P +Q+ ++N + + +N +RPP+
Sbjct: 158 SNIGVDPSDMNNKISNDPTPVPNAGVPRVIPQLPASQM--NMNMDTNRSATNENQIRPPL 215
Query: 753 ENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQVEFYESAAAA 932
ENGSTM++VGELHWWTTDAELE+VLSQYG +KEIKFFDERASGKSKGYCQVEFY++AAAA
Sbjct: 216 ENGSTMLYVGELHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAA 275
Query: 933 ACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRNTNDGAGRGGG 1112
ACKE MNGH+FNGRACVVAFAS QTLKQ+GA+ NK Q QP SQ QGRR NDGAGRGG
Sbjct: 276 ACKEGMNGHLFNGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMNDGAGRGGN 335
Query: 1113 MNFPAGDAGRNYGRASW----XXXXXXXXXXXXXXXXXXXQMAAKNPFMNPAGMGNGAVA 1280
MN+ GDAGRN+GR W M AKN G+G+GA
Sbjct: 336 MNYQGGDAGRNFGRGGWGRGGQGILNRGPGGGGRMGGRGGSMGAKNIVGGAGGVGSGANG 395
Query: 1281 GNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRGAGYGSXXXXXXXXXXXXXXXVN 1460
G YGQG+ GPAFG M+ PQ+MM GFDPT+MGRGAGYG VN
Sbjct: 396 GGYGQGLAGPAFGGPAGAMLPPQSMMRAGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVN 455
Query: 1461 TMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGWPAEEHAQRTRE 1640
MG+ GVAPHVNPAFFGRGM PN MW D SMGGW EE +RTRE
Sbjct: 456 AMGLAGVAPHVNPAFFGRGMAPNGMGMMGPSGMDGPNAGMWSDTSMGGW-GEEPGRRTRE 514
Query: 1641 XXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDYPGNSEKRHRAENEQDWDRSD 1820
E EKGARS+A SREKER+S+RD+ GNS++RHR + E DWDRS+
Sbjct: 515 SSYGGDDGASEYGYGEVNHEKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSE 574
Query: 1821 R---SHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXXXXXXXXAVPEDDHRSYSRDAD 1991
R HR RE+K+ Y++HR ++R+ G E AVPE+D+RS SRDAD
Sbjct: 575 REHKEHRYREEKESYRDHRQRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDAD 634
Query: 1992 YGKRRRIP 2015
YGKRRR+P
Sbjct: 635 YGKRRRLP 642
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 535 bits (1377), Expect = e-149
Identities = 300/634 (47%), Positives = 363/634 (57%), Gaps = 30/634 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVGDGL QF Q S+ GNG +Q + + PE
Sbjct: 28 GAIPALADEELMGEDDEYDDLYNDVNVGDGLLQFQQPEAPPPSAGVGNGRLQVKKTDVPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALV----- 545
+ + V + GV ++ KY +G FP Q AV +GSG + A V
Sbjct: 88 QQVQAGVSQGSNVPGVSVEGKYTNAGTHFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGS 147
Query: 546 -ENVIHGPPSGNLGFQGPNTMGQNSAG------RGSTPGYGVPMTVPD--------IPNN 680
+ H N+GFQG +T G + G G P+ P IP N
Sbjct: 148 VQETTHDAHVRNMGFQG-STSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPAN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ ++N + +N +RPP+ENG TM+FVGELHWWTTDAELE VLSQYG++KEIKF
Sbjct: 207 QMGVNIN--VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKF 264
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEF+++AAAAACK+ MNGHVFNGR CVVAFAS QTLKQ+GA+ NK
Sbjct: 265 FDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNK 324
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q QP SQ QGRR NDG GRGG MN+ +GD GRN+GR W
Sbjct: 325 NQGQPQSQTQGRRPMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRG 384
Query: 1221 Q--MAAKNPFMNPAGMGNG---AVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFM 1385
+ M A+N + +G G+G A G YGQG+ GP FG GMMHPQ MMG GFDPT+M
Sbjct: 385 RGPMGARNMIGSSSGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYM 443
Query: 1386 GRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPN-XXXXXXXXXXX 1562
GRG GYG VN MG+ GVAPHVNPAFF RGM N
Sbjct: 444 GRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDG 503
Query: 1563 XHPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKER 1742
HPG MW D SMGGW EEH +RTRE EA EKGARS A SREK+R
Sbjct: 504 PHPG-MWTDSSMGGWLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDR 562
Query: 1743 SSQRDYPGNSEKRHRAENEQDWDRSD---RSHRNREDKDGYQEHRSKDRELGNEXXXXXX 1913
S+RD+ GN+++RHR E EQDWDRS+ R HR+RE+KD Y++ R +DR+ +
Sbjct: 563 GSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRG 622
Query: 1914 XXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+P++DHRS SRD DYGKRRR+P
Sbjct: 623 PSSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLP 656
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 529 bits (1362), Expect = e-147
Identities = 299/634 (47%), Positives = 361/634 (56%), Gaps = 30/634 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YND+NVGDGL QF Q S+ GNG +Q + + PE
Sbjct: 25 GAIPALADEELMGEDDEYDDLYNDINVGDGLLQFQQPEAPPPSAGVGNGRLQVKKTDVPE 84
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALV----- 545
R +V + GV ++ KY +G+ FP Q AV +GSG + A V
Sbjct: 85 QRVQVGGSQGSNIPGVSVEGKYTNAGSDFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGS 144
Query: 546 -ENVIHGPPSGNLGFQG----PNTMG---QNSAGRGST-------PGYGVPMTVPDIPNN 680
+ H N+GFQG P+ G N GR + PG P IP N
Sbjct: 145 VQETTHDAHVRNMGFQGSTSGPSRTGVDPSNMPGRAANEPAPVLNPGAAGPQGAL-IPAN 203
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ + N + +N +RPP+ENG TM+FVGELHWWTTDAELE VLSQYG+ KEIKF
Sbjct: 204 QMGVNAN--VNRVMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRAKEIKF 261
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEF+++AAAAACK+ MNGHVFNGR CVVAFAS QTLKQ+GA+ NK
Sbjct: 262 FDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNK 321
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q QP SQ QG R NDG GRGG N+ +GD GRN+GR W
Sbjct: 322 NQGQPQSQNQGSRPMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNG---AVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFM 1385
+ M A+N + +G G+G A G YGQG+ GP FG GMMHPQ MMG GFDPT+M
Sbjct: 382 RGPMGARNMIGSSSGAGSGAGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYM 440
Query: 1386 GRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPN-XXXXXXXXXXX 1562
GRG GYG VN MG+ GVAPHVNPAFF RGM N
Sbjct: 441 GRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDG 500
Query: 1563 XHPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKER 1742
HPG MW D SMGGW EEH +RTRE EA+ EKGARS SREK+R
Sbjct: 501 PHPG-MWTDSSMGGWVGEEHGRRTRESSYGGDDGASDYGYGEASHEKGARSTTASREKDR 559
Query: 1743 SSQRDYPGNSEKRHRAENEQDWDRSD---RSHRNREDKDGYQEHRSKDRELGNEXXXXXX 1913
S+RD+ GN+++RHR E EQDWDRS+ R HR+RE+KD Y++ R +DR+ +
Sbjct: 560 GSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRG 619
Query: 1914 XXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+P++DHRS SRD DYGKRRR+P
Sbjct: 620 QSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLP 653
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 528 bits (1361), Expect = e-147
Identities = 299/634 (47%), Positives = 360/634 (56%), Gaps = 30/634 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVGDGL QF Q S+ GNG +Q + + PE
Sbjct: 25 GAIPALADEELMGEDDEYDDLYNDVNVGDGLLQFQQPEAPPPSAGVGNGRLQVKKTDVPE 84
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALV----- 545
R +V + GV ++ KY +G+ FP Q AV +GSG + A V
Sbjct: 85 QRVQVGGSQGSNIPGVSVEGKYTNAGSHFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGS 144
Query: 546 -ENVIHGPPSGNLGFQGPNTMGQNSAG------RGSTPGYGVPMTVPD--------IPNN 680
+ H N+GFQG +T G + G G P+ P IP N
Sbjct: 145 VQETTHDAHVRNMGFQG-STSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPAN 203
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ + N + +N +RPP+ENG TM+FVGELHWWTTDAELE VLSQYG+ KEIKF
Sbjct: 204 QMGVNAN--VNRVMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRAKEIKF 261
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEF+++AAAAACK+ MNGHVFNGR CVVAFAS QTLKQ+GA+ NK
Sbjct: 262 FDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNK 321
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q QP SQ QG R NDG GRGG N+ +GD GRN+GR W
Sbjct: 322 NQGQPQSQNQGSRPMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNG---AVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFM 1385
+ M A+N + +G G+G A G YGQG+ GP FG GMMHPQ MMG GFDPT+M
Sbjct: 382 RGPMGARNMIGSSSGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYM 440
Query: 1386 GRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPN-XXXXXXXXXXX 1562
GRG GYG VN MG+ GVAPHVNPAFF RGM N
Sbjct: 441 GRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDG 500
Query: 1563 XHPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKER 1742
HPG MW D SMGGW EEH +RTRE EA EKGARS A SREK+R
Sbjct: 501 PHPG-MWTDSSMGGWLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDR 559
Query: 1743 SSQRDYPGNSEKRHRAENEQDWDRSD---RSHRNREDKDGYQEHRSKDRELGNEXXXXXX 1913
S+RD+ GN+++RHR E EQDWDRS+ R HR+RE+KD Y++ R +DR+ +
Sbjct: 560 GSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRG 619
Query: 1914 XXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+P++DHRS SRD DYGKRRR+P
Sbjct: 620 QSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLP 653
>gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708838|gb|EOY00735.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 653
Score = 522 bits (1345), Expect = e-145
Identities = 297/631 (47%), Positives = 360/631 (57%), Gaps = 27/631 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q ++ G+ G+Q Q + APE
Sbjct: 28 GAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQLQRSEAPPQPGGMGSTGLQAQKNEAPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVEN--- 551
PR E + L GV + K+ A +PEQ + AV E+GSG + +
Sbjct: 88 PRGEAGGSQGLNIPGVSVQGKHLNVTARYPEQDGQP-AVSRPEMGSGSYPSGTSISQKGR 146
Query: 552 VIHGPPSG---NLGFQG-----------PNTMGQ---NSAGRGSTPGYGVPMTVPDIPNN 680
V+ G N+GFQG P+ + Q N + G G P P +P N
Sbjct: 147 VMEGTQDTQVKNMGFQGLSSASHKVGIDPSGVPQKIANVPAQSLNSGTGGPQGAPHVPPN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN H +N VRPP+ENG TM+FVGELHWWTTDAELE VLSQYG++KEIKF
Sbjct: 207 QMGLNVN----HPMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEFY+ A+AAACKE M+G++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 263 FDERASGKSKGYCQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q Q +QPQGRR NDG GRGG MN+ +GDAGRNYGR W
Sbjct: 323 NQGQSQAQPQGRR-PNDGLGRGGNMNYQSGDAGRNYGRGGWGRGGQGVVNRSGVGGPMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGAVAG-NYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGR 1391
+ + KN + AG+GNGA G YGQG GP FG GMMHPQ MMG GFDPT+MGR
Sbjct: 382 RGGVGVKNMVGSSAGVGNGANGGAAYGQGPAGPPFGGPAGGMMHPQGMMGAGFDPTYMGR 441
Query: 1392 GAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHP 1571
G YG VNT+G+ GVAPHVNPAFFGRGM PN
Sbjct: 442 GGSYGGFPGPGFPGMLPSFPAVNTLGLAGVAPHVNPAFFGRGMAPNGMGMMGGPGMDGPH 501
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
MW D SMGGW +EH +RTRE +A EKG RS+ SREKER S
Sbjct: 502 VGMWTDTSMGGWGGDEHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSD 560
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRN---REDKDGYQEHRSKDRELGNEXXXXXXXXX 1922
R++ GNS++RHR E E+DWDRS+R HR RE+KD Y+EHR ++R+L +
Sbjct: 561 REWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDSYREHRHRERDLDYDDDLDRGQSS 620
Query: 1923 XXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+PE+ RS SRD DYGKRRR+P
Sbjct: 621 SRSRRRSHAMPEEQRRSRSRDVDYGKRRRLP 651
>gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708840|gb|EOY00737.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708841|gb|EOY00738.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 652
Score = 520 bits (1338), Expect = e-144
Identities = 296/631 (46%), Positives = 361/631 (57%), Gaps = 27/631 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q ++ G+ G++ Q + APE
Sbjct: 28 GAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQLQRSEAPLQPGGLGSTGLKAQRNEAPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENV-- 554
PR E + L GV + K+ A +PE K E AV E+ SG + + +
Sbjct: 88 PRVEAGGSQGLNIPGVSVQGKHPNVSARYPE-KEEQPAVNRPEMVSGSYPSGSSISQKGS 146
Query: 555 ----IHGPPSGNLGFQG-----------PNTMGQ---NSAGRGSTPGYGVPMTVPDIPNN 680
H NLGFQG P+ + Q N + G G P P +P N
Sbjct: 147 VTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN H +N V+PP+ENG TM+FVGELHWWTTDAELE VLSQYG+LKEIKF
Sbjct: 207 QMGTNVN----HPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDE+ASGKSKGYCQVEFY+ ++AA CKE MNG++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 263 FDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q Q +QPQGRR N+G GRGG +N+ +GDAGRNYGR W
Sbjct: 323 NQGQSQAQPQGRR-PNEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGA-VAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGR 1391
+ + KN AG+GNGA AG YGQG GPAFG GMMHPQ MMG GFDPT+M R
Sbjct: 382 RGGVGVKNMVGISAGVGNGANGAGAYGQG-PGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440
Query: 1392 GAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHP 1571
G GYG VNTMG+ GVAPHVNPAFFGRGM PN
Sbjct: 441 GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPH 500
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
MW D SMGGW +EH +RTRE +A EKG RS+ SREKER S+
Sbjct: 501 AGMWTDASMGGWGGDEHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSE 559
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRN---REDKDGYQEHRSKDRELGNEXXXXXXXXX 1922
R++ GNS++RHR E EQDWDRS+R HR RE+KD Y+EHR ++R+L +
Sbjct: 560 REWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYREHRHRERDLDYDDDWDRGQSS 619
Query: 1923 XXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+PE++HRS SRD DYGK+RR+P
Sbjct: 620 SRSRRRSHAMPEEEHRSRSRDVDYGKKRRLP 650
>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
subsp. vesca]
Length = 646
Score = 517 bits (1332), Expect = e-144
Identities = 290/627 (46%), Positives = 352/627 (56%), Gaps = 23/627 (3%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q H+ + GNGG+Q Q + PE
Sbjct: 28 GAIPALADEEPMVEDDEYDDLYNDVNVGEGFLQMHRPEPPLPPAGVGNGGLQAQKNNVPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVIH 560
R + +++ G ++ KY +S PEQK + E+ S K V + H
Sbjct: 88 QRVQGGASQEVKNPGFSVEGKY----SSVPEQKDQPPVSVVPEMASQK----GRVMEMTH 139
Query: 561 GPPSGNLGFQGPNTMGQNSAGRGS--------------TPGYGVPMTVPDIPNNQIAASV 698
N+GFQG TM N S G P V +P NQ+ +
Sbjct: 140 DAQVRNMGFQGAATMQSNVVADSSDLTGKIANGPIPSMNSGSNGPPAVQQMPANQMNMKI 199
Query: 699 NEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDERAS 878
N + +N +RPPVENGS +FVGELHWWTTDAELE VLSQ+G++KEIKFFDERAS
Sbjct: 200 N--VNRPMVNENQIRPPVENGSATLFVGELHWWTTDAELEGVLSQFGRIKEIKFFDERAS 257
Query: 879 GKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQPL 1058
GKSKGYCQV+FY+ AAA+ACKE M+G+VFNGRACVVAFAS+QTLKQ+G + NK+Q Q
Sbjct: 258 GKSKGYCQVDFYDPAAASACKEGMDGYVFNGRACVVAFASSQTLKQMGDSYVNKSQGQVQ 317
Query: 1059 SQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRA-SW---XXXXXXXXXXXXXXXXXXXQM 1226
+QPQGRR NDGAGRGG MNF GD GRN+GR +W M
Sbjct: 318 TQPQGRRPMNDGAGRGGNMNFQGGDTGRNFGRGNNWGRGGQGVLNRGPGGGGPGRGRGAM 377
Query: 1227 AAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRGAGYG 1406
A+N N AG+G GA G YGQG+ GP FG GMM+ MMGPGFDPT+MGRG GYG
Sbjct: 378 GARNMVGNNAGVGTGANGGGYGQGLGGPGFGGPVGGMMNAPGMMGPGFDPTYMGRGGGYG 437
Query: 1407 SXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLMWG 1586
VN MG+ GVAPHVNPAFFGRGM N H MW
Sbjct: 438 GFPGPGFPGMLPQFPGVNAMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMEGHHAPMWN 497
Query: 1587 DPSMGGWPAEEHAQRTRE-XXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDYP 1763
DPSM GW EE +RTRE EA EK RS+A RE+ER S+R++
Sbjct: 498 DPSMAGWTGEEQDRRTRESSYGGDDGGSEYGNYGEANHEKPVRSSAAPRERERESEREWT 557
Query: 1764 GNSEKRHRAENEQDWDRSDRSHRN---REDKDGYQEHRSKDRELGNEXXXXXXXXXXXXX 1934
G SE+RHR E EQDWDRS+R HR +E+KD Y++HR ++R++ E
Sbjct: 558 GTSERRHRDEREQDWDRSEREHREPRYKEEKDSYRDHRRRERDVAYEDDRDRGHSSSRPR 617
Query: 1935 XXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A+PEDDHRS SRD DYGKRRR+P
Sbjct: 618 SRSKAMPEDDHRSRSRDVDYGKRRRLP 644
>gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
Length = 656
Score = 505 bits (1300), Expect = e-140
Identities = 290/628 (46%), Positives = 355/628 (56%), Gaps = 27/628 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q ++ G+ G++ Q + APE
Sbjct: 28 GAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQLQRSEAPLQPGGLGSTGLKAQRNEAPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENV-- 554
PR E + L GV + K+ A +PE K E AV E+ SG + + +
Sbjct: 88 PRVEAGGSQGLNIPGVSVQGKHPNVSARYPE-KEEQPAVNRPEMVSGSYPSGSSISQKGS 146
Query: 555 ----IHGPPSGNLGFQG-----------PNTMGQ---NSAGRGSTPGYGVPMTVPDIPNN 680
H NLGFQG P+ + Q N + G G P P +P N
Sbjct: 147 VTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN H +N V+PP+ENG TM+FVGELHWWTTDAELE VLSQYG+LKEIKF
Sbjct: 207 QMGTNVN----HPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDE+ASGKSKGYCQVEFY+ ++AA CKE MNG++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 263 FDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q Q +QPQGRR N+G GRGG +N+ +GDAGRNYGR W
Sbjct: 323 NQGQSQAQPQGRR-PNEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGA-VAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGR 1391
+ + KN AG+GNGA AG YGQG GPAFG GMMHPQ MMG GFDPT+M R
Sbjct: 382 RGGVGVKNMVGISAGVGNGANGAGAYGQG-PGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440
Query: 1392 GAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHP 1571
G GYG VNTMG+ GVAPHVNPAFFGRGM PN
Sbjct: 441 GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPH 500
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
MW D SMGGW +EH +RTRE +A EKG RS+ SREKER S+
Sbjct: 501 AGMWTDASMGGWGGDEHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSE 559
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRN---REDKDGYQEHRSKDRELGNEXXXXXXXXX 1922
R++ GNS++RHR E EQDWDRS+R HR RE+KD Y+EHR ++R+L +
Sbjct: 560 REWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYREHRHRERDLDYDDDWDRGQSS 619
Query: 1923 XXXXXXXXAVPEDDHRSYSRDADYGKRR 2006
A+PE++HRS SRD Y + +
Sbjct: 620 SRSRRRSHAMPEEEHRSRSRDVGYREEK 647
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 503 bits (1296), Expect = e-139
Identities = 290/628 (46%), Positives = 356/628 (56%), Gaps = 24/628 (3%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
G IPA YNDVN+G+G Q ++ S GNG Q Q P
Sbjct: 28 GTIPALAEDEMMGEDDEYDDLYNDVNIGEGFLQLQRSEVPVPSVDAGNGNFQAQKDSFPA 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEV---RAVQGSEVGSGKHLGAALVEN 551
R + G+ + KY + FP+QK E R + + K +A+
Sbjct: 88 SRAGGLGSEEAKIPGIATEGKYAGTEVQFPQQKGEPVVERETERPADAAQKARPSAITMT 147
Query: 552 VIHGPPSGNLGFQG-----------PNTMGQNSAGRGS------TPGYGVPMTVPDIPNN 680
+ +GN G+QG P M + +A + PG P VP +P N
Sbjct: 148 L--NSQAGNSGYQGSMPMPQKIGADPMAMPEKNASEATPLMNSVVPG---PRVVPHMPTN 202
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +S N ++ + RP +ENG+TM+FVGELHWWTTDAELE VL+QYG +KEIKF
Sbjct: 203 QLNSSGNVNMNNPVISETPFRPSLENGNTMLFVGELHWWTTDAELESVLTQYGNVKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDERASGKSKGYCQVEF++ A+AAACKE MNG+ FNGRACVVAFA+ QT+KQ+G++ ANK
Sbjct: 263 FDERASGKSKGYCQVEFFDPASAAACKEGMNGYNFNGRACVVAFATPQTIKQMGSSYANK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
TQ Q SQPQGRR N+G GR GG N+ GDAGRN+GR SW
Sbjct: 323 TQNQVQSQPQGRRPMNEGVGR-GGPNYTPGDAGRNFGRGSWGRGGPGMPNRGPGGGPVRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRG 1394
+ M +KN +NP G GNGA G +GQG+ GPAFG G+MHPQ MMGPGFDP+FMGRG
Sbjct: 382 RGAMGSKNMMVNP-GAGNGA-GGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPSFMGRG 439
Query: 1395 AGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPN-XXXXXXXXXXXXHP 1571
AGYG VN MG+PGVAPHVNPAFFGRGM N HP
Sbjct: 440 AGYGGFSGPAFPGMMPPFQAVNPMGLPGVAPHVNPAFFGRGMAANGMGMMSAAGMDGPHP 499
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
G MW D S GGW EEH +RTRE E + +KGARS+A SREKER S+
Sbjct: 500 G-MWTDTSGGGWGGEEHGRRTRESSYGGEDNASEYGYGEVSHDKGARSSAVSREKERGSE 558
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXXX 1931
RD+ GNS+KRHR E E D DR D+ HR RE++DGY+++R K+RE E
Sbjct: 559 RDWSGNSDKRHRDEREHDRDRHDKEHRYREERDGYRDYRQKERESEYEEDYDRGQSSSRS 618
Query: 1932 XXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
A E+DHRS SRD +YGKRRR P
Sbjct: 619 RSKSRAAQEEDHRSRSRDTNYGKRRRAP 646
>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
gi|550329195|gb|ERP56065.1| hypothetical protein
POPTR_0010s06150g [Populus trichocarpa]
Length = 591
Score = 501 bits (1289), Expect = e-139
Identities = 282/589 (47%), Positives = 337/589 (57%), Gaps = 6/589 (1%)
Frame = +3
Query: 267 YNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPEPRREVDVPRDLGYGGVKM--- 437
YNDVNVG+ Q H + + GNGG Q +N A E R E + L G +
Sbjct: 35 YNDVNVGENFLQMHGSEAPAPPATAGNGGFQTRN--AHESRVETGGSQVLATSGAGVAVE 92
Query: 438 DKYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVIHGPPSGNLGF-QGPNTMGQN 614
KY +GA FPEQK V+ ++VGS +G+ G + +
Sbjct: 93 GKYSNAGAHFPEQKQAGIGVEANDVGS--------------------IGYGDGSSVAQKG 132
Query: 615 SAGRGSTPGYGVPMTVPDIPNNQIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHW 794
SAG P VP + NQ+ ++N + +N VRPP+ENG T ++VGELHW
Sbjct: 133 SAG---------PRGVPQMQVNQM--NMNADVNRPVVNENQVRPPIENGPTTLYVGELHW 181
Query: 795 WTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGR 974
WTTDAELE V SQYG++KEIKFFDERASGKSKGYCQV+FYE+AAAAACKE MN HVFNGR
Sbjct: 182 WTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGR 241
Query: 975 ACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGR 1154
CVVAFASAQTLKQ+GA+ +KTQ QP Q QGR + NDG GRGG N+ +GD GRNYGR
Sbjct: 242 PCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGDGGRNYGR 301
Query: 1155 ASWXXXXXXXXXXXXXXXXXXXQ--MAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAG 1328
W + M KN N AG+G+GA G YGQG+ GPAFG
Sbjct: 302 GGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAGNVAGVGSGANGGGYGQGIAGPAFGGPA 361
Query: 1329 NGMMHPQAMMGPGFDPTFMGRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFF 1508
GMMH Q MMG GFDP +MGRG GYG VN+MG+ GVAPHVNPAFF
Sbjct: 362 GGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGMLPSFPAVNSMGLAGVAPHVNPAFF 421
Query: 1509 GRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXE 1688
RGM PN W D SMGGW EE +RTRE E
Sbjct: 422 ARGMAPNGMGMMASSGMEGPNPGKWPDTSMGGW-GEEPGRRTRESSYDGDEGASEYGYGE 480
Query: 1689 ATQEKGARSNATSREKERSSQRDYPGNSEKRHRAENEQDWDRSDRSHRNREDKDGYQEHR 1868
EKGARS+ SREKER S+RD+ GNS++RHR E EQDWDRS+R + RE+KD Y+ HR
Sbjct: 481 GNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRGHR 540
Query: 1869 SKDRELGNEXXXXXXXXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
++R+ G E A PE+D+RS SRD DYGKRRR P
Sbjct: 541 QRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPP 589
>gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma cacao]
Length = 697
Score = 499 bits (1286), Expect = e-138
Identities = 296/676 (43%), Positives = 359/676 (53%), Gaps = 72/676 (10%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q ++ G+ G++ Q + APE
Sbjct: 28 GAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQLQRSEAPLQPGGLGSTGLKAQRNEAPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENV-- 554
PR E + L GV + K+ A +PE K E AV E+ SG + + +
Sbjct: 88 PRVEAGGSQGLNIPGVSVQGKHPNVSARYPE-KEEQPAVNRPEMVSGSYPSGSSISQKGS 146
Query: 555 ----IHGPPSGNLGFQG-----------PNTMGQ---NSAGRGSTPGYGVPMTVPDIPNN 680
H NLGFQG P+ + Q N + G G P P +P N
Sbjct: 147 VTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN H +N V+PP+ENG TM+FVGELHWWTTDAELE VLSQYG+LKEIKF
Sbjct: 207 QMGTNVN----HPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDE+ASGKSKGYCQVEFY+ ++AA CKE MNG++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 263 FDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q Q +QPQGRR N+G GRGG +N+ +GDAGRNYGR W
Sbjct: 323 NQGQSQAQPQGRR-PNEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGA-VAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGR 1391
+ + KN AG+GNGA AG YGQG GPAFG GMMHPQ MMG GFDPT+M R
Sbjct: 382 RGGVGVKNMVGISAGVGNGANGAGAYGQG-PGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440
Query: 1392 GAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHP 1571
G GYG VNTMG+ GVAPHVNPAFFGRGM PN
Sbjct: 441 GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPH 500
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
MW D SMGGW +EH +RTRE +A EKG RS+ SREKER S+
Sbjct: 501 AGMWTDASMGGWGGDEHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSE 559
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRN-------------------------------- 1835
R++ GNS++RHR E EQDWDRS+R HR
Sbjct: 560 REWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYREHRHREREWSGNSDRRHRDEK 619
Query: 1836 ----------------REDKDGYQEHRSKDRELGNEXXXXXXXXXXXXXXXXXAVPEDDH 1967
RE+KD Y+EHR ++R+L + A+PE+
Sbjct: 620 ERDWDRSEREHREHRYREEKDSYREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQR 679
Query: 1968 RSYSRDADYGKRRRIP 2015
RS SRD DYGKRRR+P
Sbjct: 680 RSRSRDVDYGKRRRLP 695
>gb|EXB82464.1| Cleavage and polyadenylation specificity factor subunit [Morus
notabilis]
Length = 636
Score = 496 bits (1278), Expect = e-137
Identities = 290/628 (46%), Positives = 346/628 (55%), Gaps = 24/628 (3%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNG-GMQDQNSRAP 380
GAI A YNDVNVG+G Q ++ +A G G G+Q Q P
Sbjct: 26 GAISALADEELMGDDDEYDDLYNDVNVGEGFLQLQRSEAPSLPAAAGVGNGLQAQKRNFP 85
Query: 381 EPRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVI 557
EPR E+ + GV + ++ +G+ FP Q+ ++ + SE GS + A
Sbjct: 86 EPREEIGGSQQPNIPGVSAEGRFSSAGSQFPGQQDGLKVDKKSEAGSMVYPDGA------ 139
Query: 558 HGPPSGNL--GFQGPNTMGQNSAGRGST--PGYGV--PMTVPD---------IPNNQIAA 692
G G + GFQG M +S G S+ PG V P+ P+ +P
Sbjct: 140 SGSQKGRIVAGFQGSKPM-LHSVGVDSSDIPGKMVNEPIQAPNSGGAGPRGILPMQGNQT 198
Query: 693 SVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDER 872
+VN SH +N +RP +ENGSTM+FVGELHWWTTDAELE VLSQYG++KEIKFFDER
Sbjct: 199 TVNANVSHPIVNENQIRPSIENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDER 258
Query: 873 ASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQ 1052
ASGKSKGYCQVE+Y++AAA ACKE M+GHVFNGRACVVAFAS QTLKQ+GAA +K Q Q
Sbjct: 259 ASGKSKGYCQVEYYDAAAAVACKEGMHGHVFNGRACVVAFASPQTLKQMGAAYMSKNQVQ 318
Query: 1053 PLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASW----XXXXXXXXXXXXXXXXXXX 1220
SQPQGRR NDG GRGG NF +GD GRN+GR W
Sbjct: 319 NQSQPQGRRPINDGVGRGGNPNFQSGDGGRNFGRGGWGRGGQGAPNRGPGSGGPMRGRGG 378
Query: 1221 QMAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRGAG 1400
M AKN N AG+G G YGQG+ GP FG GMM+PQ MMG GFDPT+MGRG G
Sbjct: 379 AMGAKNMVGNNAGVG----GGGYGQGLAGPPFGGPAGGMMNPQGMMGTGFDPTYMGRGVG 434
Query: 1401 YGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLM 1580
YG VNTMG VAPHVNPAFFGRGM N H G M
Sbjct: 435 YGGFAGPAFPGMLPSFPAVNTMGFAAVAPHVNPAFFGRGMTNNGMGMVGSSLMDGHQGGM 494
Query: 1581 WGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDY 1760
W DPS+GGW EEH +RTRE + EKG R ER S+RD+
Sbjct: 495 WNDPSIGGWGGEEHGRRTRESSYGGDDGASEYGYGDTNHEKGGR--------ERGSERDW 546
Query: 1761 PGNSEKRHRAENEQDWDRS---DRSHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXXX 1931
GNSE+R+ E +QDWDRS + HR RE KDG +++R K+REL E
Sbjct: 547 SGNSERRNHEERDQDWDRSQKEQKEHRYREGKDGSRDYRPKERELDYEDDWDRGQSSSRL 606
Query: 1932 XXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
V ED HRS SRD DYGKRRR+P
Sbjct: 607 RSRSRVVQEDHHRSRSRDVDYGKRRRLP 634
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 487 bits (1253), Expect = e-134
Identities = 280/605 (46%), Positives = 335/605 (55%), Gaps = 22/605 (3%)
Frame = +3
Query: 267 YNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPEPRREVDVPRDL---GYGGVKM 437
YNDVNVG+ Q H + + GNGG Q +N A E R E + L G G
Sbjct: 35 YNDVNVGENFLQMHGSEAPAPPATVGNGGFQTRN--AHESRIETGGSQALAITGGGPAVE 92
Query: 438 DKYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVI---HGPPSGNLGFQ------ 590
Y + A FPEQK AV+ +VG A VI H N+GFQ
Sbjct: 93 GIYSNAKAHFPEQKQVAVAVEAQDVGPVDGSSVAQKGRVIEMSHDVQVRNMGFQKSTPVP 152
Query: 591 -----GPNTMGQNSAGRGST---PGYGVPMTVPDIPNNQIAASVNEIASHTGGGDNIVRP 746
P+ M + +A G P P + NQ+ S + + +N VRP
Sbjct: 153 PGIGVDPSDMSRKNAIEPEPLPITGSAGPRGAPQMQVNQMHMSAD--VNRPVVNENQVRP 210
Query: 747 PVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQVEFYESAA 926
P+ENGST ++VGELHWWTTDAELE SQ+G++KEIKFFDERASGKSKGYCQV+FYE+AA
Sbjct: 211 PIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAA 270
Query: 927 AAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRNTNDGAGRG 1106
AAACKE MNGHVFNGR CVVAFAS QTLKQ+GA+ NKTQ QP +Q QGR + NDGAGRG
Sbjct: 271 AAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQGRGSMNDGAGRG 330
Query: 1107 GGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXXQ--MAAKNPFMNPAGMGNGAVA 1280
G NF +GD GRNYGR +W + M KN N AG+G+GA
Sbjct: 331 GNANFQSGDGGRNYGRGAWGRGGQGILNRGPGGGPMRGRGAMGPKNMAGNVAGVGSGANG 390
Query: 1281 GNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGRGAGYGSXXXXXXXXXXXXXXXVN 1460
G YGQG+ GPAFG GMM PQ MMG GFDP +MGRG GYG VN
Sbjct: 391 GGYGQGLAGPAFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYGGFAGPGFPGMLPSFPAVN 450
Query: 1461 TMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGWPAEEHAQRTRE 1640
+MG+ GVAPHVNPAFF RGM PN MW G A E+
Sbjct: 451 SMGLAGVAPHVNPAFFARGMAPNGMGMMVSSGMDGPNPGMWESSYDGDEGASEYG----- 505
Query: 1641 XXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDYPGNSEKRHRAENEQDWDRSD 1820
E EKGARS+ SREKER S+RD+ GNS++RHR E EQDWDR +
Sbjct: 506 -------------YGEGNHEKGARSSGASREKERGSERDWSGNSDRRHRDEREQDWDRPE 552
Query: 1821 RSHRNREDKDGYQEHRSKDRELGNEXXXXXXXXXXXXXXXXXAVPEDDHRSYSRDADYGK 2000
R HR +E+KD Y+ HR ++R+ G E A PE+D+RS +RD DYGK
Sbjct: 553 REHRYKEEKDSYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRTRDVDYGK 612
Query: 2001 RRRIP 2015
RRR+P
Sbjct: 613 RRRLP 617
>gb|EOY00741.1| RNA-binding family protein isoform 6 [Theobroma cacao]
Length = 602
Score = 484 bits (1247), Expect = e-134
Identities = 278/583 (47%), Positives = 335/583 (57%), Gaps = 27/583 (4%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAIPA YNDVNVG+G Q ++ G+ G++ Q + APE
Sbjct: 28 GAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQLQRSEAPLQPGGLGSTGLKAQRNEAPE 87
Query: 384 PRREVDVPRDLGYGGVKMD-KYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENV-- 554
PR E + L GV + K+ A +PE K E AV E+ SG + + +
Sbjct: 88 PRVEAGGSQGLNIPGVSVQGKHPNVSARYPE-KEEQPAVNRPEMVSGSYPSGSSISQKGS 146
Query: 555 ----IHGPPSGNLGFQG-----------PNTMGQ---NSAGRGSTPGYGVPMTVPDIPNN 680
H NLGFQG P+ + Q N + G G P P +P N
Sbjct: 147 VTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPN 206
Query: 681 QIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKF 860
Q+ +VN H +N V+PP+ENG TM+FVGELHWWTTDAELE VLSQYG+LKEIKF
Sbjct: 207 QMGTNVN----HPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKF 262
Query: 861 FDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANK 1040
FDE+ASGKSKGYCQVEFY+ ++AA CKE MNG++FNGRACVVAFAS QTLKQ+GA+ NK
Sbjct: 263 FDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK 322
Query: 1041 TQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXX 1220
Q Q +QPQGRR N+G GRGG +N+ +GDAGRNYGR W
Sbjct: 323 NQGQSQAQPQGRR-PNEGLGRGGNLNYQSGDAGRNYGRGGWGRGGQGGVNRAGGGGLMRG 381
Query: 1221 Q--MAAKNPFMNPAGMGNGA-VAGNYGQGMHGPAFGVAGNGMMHPQAMMGPGFDPTFMGR 1391
+ + KN AG+GNGA AG YGQG GPAFG GMMHPQ MMG GFDPT+M R
Sbjct: 382 RGGVGVKNMVGISAGVGNGANGAGAYGQG-PGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440
Query: 1392 GAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHP 1571
G GYG VNTMG+ GVAPHVNPAFFGRGM PN
Sbjct: 441 GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGASGMDGPH 500
Query: 1572 GLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQ 1751
MW D SMGGW +EH +RTRE +A EKG RS+ SREKER S+
Sbjct: 501 AGMWTDASMGGWGGDEHGRRTRESSYGGEDGASEYGYGDANHEKG-RSSGASREKERVSE 559
Query: 1752 RDYPGNSEKRHRAENEQDWDRSDRSHRN---REDKDGYQEHRS 1871
R++ GNS++RHR E EQDWDRS+R HR RE+KD Y+EHR+
Sbjct: 560 REWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYREHRA 602
>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222864687|gb|EEF01818.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 573
Score = 478 bits (1229), Expect = e-132
Identities = 275/589 (46%), Positives = 332/589 (56%), Gaps = 6/589 (1%)
Frame = +3
Query: 267 YNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPEPRREVDVPRDLGYGGVKM--- 437
YNDVNVG+ Q H + + GNGG Q +N A E R E + L G +
Sbjct: 35 YNDVNVGENFLQMHGSEAPAPPATAGNGGFQTRN--AHESRVETGGSQVLATSGAGVAVE 92
Query: 438 DKYQISGASFPEQKAEVRAVQGSEVGSGKHLGAALVENVIHGPPSGNLGF-QGPNTMGQN 614
KY +GA FPEQK V+ ++VGS +G+ G + +
Sbjct: 93 GKYSNAGAHFPEQKQAGIGVEANDVGS--------------------IGYGDGSSVAQKG 132
Query: 615 SAGRGSTPGYGVPMTVPDIPNNQIAASVNEIASHTGGGDNIVRPPVENGSTMIFVGELHW 794
SAG P VP + NQ+ ++N + +N VRPP+ENG T ++VGELHW
Sbjct: 133 SAG---------PRGVPQMQVNQM--NMNADVNRPVVNENQVRPPIENGPTTLYVGELHW 181
Query: 795 WTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGR 974
WTTDAELE V SQYG++KEIKFFDERASGKSKGYCQV+FYE+AAAAACKE MN HVFNGR
Sbjct: 182 WTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGR 241
Query: 975 ACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYGR 1154
CVVAFASAQTLKQ+GA+ +KTQ QP Q QGR + NDG GRGG N+ +GD GRNYGR
Sbjct: 242 PCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGDGGRNYGR 301
Query: 1155 ASWXXXXXXXXXXXXXXXXXXXQ--MAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAG 1328
W + M KN N AG+G+GA G YGQG+ GPAFG
Sbjct: 302 GGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAGNVAGVGSGANGGGYGQGIAGPAFGGPA 361
Query: 1329 NGMMHPQAMMGPGFDPTFMGRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFF 1508
GMMH Q MMG GFDP +MGRG GYG VN+MG+ GVAPHVNPAFF
Sbjct: 362 GGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGMLPSFPAVNSMGLAGVAPHVNPAFF 421
Query: 1509 GRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGWPAEEHAQRTREXXXXXXXXXXXXXXXE 1688
RGM PN G+M G P +E + E E
Sbjct: 422 ARGMAPNGM------------GMMASSGMEGPNPGKESSYDGDE-------GASEYGYGE 462
Query: 1689 ATQEKGARSNATSREKERSSQRDYPGNSEKRHRAENEQDWDRSDRSHRNREDKDGYQEHR 1868
EKGARS+ SREKER S+RD+ GNS++RHR E EQDWDRS+R + RE+KD Y+ HR
Sbjct: 463 GNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYRGHR 522
Query: 1869 SKDRELGNEXXXXXXXXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
++R+ G E A PE+D+RS SRD DYGKRRR P
Sbjct: 523 QRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPP 571
>ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [Amborella trichopoda]
gi|548855834|gb|ERN13697.1| hypothetical protein
AMTR_s00049p00146760 [Amborella trichopoda]
Length = 659
Score = 397 bits (1019), Expect = e-107
Identities = 250/642 (38%), Positives = 318/642 (49%), Gaps = 38/642 (5%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSSSAFGNGGMQDQNSRAPE 383
GAI A YNDVNVGDG Q Q + + GNG +
Sbjct: 28 GAISALADEELMGEDDEYDDLYNDVNVGDGFMQSLQHQEPVQYESMGNGVQAPKEEPIST 87
Query: 384 PRREVDVPRDLGYGGVKMDKYQISGASFPEQKAEVRAVQGSEV-GSGKHLGAALVENVIH 560
P V++P +G+ ++SG S +QK + +++ G+ L + E V
Sbjct: 88 P--PVNIP-GVGHEEKGEKDAKLSGFSDLDQKKAFQEQASNQLAGASSGLKIRVSEPVSE 144
Query: 561 ------------GPPSGNLGFQGPNTMGQNS------------AGRGSTPGYGVP----M 656
PP+ GF M N G G PG G M
Sbjct: 145 PQPQASGFRNAPAPPAKGSGFNTAGAMDANKQLAQTSSNAVPRVGPGPGPGIGAGPNANM 204
Query: 657 TVPDIPNNQIAASVNEIASHTGG--GDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLS 830
P A +V + ++ G + + E+G+TM+FVGEL WWTTDAELE VLS
Sbjct: 205 NRMMGPGPNQAGAVIDTSARFGSENSNRLSHGGGESGNTMLFVGELQWWTTDAELESVLS 264
Query: 831 QYGKLKEIKFFDERASGKSKGYCQVEFYESAAAAACKERMNGHVFNGRACVVAFASAQTL 1010
QYG++K++KFFDERASGKSKGYCQVEFY+ AAAAACKE MNGHVFNGRACVVAFAS TL
Sbjct: 265 QYGRVKDLKFFDERASGKSKGYCQVEFYDPAAAAACKESMNGHVFNGRACVVAFASQHTL 324
Query: 1011 KQIGAASANKTQTQPLSQPQGRRNTNDGAGRGGGMNFPAGDAGRNYG-RASWXXXXXXXX 1187
KQ+ NKTQ Q +Q QGRR NDG GR GG ++ GD RNYG + W
Sbjct: 325 KQLTTNYLNKTQAQAQAQSQGRRPMNDGGGRAGGPSYQGGD--RNYGNKMGWGRGNQGVP 382
Query: 1188 XXXXXXXXXXXQMAAKNPFMNPAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGPG 1367
+ A +G + A YGQ + P G G++HPQ MMG G
Sbjct: 383 NRGQGPAGLRGRPGG---LTGKAMVGGPSGANPYGQALSAPPLGGPPGGLLHPQGMMGSG 439
Query: 1368 FDPTF---MGRGAGYGSXXXXXXXXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXX 1538
FDPT+ +GRG+GYG + T+G+PGVAPHVNPAFFGRG+ N
Sbjct: 440 FDPTYGAHLGRGSGYGGFSGPHFPGMLPSFSPMGTVGLPGVAPHVNPAFFGRGVSANGMG 499
Query: 1539 XXXXXXXXXHPGLMWGDPSMG---GWPAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGA 1709
H G MWGD SMG GW EEH +RTRE + G
Sbjct: 500 MMGSGAMDGHHGGMWGDSSMGGGVGWGNEEHGRRTRESSYGDDGASDYGYGDGGHERGGG 559
Query: 1710 RSNATSREKERSSQRDYPGNSEKRHRAENEQDWDRSDRSHRNREDKDGYQEHRSKDRELG 1889
RSN REK+R S+RD+ E+RHR + + DWDR R +++KDGY +HR ++R+
Sbjct: 560 RSN-PGREKDRGSERDWSSGPERRHRDDRDSDWDRDP---RYKDEKDGYSDHRQRERDWD 615
Query: 1890 NEXXXXXXXXXXXXXXXXXAVPEDDHRSYSRDADYGKRRRIP 2015
NE + E+D RS S+D DYGKRRR+P
Sbjct: 616 NEDDWDRGRTSSRSRSKSRMMQEEDQRSRSKDVDYGKRRRVP 657
>ref|XP_006417146.1| hypothetical protein EUTSA_v10007191mg [Eutrema salsugineum]
gi|557094917|gb|ESQ35499.1| hypothetical protein
EUTSA_v10007191mg [Eutrema salsugineum]
Length = 578
Score = 349 bits (895), Expect = 3e-93
Identities = 240/617 (38%), Positives = 301/617 (48%), Gaps = 15/617 (2%)
Frame = +3
Query: 204 GAIPAXXXXXXXXXXXXXXXXYNDVNVGDGLFQFHQTGDTGSS-SAFGNGGMQDQNSRAP 380
G IPA Y+DVNVG+ FQ H T + G+G +Q QNS
Sbjct: 23 GTIPALADEELMGEDDDYDDLYSDVNVGESFFQAHHQPQTPAQVGGTGSGNIQAQNSNVA 82
Query: 381 EPRREVDVPRDLGYGGVKMD-KYQISGA----SFPEQKAEVRAVQGSEVGSGKHLGAALV 545
EPR GV ++ KY+ G S PE +++V G ++
Sbjct: 83 EPRMA-------NVSGVTVEGKYRNDGGHNGISGPETRSDVYPQASPFGAKGSNIDVQSN 135
Query: 546 ENVIHGPPSGNLGFQGPNTMGQNSAGRGSTPGYG-VPMTVPDIPNNQIAASVNEIASHTG 722
+ + G S L G + N YG VP IP +Q+ A+ N + + +
Sbjct: 136 KVIPQGSTSIVLNTHGFSGNAVNVPEPPVHNPYGAVPQGAQQIPVSQMNANPNAMVNRSP 195
Query: 723 GGDNIVRPPVENGSTMIFVGELHWWTTDAELEDVLSQYGKLKEIKFFDERASGKSKGYCQ 902
+V +NG+TM+FVGELHWWTTDAE+E VLSQYG++KEIKFFDER SGKSKGYCQ
Sbjct: 196 TQPFVV----DNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQ 251
Query: 903 VEFYESAAAAACKERMNGHVFNGRACVVAFASAQTLKQIGAASANKTQTQPLSQPQGRRN 1082
VEFY+SAAAAACKE MNG VFNG+ACVVAFAS +TLKQ+GA + Q Q +Q Q RR
Sbjct: 252 VEFYDSAAAAACKEGMNGFVFNGKACVVAFASPETLKQMGANFTGRNQGQ--NQIQNRRP 309
Query: 1083 TNDGAGRG----GGMNFPAGDAGRNYGRASWXXXXXXXXXXXXXXXXXXXQMAAKNPFMN 1250
N+G GRG MN GD GRNYGR + N
Sbjct: 310 LNEGMGRGNNNNNNMNTQNGDGGRNYGRGGFARGGQGMGNRGGPWGGAMRGRGINN---- 365
Query: 1251 PAGMGNGAVAGNYGQGMHGPAFGVAGNGMMHPQAMMGP-GFDPTFMGRGAGYGSXXXXXX 1427
M NG+ AG YG G+ GP+FG GMMHPQ MMG GFDPTFMGRG GYG
Sbjct: 366 ---MANGSGAGPYGPGLAGPSFG----GMMHPQGMMGAGGFDPTFMGRGGGYGGFSGLAY 418
Query: 1428 XXXXXXXXXVNTMGIPGVAPHVNPAFFGRGMVPNXXXXXXXXXXXXHPGLMWGDPSMGGW 1607
VN MG+ G+APHVNPAFFG GM H MW + + GG
Sbjct: 419 PGMPHSYPGVNAMGMVGIAPHVNPAFFGTGM----GTMGSSGMNGAHAAAMWNEANGGG- 473
Query: 1608 PAEEHAQRTREXXXXXXXXXXXXXXXEATQEKGARSNATSREKERSSQRDYPGNSEKRHR 1787
E E G + ++EKE RD + R
Sbjct: 474 -----------------------GGEEGGSEYGGYED-ENQEKEDKPSRD-------KER 502
Query: 1788 AENEQDWDRS--DRSHR-NREDKDGYQEHRSKDRELGNEXXXXXXXXXXXXXXXXXAVPE 1958
A E++W S DR H+ +RE+KD ++E++ ++ + + E
Sbjct: 503 ATTEREWSESSGDRRHKSHREEKDSHREYK---QQRDRDSDEYDRGQSSMKSRSRSRMAE 559
Query: 1959 DDHRSYSRDADYGKRRR 2009
DDHRS SRDADYGKRRR
Sbjct: 560 DDHRSRSRDADYGKRRR 576