BLASTX nr result
ID: Rheum21_contig00018016
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00018016
(1731 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 98 1e-17
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 94 1e-16
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 88 1e-14
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 79 6e-12
gb|ABE80156.1| Ribonuclease H [Medicago truncatula] 78 1e-11
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob... 76 5e-11
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 72 1e-09
ref|XP_003548282.1| PREDICTED: TMV resistance protein N [Glycine... 67 2e-08
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 67 3e-08
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 66 4e-08
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 66 4e-08
gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma ... 65 7e-08
ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614... 59 7e-06
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 97.8 bits (242), Expect = 1e-17
Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 25/294 (8%)
Frame = +3
Query: 99 RTKTKSKHSPACPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDN 275
R + S CP C G E+ IH +RDC + W + FF +++ W N
Sbjct: 374 RVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGN 433
Query: 276 LKRKN-----GWSTLFGNMIWHSWKNRNRLVFENETEPADRL------ICKIKMAALNFV 422
LK ++ W TLF +W WK R VF ++ DR+ + +++ A L
Sbjct: 434 LKERSDSERRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVKFLKSAVAEVEAAHL-AA 492
Query: 423 AEDYKRKTKLQGILAYQ------------XXXXXXXXXXXXGWVVRSTSGECILLYSSFF 566
D + ++ ++A++ G V+R G ++ ++
Sbjct: 493 NGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNI 552
Query: 567 GICXXXXXXXXXXXXXXXXXMNRCFPKVLVEMDSLEVVQLLTQDMPSTHSDFYLIKICRE 746
G+C R + +V +E+DS VV L + +H +L+++C
Sbjct: 553 GVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHG 612
Query: 747 LVCNPGWDVQFTHVPRSHNNVADYLANFSFSHQLGMVIHDH-PPHVMQLLEADV 905
+ + W V+ THV R N +AD LAN++F+ G ++ D P HV +L DV
Sbjct: 613 FI-SKDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDV 665
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 94.4 bits (233), Expect = 1e-16
Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 19/278 (6%)
Frame = +3
Query: 132 CPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRKNGWSTLF 308
C C G +ET +H +RDC + W + R FF +++ W NL+ + W T+F
Sbjct: 35 CQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNLRERGSWPTVF 94
Query: 309 GNMIWHSWKNRNRLVFENETEPADRL-----ICKIKMAALNFVAEDYKRKTKLQGILAY- 470
+W WK R +F + DR+ + + A FV + R ++++ ++++
Sbjct: 95 VMAVWWGWKWRCGNIFGGNGKCRDRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSWV 154
Query: 471 -----------QXXXXXXXXXXXXGWVVRSTSGECILLYSSFFGICXXXXXXXXXXXXXX 617
G V+R +G I ++ G+C
Sbjct: 155 SPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGL 214
Query: 618 XXXMNRCFPKVLVEMDSLEVVQLLTQDMPSTHSDFYLIKICRELVCNPGWDVQFTHVPRS 797
R +V +E+DS VV LT + +H +L+++C + + + GW V+ +HV R
Sbjct: 215 FIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFL-SKGWIVRISHVYRE 273
Query: 798 HNNVADYLANFSFSHQLGM-VIHDHPPHVMQLLEADVA 908
N +AD LAN++FS LG+ ++ P V +L DVA
Sbjct: 274 ANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDVA 311
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 87.8 bits (216), Expect = 1e-14
Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 26/295 (8%)
Frame = +3
Query: 99 RTKTKSKHSPACPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDN 275
R + + C C G +ET +H +RDC ++ W+ + H FF+ ++ W N
Sbjct: 933 RVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTN 992
Query: 276 LKRKNG-WSTLFGNMIWHSWKNRNRLVFENETEPADRLICKIKMAALNFVAEDYKR---- 440
+ G W TLFG IW +WK R VF +R IC+ ++ + +AE+ +R
Sbjct: 993 MDPVKGIWPTLFGMGIWWAWKWRCCDVF------GERKICRDRLKFIKDMAEEVRRVHVG 1046
Query: 441 -------KTKLQGILAYQ------------XXXXXXXXXXXXGWVVRSTSGECILLYSSF 563
+++ ++ +Q G +R+ GE + ++
Sbjct: 1047 AVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALN 1106
Query: 564 FGICXXXXXXXXXXXXXXXXXMNRCFPKVLVEMDSLEVVQLLTQDMPSTHSDFYLIKICR 743
G C ++ F +V +++D VV L+ + + H +L+++C+
Sbjct: 1107 IGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQ 1166
Query: 744 ELVCNPGWDVQFTHVPRSHNNVADYLANFSFSHQLGMVIHDH-PPHVMQLLEADV 905
W V+ +HV R N +AD LAN++F+ LG+ D P V LL ADV
Sbjct: 1167 GFFTR-DWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADV 1220
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 79.0 bits (193), Expect = 6e-12
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 27/275 (9%)
Frame = +3
Query: 132 CPRCGL-DETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRK-----NG 293
CP+C + DET H +RDC + W I + FF + W NL+++ N
Sbjct: 366 CPQCRMEDETVTHVLRDCMVATSLWVKIIPQHEQNDFFTFPLREWLVSNLQKQQLILGNP 425
Query: 294 WSTLFGNMIWHSWKNRNRLVFENETEPADRLICKIKMAALNFVAED-------YKRKTKL 452
WS +FG W WK RN +VF P + I IK A +A +R+ K
Sbjct: 426 WSVVFGLACWCLWKWRNGVVFYAAFNPTRKRISMIKSMATATIATSADFDGVQVERRKKE 485
Query: 453 QGILAYQXXXXXXXXXXXX------------GWVVRSTSGECILLYSSFFGICXXXXXXX 596
+ ++ ++ G V+R+ G+ + + G C
Sbjct: 486 EVLIGWRTPQVGWVCLNTDEAYKRSIEEASTGGVIRNAEGDWQAEFLAKLGKCSAYRAEL 545
Query: 597 XXXXXXXXXXMNRCFPKVLVEMDSLEVVQLLTQD--MPSTHSDFYLIKICRELVCNPGWD 770
+ F KV V++D+ VV ++ + +P ++D LI+ ++ V W+
Sbjct: 546 WGVLHGLRLAWDSGFKKVQVQVDNKMVVPAVSTNKLIPGANTD--LIRAIKD-VLQKEWE 602
Query: 771 VQFTHVPRSHNNVADYLANFSFSHQLGMVIHDHPP 875
V F H N V DYLA+++F + ++ + P
Sbjct: 603 VSFMHTYCEGNMVTDYLASYAFVLEKSYIVLEQAP 637
>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
Length = 438
Score = 78.2 bits (191), Expect = 1e-11
Identities = 71/280 (25%), Positives = 114/280 (40%), Gaps = 20/280 (7%)
Frame = +3
Query: 123 SPACPRCGL-DETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRKNGWS 299
SP C RCG DET +H +RDC F ++ WQ IG + F A++ W + + +
Sbjct: 158 SPTCARCGEEDETFLHCVRDCHFSRSIWQKIGFTG-NDFFTATSAHDWFK--IGMSSSLP 214
Query: 300 TLFGNMIWHSWKNRNRLVFENETEPADRLICKIKMAAL----NFVAED----------YK 437
+F +W +W++RN + NET RL I AA F +E+ +
Sbjct: 215 DIFFGGLWWAWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSDRFVKWN 274
Query: 438 RKTKLQGILAYQXXXXXXXXXXXXGWVVRSTSGECILLYSSFFGICXXXXXXXXXXXXXX 617
+ IL G ++R+++G L S F G
Sbjct: 275 NRNHHDHILNVDGSCLGTPSRTGYGGILRNSAG---LFISGFSGFIPNSTDILQAELTAI 331
Query: 618 XXXMNRCFPK----VLVEMDSLEVVQLLTQDMPSTHSDFYLIKICRELVCNPGWDVQFTH 785
++ V+ DSL V L+ D P H+ LI+ ++L+ ++ H
Sbjct: 332 HQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNIKDLLSVR--NITLHH 389
Query: 786 VPRSHNNVADYLANFSFSHQLGMVIHDHPP-HVMQLLEAD 902
R N AD+ A + + +V+H PP ++ LL AD
Sbjct: 390 TLREGNQCADFFAKLGANSDVHLVVHQSPPADLLPLLRAD 429
>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 391
Score = 75.9 bits (185), Expect = 5e-11
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 27/269 (10%)
Frame = +3
Query: 111 KSKHSPACPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRK 287
K +CP G ETC+H +RDC + W++I ++ FF + + W NL K
Sbjct: 121 KMSSDASCPHYYGAKETCLHVLRDCPASKTLWRNILPQSGINQFFQTPLIDWLSSNLNLK 180
Query: 288 N------GWSTLFGNMIWHSWKNRNRLVFENETEPADRLICKIKMAALNFVAEDYKRKTK 449
N W+ +FG W++WK RN +FE + + IK A+N + +
Sbjct: 181 NLYVFDVPWNIVFGIACWYTWKWRNLFIFEGRELSVEGRLSIIKSMAVN-SHNTWSTPSI 239
Query: 450 LQGILAYQXXXXXXXXXXXXGW--------------------VVRSTSGECILLYSSFFG 569
+ G + +Q W V+R G I+ Y+
Sbjct: 240 ISGGMRHQEEILVGWSPPPKDWIAVNSDGVFKSAARTAAAGGVLRDAHGTWIVGYACKLE 299
Query: 570 ICXXXXXXXXXXXXXXXXXMNRCFPKVLVEMDSLEVVQLLTQDMPSTHSDFYLIKICREL 749
R F KV ++ D+ +VQ ++ S+ LI+ + +
Sbjct: 300 TSSGLRVELWGFYKGLQLAWERGFRKVKLQSDNKAMVQAISFSSVHPCSNLDLIRAIKGM 359
Query: 750 VCNPGWDVQFTHVPRSHNNVADYLANFSF 836
+ W+V +H+ R N AD+++N F
Sbjct: 360 L-GRHWEVNISHIYREANTTADFMSNLGF 387
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 71.6 bits (174), Expect = 1e-09
Identities = 66/270 (24%), Positives = 105/270 (38%), Gaps = 22/270 (8%)
Frame = +3
Query: 132 CPRCGL-DETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRKNGWSTLF 308
CP+C + DET H +RDC + W+ L N WS +F
Sbjct: 150 CPQCRMEDETVTHVLRDCMVATSLWKQ---------------------QLILGNPWSIVF 188
Query: 309 GNMIWHSWKNRNRLVFENETEPADRLICKIKMAALNFVAED-------YKRKTKLQGILA 467
W+ WK RN +VF+ P + I IK A +A +R+ K + ++
Sbjct: 189 RLACWYLWKWRNGVVFDVAFNPTRKRISMIKSMATATIAPSADFDGVQVERRKKEEVLIE 248
Query: 468 YQXXXXXXXXXXXXG------------WVVRSTSGECILLYSSFFGICXXXXXXXXXXXX 611
++ G V R+ G+ + + G C
Sbjct: 249 WRAPQVGWVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFVAKLGKCSAYRAELWGILH 308
Query: 612 XXXXXMNRCFPKVLVEMDSLEVVQLLTQD--MPSTHSDFYLIKICRELVCNPGWDVQFTH 785
+ F KV V++D+ VVQ ++ D +P ++D LI + V W+V F H
Sbjct: 309 GLRLAWDSGFKKVQVQVDNKMVVQAISTDKLIPGANTD--LISAIKN-VLQKEWEVSFMH 365
Query: 786 VPRSHNNVADYLANFSFSHQLGMVIHDHPP 875
R N VADYLA+++F + V+ + P
Sbjct: 366 TYREGNMVADYLASYAFVLEESYVVLEQAP 395
>ref|XP_003548282.1| PREDICTED: TMV resistance protein N [Glycine max]
Length = 1420
Score = 67.0 bits (162), Expect = 2e-08
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Frame = +3
Query: 96 LRTKTKSKHSPACPRCG-LDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQED 272
LR + +CPRC L+ETC+HA+RDC + W+ + + L P FF ++ W E
Sbjct: 1101 LRRYRHTSMDSSCPRCPELEETCLHALRDCPKVAAFWRSVLPKKLAPKFFNGDVAVWLET 1160
Query: 273 NLKRKNG---WSTLFGNMIWHSWKNRNRLVF 356
NL W T FG + W++RN LVF
Sbjct: 1161 NLSFSEAAFFWPTFFGIAVELLWESRNDLVF 1191
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
Polynucleotidyl transferase, Ribonuclease H fold-like
protein [Theobroma cacao]
Length = 616
Score = 66.6 bits (161), Expect = 3e-08
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Frame = +3
Query: 123 SPACPRCGL-DETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRKN--- 290
S C C + DE+ +H +RDC + W +G R + FF + W NLK N
Sbjct: 378 SATCALCSVSDESVLHLLRDCPHSKEVWLKLGSRMGYGNFFDLLLSDWLLTNLKNYNVCV 437
Query: 291 ---GWSTLFGNMIWHSWKNRNRLVFENETEPADRLICKIK--MAALNFVAEDYKRKTKLQ 455
W LFG W+ WK RN VFE + P DR + IK +AA + ++L
Sbjct: 438 DGIPWVILFGFTCWYIWKWRNVKVFEGKLIPMDRKLSMIKGLVAASYHAVQIPCTHSRLN 497
Query: 456 GILAYQXXXXXXXXXXXXGWVVRSTSG 536
G Y+ GWV +T G
Sbjct: 498 G---YKREMLVGWQNPPQGWVAVNTDG 521
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 66.2 bits (160), Expect = 4e-08
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Frame = +3
Query: 99 RTKTKSKHSPACPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDN 275
R + K +CP C G++ETC+H +RDC ++ W+ I ++ FF + W N
Sbjct: 743 RVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGINQFFQIPLIDWLSSN 802
Query: 276 LKRKN------GWSTLFGNMIWHSWKNRNRLVFENETEPADRLICKIKMAALN 416
L KN W+ + G W++WK RN +FE + + I+ A++
Sbjct: 803 LNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEGRLSIIRSVAVD 855
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 66.2 bits (160), Expect = 4e-08
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +3
Query: 99 RTKTKSKHSPACPRC-GLDETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDN 275
R + K +CP C G++ETC+H +RDC + W+ I + FF + W N
Sbjct: 615 RVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWRRILPESGINQFFQIPLIDWLSSN 674
Query: 276 LKRKN------GWSTLFGNMIWHSWKNRNRLVFE 359
L KN W+ +FG W++WK N +FE
Sbjct: 675 LNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFE 708
>gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma cacao]
Length = 419
Score = 65.5 bits (158), Expect = 7e-08
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 21/263 (7%)
Frame = +3
Query: 153 ETCIHAIRDCAFIQNTWQHIGGRALHPLFFASNMGTWQEDNLKRKN-----GWSTLFGNM 317
ET +HA+RDC + W + FF+ + W NL K+ W+ +F +
Sbjct: 141 ETLVHALRDCGKSKLLWLQLRPNIHSSDFFSEELKPWVLKNLACKDPVEGIPWAIIFIHA 200
Query: 318 IWHSWKNRNRLVFENE----TEPADRLICKIKMAALNFVAEDYKRKTKLQGILAYQ---- 473
IW W RN +F+ ++ K K A E+++ K ++ ++A++
Sbjct: 201 IWLLWFWRNMNLFDKSFIWPANATKQVWTKAKEAWDTLGKENHRLKQEV--LIAWEKPKN 258
Query: 474 --------XXXXXXXXXXXXGWVVRSTSGECILLYSSFFGICXXXXXXXXXXXXXXXXXM 629
G V+R G I + GI
Sbjct: 259 GYVKLNVDGSAKGQPGLAASGGVIRDEYGNWIAGFCQKIGITFSLTAEPWGIYQGLTLCW 318
Query: 630 NRCFPKVLVEMDSLEVVQLLTQDMPSTHSDFYLIKICRELVCNPGWDVQFTHVPRSHNNV 809
NR K VE+DS+ +Q + + L++ +EL+ WDV +HV R +
Sbjct: 319 NRGLRKFCVEIDSMLALQKIYSQSSMLDPNAQLLRRIKELL-QQSWDVTISHVHREADQC 377
Query: 810 ADYLANFSFSHQLGMVIHDHPPH 878
D++ + +LG+ I ++PPH
Sbjct: 378 TDWMTTHIENLKLGLHIFEYPPH 400
>ref|XP_006468253.1| PREDICTED: uncharacterized protein LOC102614777 [Citrus sinensis]
Length = 320
Score = 58.9 bits (141), Expect = 7e-06
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +3
Query: 510 GWVVRSTSGECILLYSSFFGICXXXXXXXXXXXXXXXXXMNRCFPKVLVEMDSLEVVQLL 689
G ++R G + YS+ G+C F +V VE+DS+ V++L+
Sbjct: 178 GGLIRDFRGVWQVGYSANLGVCSVTSTELWGLFHGLSIAWQYGFRRVYVEVDSMCVMRLI 237
Query: 690 TQDMPSTHSDFYLIKICRELVCNPGWDVQFTHVPRSHNNVADYLANFSFSHQLGM-VIHD 866
+ P + F LI+ + L+ W + H+ R N VAD+LA+++FS LG+
Sbjct: 238 SNPNPPINEHFTLIQEIQALL-RRDWLTKVEHIYREANEVADFLASYNFSFSLGLHCFQF 296
Query: 867 HPPHVMQLLEADV 905
+PP+++ +L DV
Sbjct: 297 NPPNMLSILTNDV 309