BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00018644
         (855 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              376   e-102
dbj|BAH80072.1| putative unclassified retrotransposon protein [O...   374   e-101
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni...   374   e-101
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   373   e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   373   e-101
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     373   e-101
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]        373   e-101
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   372   e-100
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  372   e-100
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                371   e-100
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]        371   e-100
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         371   e-100
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       371   e-100
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        371   e-100
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   370   e-100
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  370   e-100
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]        369   e-100
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         369   1e-99
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   368   1e-99
emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]        368   1e-99

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  376 bits (966), Expect = e-102
 Identities = 185/286 (64%), Positives = 229/286 (80%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDILVYS +L +HV HL++VL+ LRK++LYA L KC F +D   FLG+VVS DG++V
Sbjct: 1061 VYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKV 1120

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            DE+KV AIR+WP+P +   VRSF GLAGFYRRFV++FST+AAPL E+ KK     W+ + 
Sbjct: 1121 DEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQ 1180

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             +A   LKE L +AP+L LPDF K FE+ECDAS VGIG VL Q+K+PIA+FSEKL GATL
Sbjct: 1181 EDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATL 1240

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NYPTYDKELYAL+R L+T Q+YLWP+EFVIH+DH ++ +LK Q  L  RHARWVEF+ETF
Sbjct: 1241 NYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETF 1300

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ +KKGK+NVVADALSRRYVLL+ L +KLL F  IK LY+ D+
Sbjct: 1301 PYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDS 1346


>dbj|BAH80072.1| putative unclassified retrotransposon protein [Oryza sativa Indica
            Group]
          Length = 848

 Score =  374 bits (959), Expect = e-101
 Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 233  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 292

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 293  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 352

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 353  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVL 412

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 413  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 472

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y+ DA
Sbjct: 473  PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDA 518


>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1234

 Score =  374 bits (959), Expect = e-101
 Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 685  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 744

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 745  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 804

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 805  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVL 864

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 865  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 924

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y+ DA
Sbjct: 925  PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDA 970


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  373 bits (958), Expect = e-101
 Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 869  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 928

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 929  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTWGTSQ 988

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 989  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVL 1048

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 1049 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 1108

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y+ DA
Sbjct: 1109 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDA 1154



 Score =  235 bits (599), Expect = 2e-59
 Identities = 123/261 (47%), Positives = 166/261 (63%), Gaps = 3/261 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            V+ DDILVYS +  DH +HLRLVL  LR+ +LYAKL KC F      FLG+V+S  G+ V
Sbjct: 1661 VFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAV 1720

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D + V A+ DW  P T T +RSFLGLAG+YRRF+ NFS IA P+ +L KK +   W    
Sbjct: 1721 DPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQC 1780

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
              A   LKE L ++P+L LPD  K F V CDAS  G+G VL QE   +A+ S +L     
Sbjct: 1781 EKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEG 1840

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NYPT+D EL A++  LK W++YL      I++DH ++ Y+ +Q+ L +R  RW+E ++ +
Sbjct: 1841 NYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 1900

Query: 142  PYVVVHKKGKENVVADALSRR 80
               + +  GK NVVADALSR+
Sbjct: 1901 DVGIHYHPGKANVVADALSRK 1921


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  373 bits (958), Expect = e-101
 Identities = 177/285 (62%), Positives = 219/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR + L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 897  VYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 956

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYRRFV++FSTIAAPLHELTK+     W  + 
Sbjct: 957  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQ 1016

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +PI +FSEKL+G +L
Sbjct: 1017 RNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSL 1076

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 1077 NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 1136

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ADALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 1137 PYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 1181


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  373 bits (958), Expect = e-101
 Identities = 185/285 (64%), Positives = 217/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS TL +HV H++ VL  LRK++LYA L KC F +D   FLG+VVS  G++V
Sbjct: 872  VYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQV 931

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            DE KV AI+DWPTP   + V+SF GLAGFYRRFVR FSTIAAPL+ELTKKG    W +  
Sbjct: 932  DESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQ 991

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
              A   LK+ L   PLL LPDF K FEVECDAS +GIGGVL Q  +P+A+FSEKL GA L
Sbjct: 992  EKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQL 1051

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY  YDKELYAL+R L+TWQ+YLWP+EFVIHSDH A+ YLK QA L  RHA+WVEF+ETF
Sbjct: 1052 NYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETF 1111

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYVV +KKGKEN+VADALSR+ VLL  L+ K+     IKELYS D
Sbjct: 1112 PYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSAD 1156


>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
          Length = 1431

 Score =  373 bits (957), Expect = e-101
 Identities = 178/286 (62%), Positives = 219/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 814  VYFDDILIYSKSMGEHFKHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 873

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 874  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 933

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKLTG  L
Sbjct: 934  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLTGPVL 993

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 994  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 1053

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y+ DA
Sbjct: 1054 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDA 1099


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  372 bits (954), Expect = e-100
 Identities = 176/285 (61%), Positives = 218/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 210  VYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 269

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYR FV++FSTIAAPLHELTK+     W  + 
Sbjct: 270  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQ 329

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 330  RNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSL 389

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 390  NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 449

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ADALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 450  PYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 494


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  372 bits (954), Expect = e-100
 Identities = 177/286 (61%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS +L DH++HLR V   LR   L+  LGKC F +D  +FLGYVV+  G+ V
Sbjct: 928  VYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEV 987

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ K+ AI  WP P T T VRSFLG AGFYRRFVR+FSTIAAPL+ELTKK    +W  + 
Sbjct: 988  DKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQ 1047

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
              A   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL Q+ +P+A+FSEKL+G +L
Sbjct: 1048 EEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSL 1107

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ ++KSQA L  RHA+WVEF+ETF
Sbjct: 1108 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETF 1167

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGK+NV+ADALSRRY +L+ L  K+     IK+ Y  DA
Sbjct: 1168 PYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDA 1213


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  371 bits (953), Expect = e-100
 Identities = 178/286 (62%), Positives = 218/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 792  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 851

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 852  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 911

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 912  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVL 971

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ ++ SQ  L  RHA+WVEF+E+F
Sbjct: 972  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRHAKWVEFIESF 1031

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y  DA
Sbjct: 1032 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDA 1077


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score =  371 bits (953), Expect = e-100
 Identities = 178/286 (62%), Positives = 218/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 792  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 851

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 852  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 911

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 912  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVL 971

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ ++ SQ  L  RHA+WVEF+E+F
Sbjct: 972  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIHSQGKLNRRHAKWVEFIESF 1031

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y  DA
Sbjct: 1032 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYVHDA 1077


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  371 bits (953), Expect = e-100
 Identities = 176/285 (61%), Positives = 218/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 530  VYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 589

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYRRFV++FSTIAAPLHELTK+     W  + 
Sbjct: 590  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQ 649

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK  E+ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 650  RNAFDTLKDKLTHAPLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSL 709

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 710  NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 769

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ADALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 770  PYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 814


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  371 bits (952), Expect = e-100
 Identities = 176/285 (61%), Positives = 218/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 897  VYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 956

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYRRFV++FSTIAAPLHELTK+     W  + 
Sbjct: 957  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQ 1016

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 1017 RNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSL 1076

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA    RHA+WVEF+E+F
Sbjct: 1077 NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWVEFIESF 1136

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ADALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 1137 PYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 1181


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  371 bits (952), Expect = e-100
 Identities = 176/286 (61%), Positives = 219/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 963  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFLGYVVTPQGIEV 1022

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 1023 DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 1082

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDA+ +G+GGV  QE +P+A+FSEKL+G  L
Sbjct: 1083 ENAFHMLKDKLTHAPLLQLPDFNKTFELECDANGIGLGGVFLQEGKPVAYFSEKLSGPVL 1142

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 1143 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 1202

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+ Y+ DA
Sbjct: 1203 PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDA 1248



 Score =  107 bits (267), Expect = 5e-21
 Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            ++ DD  VY  T    + +L  VLQ  ++++L     KC F       LG+ VS+ G+  
Sbjct: 2060 IFMDDFSVYGKTFGHCLQNLDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEF 2119

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDS- 497
            D  K+  I   P P     +RSFLG A FYRRF+++FSTIA PL  L  K     + D+ 
Sbjct: 2120 DRAKIDVIDQLPPPVNIKGIRSFLGHADFYRRFIKDFSTIARPLTNLLAKDTPFEFDDAC 2179

Query: 496  --HNNALKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEK 368
                  LK+AL + P++Q PD+   FE+ CDAS+  +G VL Q K
Sbjct: 2180 LKSFEILKKALDSGPIIQPPDWTLPFEIMCDASDFAVGAVLGQTK 2224


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  370 bits (950), Expect = e-100
 Identities = 176/285 (61%), Positives = 218/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FL YVV+  G+ V
Sbjct: 897  VYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEV 956

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI +WP PTT T VRSFLGLAGFYRRFV++FSTIAAPLHELTK+     W  + 
Sbjct: 957  DQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQ 1016

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 1017 RNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSL 1076

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 1077 NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 1136

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ADALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 1137 PYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHD 1181


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  370 bits (950), Expect = e-100
 Identities = 177/286 (61%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS +L DH++HLR V   LR   L+  LGKC F +D  +FLGYVV+  G+ V
Sbjct: 925  VYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEV 984

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ K+ AI  WP P T T VRSFLGLAGFYRRFVR+FSTIAAPL+ELTKK    +W  + 
Sbjct: 985  DKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQ 1044

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
              A   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL Q+ +P+A+FSEKL+G +L
Sbjct: 1045 EEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSL 1104

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ ++KSQA L  RHA+WVEF+ETF
Sbjct: 1105 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETF 1164

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+  KKGK+NV+ADALSRRY +L+ L  K+     IK+ Y  DA
Sbjct: 1165 PYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDA 1210


>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
          Length = 1239

 Score =  369 bits (948), Expect = e-100
 Identities = 175/285 (61%), Positives = 218/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFD IL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 675  VYFDGILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 734

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYRRFV++FSTIAAPLHELTK+     W  + 
Sbjct: 735  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQ 794

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 795  RNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSL 854

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKEL+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 855  NYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 914

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+A+ALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 915  PYVIKHKKGKENVIANALSRRYTMLSQLDFKIFGLETIKEQYAHD 959


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  369 bits (946), Expect = 1e-99
 Identities = 175/286 (61%), Positives = 220/286 (76%), Gaps = 3/286 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +HV+H+R V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 872  VYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 931

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNW---K 503
            D+ KV AI  WP P T T VRSFLGLAGFYRRFV++FSTIAAPL+ELTKKG   +W   +
Sbjct: 932  DQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQ 991

Query: 502  DSHNNALKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
            +   N LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G+ L
Sbjct: 992  EHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVL 1051

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 1052 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 1111

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTDA 5
            PYV+ HKKGKEN++ADALSRRY LL  L  K+     IK+ Y  DA
Sbjct: 1112 PYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDA 1157


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  368 bits (945), Expect = 1e-99
 Identities = 174/285 (61%), Positives = 217/285 (76%), Gaps = 3/285 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ DH  HLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 793  VYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 852

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI  WP PTT T VRSFLGLAGFYR FV++FSTIAAPLHELTK+     W  + 
Sbjct: 853  DQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQ 912

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G +L
Sbjct: 913  RNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSL 972

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDK+L+AL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQA L  RHA+WVEF+E+F
Sbjct: 973  NYSTYDKQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESF 1032

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKELYSTD 8
            PYV+ HKKGKENV+ DALSRRY +L+ L  K+     IKE Y+ D
Sbjct: 1033 PYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQYAHD 1077


>emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
          Length = 2388

 Score =  368 bits (945), Expect = 1e-99
 Identities = 175/280 (62%), Positives = 216/280 (77%), Gaps = 3/280 (1%)
 Frame = -3

Query: 853  VYFDDILVYSLTLHDHVNHLRLVLQCLRKQELYAKLGKCRFASDTTNFLGYVVSKDGLRV 674
            VYFDDIL+YS ++ +H NHLR V   LR   L+  L KC F +D  +FLGYVV+  G+ V
Sbjct: 705  VYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEV 764

Query: 673  DEDKVAAIRDWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSH 494
            D+ KV AI+ WPTP T + VRSFLGLAGFYRRFV++FSTIAAPL+ LTKKG    W  S 
Sbjct: 765  DQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQ 824

Query: 493  NNA---LKEALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATL 323
             NA   LK+ L +APLLQLPDFNK FE+ECDAS +G+GGVL QE +P+A+FSEKL+G  L
Sbjct: 825  ENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGLVL 884

Query: 322  NYPTYDKELYALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETF 143
            NY TYDKELYAL+R L+TWQ+YLWP+EFVIHSDH ++ +++SQ  L  RHA+WVEF+E+F
Sbjct: 885  NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF 944

Query: 142  PYVVVHKKGKENVVADALSRRYVLLTHLQSKLLEFSMIKE 23
            PYV+ HKKGKEN++ADALSRRY LLT L  K+     IK+
Sbjct: 945  PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKD 984



 Score =  191 bits (485), Expect = 3e-46
 Identities = 103/252 (40%), Positives = 149/252 (59%), Gaps = 4/252 (1%)
 Frame = -3

Query: 823  LTLHDHVNHLRLVLQCLRKQELYAKLG-KCRFASDTTNFLGYVVSKDGLRVDEDKVAAIR 647
            + L    + LR+  + + K     + G KC F      FLG+V+S  G+ VD + V A+ 
Sbjct: 1645 IDLRSGYHQLRIREKDIPKTAFTTRYGLKCEFWLSEVKFLGHVISAKGVAVDPETVTAVT 1704

Query: 646  DWPTPTTPTMVRSFLGLAGFYRRFVRNFSTIAAPLHELTKKGDVVNWKDSHNNA---LKE 476
            DW  P T T +RSFLGLAG+YRRF+ NFS IA P+ +L KK +   W      A   LKE
Sbjct: 1705 DWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKE 1764

Query: 475  ALCNAPLLQLPDFNKHFEVECDASNVGIGGVLHQEKRPIAFFSEKLTGATLNYPTYDKEL 296
             L ++P+L LPD  K F V CDAS  G+G VL Q+   +A+ S +L     NYPT+D EL
Sbjct: 1765 KLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLWPHEGNYPTHDLEL 1824

Query: 295  YALIRVLKTWQYYLWPREFVIHSDHAAISYLKSQAHLIIRHARWVEFMETFPYVVVHKKG 116
             A++  LK W++YL      I++DH ++ Y+ +Q+ L +R  RW+E ++ +   + +  G
Sbjct: 1825 AAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPG 1884

Query: 115  KENVVADALSRR 80
            K NVVADALS++
Sbjct: 1885 KANVVADALSQK 1896