BLASTX nr result
ID: Rheum21_contig00017608
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00017608
(1313 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 220 2e-60
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 216 2e-59
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 206 2e-55
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 206 2e-55
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 208 4e-51
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 176 5e-47
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 184 5e-44
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 184 9e-44
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 176 2e-43
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 182 4e-43
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 182 4e-43
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 166 3e-42
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 176 3e-41
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 176 3e-41
gb|ABK28199.1| unknown [Arabidopsis thaliana] 154 3e-40
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali... 154 3e-40
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 154 3e-40
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 167 9e-39
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 164 7e-38
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 164 1e-37
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 220 bits (560), Expect(2) = 2e-60
Identities = 124/355 (34%), Positives = 172/355 (48%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
GDG+++RFW+DRW+ PL E V + + V D+ + GW+ LP
Sbjct: 234 GDGKIIRFWQDRWLLSTPLLEWVSDQLPVEERGQRVADYWIEGVGWDMERIAVFLPEFMR 293
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLSVS 361
++ A+ + G G+ D + W T +G +++ SAY+ + F RVW + V
Sbjct: 294 QRLLAVVIGGCYGVEDKMSWVGTENGRFTVSSAYLIQSVDEISKQCMSRFFDRVWRVMVP 353
Query: 362 ERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFG 541
ER LWL +LTN ER RRH E IH+ RDC +W
Sbjct: 354 ERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIW--MR 411
Query: 542 ASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGET 721
+ FF S ++W+ G E LFA+T+WW WKWR VFG+
Sbjct: 412 VVPVMEQRRFFETSLLEWM-YGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVFGEDSR 470
Query: 722 VLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGL 901
+FL E + + + V E ++AW +P GW +NTDGA G G
Sbjct: 471 CRDRVKFLKSAVAEVEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQ 530
Query: 902 ASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A+A GVIRD G W+ GF IGVCS P+AELWG+++GL +AWE G RRV LE D
Sbjct: 531 ATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVD 585
Score = 41.2 bits (95), Expect(2) = 2e-60
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 1084 LHKHISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
L I HPLA LVR C FIS+DW V+ H++
Sbjct: 593 LQSGIGDSHPLAFLVRLCHGFISKDWIVRITHVY 626
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 216 bits (551), Expect(2) = 2e-59
Identities = 120/358 (33%), Positives = 184/358 (51%), Gaps = 3/358 (0%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMA- 178
GDG+ RFW D+W+ + PL E ++ P L V D GW L +++ P +A
Sbjct: 357 GDGQTTRFWADKWLMNTPLREDIIGPAPVGLEEARVCDLWQHGRGW---LLENIAPYVAP 413
Query: 179 --LMQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSL 352
+++ A+ + + G+ D + W + G++++KSAY SL + T M+ RVW +
Sbjct: 414 DIRLRLKAVVVDNITGVRDRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWKV 473
Query: 353 SVSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWN 532
ER+ LWLG+ ++TN+ER RRH DE IH+ RDC +W
Sbjct: 474 IAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWT 533
Query: 533 MFGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGD 712
G+FFT + ++W+ + LGD G ++ W WKWR VFG
Sbjct: 534 RI--IPRRKRGTFFTQTLLEWVY-----DNLGDSGKVDGCPWSCVRWG-WKWRCGNVFGV 585
Query: 713 GETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGP 892
+ +F+ +A E ++ R E +V+W +P GW K+NTDGA KG
Sbjct: 586 NGKCRDMVKFVRDRASEVIQAHLVEGNSGKIRGRIERMVSWVKPAEGWLKLNTDGASKGN 645
Query: 893 FGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
GLA+A G++R DG W+ GF IG+CS P+AELW +++GL +AWE + R+ +E D
Sbjct: 646 PGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWERKITRLEVEVD 703
Score = 41.6 bits (96), Expect(2) = 2e-59
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
IS HPL+ LVR C FISRDW V+ H++
Sbjct: 715 ISDSHPLSFLVRLCYGFISRDWIVRISHVY 744
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 206 bits (525), Expect(2) = 2e-55
Identities = 122/360 (33%), Positives = 174/360 (48%), Gaps = 5/360 (1%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCV-HDFLADSGGWNWPLFQDLLPAMA 178
GDG+ +RFW DRWV +PL E + + P + V D GW++
Sbjct: 287 GDGQQIRFWTDRWVSGKPLLE-LDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNT 345
Query: 179 LMQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEF----YMLMFKRVW 346
+++ A+ L + G D + W F+ G++S++SAY ++ T+DE F +W
Sbjct: 346 RLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAY----EMLTVDEVPRPNMASFFNCLW 401
Query: 347 SLSVSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAV 526
+ V ER+ LWL ++T ER RRH E +H+ RDC +
Sbjct: 402 KVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGI 461
Query: 527 WNMFGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVF 706
W FF+ S +WL + G+ G P +FAV +WW WKWR +F
Sbjct: 462 W--VRVVPQRRQQGFFSKSLFEWLYDNL-GDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 518
Query: 707 GDGETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKK 886
G+ +F+ AVE + G+ + R E ++ W P GW K+NTDGA +
Sbjct: 519 GENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASR 578
Query: 887 GPFGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
G GLASA GV+RD G W GF IG CS P AELWG+++GL AWE + RV LE D
Sbjct: 579 GNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVD 638
Score = 37.7 bits (86), Expect(2) = 2e-55
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
IS HPL+ LVR C F+ +DW V+ H++
Sbjct: 650 ISDSHPLSFLVRLCHGFLQKDWLVRIVHVY 679
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 206 bits (525), Expect(2) = 2e-55
Identities = 122/360 (33%), Positives = 174/360 (48%), Gaps = 5/360 (1%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCV-HDFLADSGGWNWPLFQDLLPAMA 178
GDG+ +RFW DRWV +PL E + + P + V D GW++
Sbjct: 178 GDGQQIRFWTDRWVSGKPLLE-LDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNT 236
Query: 179 LMQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEF----YMLMFKRVW 346
+++ A+ L + G D + W F+ G++S++SAY ++ T+DE F +W
Sbjct: 237 RLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAY----EMLTVDEVPRPNMASFFNCLW 292
Query: 347 SLSVSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAV 526
+ V ER+ LWL ++T ER RRH E +H+ RDC +
Sbjct: 293 KVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGI 352
Query: 527 WNMFGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVF 706
W FF+ S +WL + G+ G P +FAV +WW WKWR +F
Sbjct: 353 W--VRVVPQRRQQGFFSKSLFEWLYDNL-GDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 409
Query: 707 GDGETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKK 886
G+ +F+ AVE + G+ + R E ++ W P GW K+NTDGA +
Sbjct: 410 GENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASR 469
Query: 887 GPFGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
G GLASA GV+RD G W GF IG CS P AELWG+++GL AWE + RV LE D
Sbjct: 470 GNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVD 529
Score = 37.7 bits (86), Expect(2) = 2e-55
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
IS HPL+ LVR C F+ +DW V+ H++
Sbjct: 541 ISDSHPLSFLVRLCHGFLQKDWLVRIVHVY 570
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 208 bits (530), Expect = 4e-51
Identities = 120/359 (33%), Positives = 172/359 (47%), Gaps = 4/359 (1%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
GDG +RFW DRW+ PL E + + D+ GWN + LP
Sbjct: 793 GDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVK 852
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLR----QLPTLDEFYMLMFKRVWS 349
++ ++ + G GD I W T G ++++SAY L+ P + F F R+W
Sbjct: 853 RRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSF----FNRIWK 908
Query: 350 LSVSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVW 529
L ER+ +WL + ++TNVER RRH +E +H+ RDC +W
Sbjct: 909 LITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW 968
Query: 530 NMFGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFG 709
FF+ S ++WL F + G P LF + +WW WKWR VFG
Sbjct: 969 RRL--LPLRRHHEFFSQSLLEWL----FTNMDPVKGIWP-TLFGMGIWWAWKWRCCDVFG 1021
Query: 710 DGETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKG 889
+ + +F+ A E G+ + VR E ++ W P GW KI TDGA +G
Sbjct: 1022 ERKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRG 1081
Query: 890 PFGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
GLA+A G IR+ G W+ GF IG C+ P+AELWG ++GL +AW+ G RRV L+ D
Sbjct: 1082 NHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLD 1140
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 176 bits (445), Expect(2) = 5e-47
Identities = 113/357 (31%), Positives = 162/357 (45%), Gaps = 2/357 (0%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
GDG+ + FW DRW L Q+ L A+A
Sbjct: 575 GDGKTISFWSDRW------------------------------------LLQEQLSAVAK 598
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYML--MFKRVWSLS 355
ISA L + D + W T +G+++++SAY L+ P +E ++ K++W L
Sbjct: 599 ESISADAL-----LSDELSWKGTQNGDFTVRSAYELLK--PEAEERPLIGSFLKQIWKLV 651
Query: 356 VSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNM 535
ER+ +WL ++TNVER RRH DE +H+ RDC +W
Sbjct: 652 APERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQR 711
Query: 536 FGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDG 715
FF S +WL F L G P LF++ +WW WKWR VFG+
Sbjct: 712 L--LPQRRQNEFF--SQFEWL----FTNLDPAKGDWP-TLFSMGIWWAWKWRCGDVFGER 762
Query: 716 ETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPF 895
+ +F+ A E ++ G+ R E ++ W P W K+ TDGA +G
Sbjct: 763 KLCRDRLKFIKDIAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQ 822
Query: 896 GLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
GLA+A+G I + G W+ GF IG C P+AELWG ++GL +AW+ G RRV L D
Sbjct: 823 GLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLD 879
Score = 40.4 bits (93), Expect(2) = 5e-47
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
IS HPL+ LVR CQ F +RDW V+ H++
Sbjct: 891 ISKAHPLSFLVRLCQGFFTRDWLVRVSHVY 920
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 184 bits (468), Expect = 5e-44
Identities = 109/355 (30%), Positives = 157/355 (44%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
G+GR + FW D W+ L R + + V D A+ GW + +
Sbjct: 583 GNGRDILFWSDNWLSHEALINRAVIEIPNSEKELRVKDLWANGLGWKLDKIEPYISYHTR 642
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLSVS 361
++++A+ + + G D + W +++ G +++KSAY L + F R+W +
Sbjct: 643 LELAAVVVDSVTGARDRLSWGYSADGVFTVKSAYRLLTEDHDPRPNMAAFFDRLWRVVAL 702
Query: 362 ERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFG 541
ER+ LW H DE +H+ +DC +W
Sbjct: 703 ERVKTFLW----------------HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLV 746
Query: 542 ASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGET 721
+ FF S WL V + G + G LFA+ +WW WKWR VFG+
Sbjct: 747 QVQR--SYDFFNGSLFGWLYVNL-GMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVGK 803
Query: 722 VLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGL 901
+F A E + + R E LVAW P G W K+NTDGA +G GL
Sbjct: 804 CRDRVKFFRDLAAEVSHAHAIHSQNGGLRTRVERLVAWKPPDGEWVKLNTDGASRGNLGL 863
Query: 902 ASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A+ GV+RD G W GF IGVCS P+AELWG+++GL +AWE RV LE D
Sbjct: 864 ATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVD 918
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 184 bits (466), Expect = 9e-44
Identities = 110/346 (31%), Positives = 165/346 (47%), Gaps = 3/346 (0%)
Frame = +2
Query: 38 WVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMALMQISAITLSGMP 217
WVG+ PL V + L V D++ +G W+ +LP + QI I +
Sbjct: 614 WVGEVPLINVVADMGFMLNLRARVKDYIMPNGDWDKERLTSILPIEVVNQILCIIPPTLS 673
Query: 218 GMGDSICWAFTSSGEYSIKSAYISLRQLP-TLDEFYMLMFKRVWSLSVSERICHLLWLGI 394
D WA + G ++I S Y L L + E M++ VW L R+C L+ +
Sbjct: 674 ASLDMPYWALSPYGYFTISSTYKHLGSLADSTREENNKMWRLVWDLRGPHRVCLFLFFCL 733
Query: 395 RGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTSLSAGSFF 574
R+LTN ER RR +E +H+ RDC +W + ++ FF
Sbjct: 734 HKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGIN--QFF 791
Query: 575 TLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGETVLAVRQFLIHQ 754
+ +DWL + + L P +++ +T W+ WKWRN +F E + R +I
Sbjct: 792 QIPLIDWLSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEGRLSIIRS 851
Query: 755 AVEFAESRGGSPAKSSSLVRSEE--LVAWCRPPGGWWKINTDGAKKGPFGLASAAGVIRD 928
+ + +P S +R +E LV W PP W +N+DGA K G+A+A GV+RD
Sbjct: 852 VAVDSHNTWSTPRIISGGMRHQEEILVGWSPPPEDWIAVNSDGAFKSAVGIAAAGGVLRD 911
Query: 929 SDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
S G W+ G+ + SV AELWG++ GL LAWE G R+V L+SD
Sbjct: 912 SHGTWIVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSD 957
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 176 bits (445), Expect(2) = 2e-43
Identities = 118/357 (33%), Positives = 165/357 (46%), Gaps = 2/357 (0%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDR-PLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMA 178
G+G V+FW D W L + + P+ P L + V DF++ G WNWP F +LP A
Sbjct: 358 GNGWKVKFWWDCWATTPLTLADLAIHPIPPDLSDLYVADFVSTDGSWNWPKFSHILPHQA 417
Query: 179 LMQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLSV 358
+M I++I D + WA + G++++KSAY L Q + + +K WS
Sbjct: 418 VMIIASIHPPSACNGVDQVYWAASPQGDFTVKSAYDLLDQ--SRGQERDSYWKIAWSWKG 475
Query: 359 SERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMF 538
+ I +WL + RL T E R E+ IH+ DC Y++
Sbjct: 476 PQSIKIFIWLVLHNRLKTRAELATRRLNIEPSCERCGAGLENTIHVLHDCPYSK------ 529
Query: 539 GASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVF-GDG 715
ASTSL + V+F V +W LW WRN+ +F D
Sbjct: 530 -ASTSLGTKLW-------------------------RVIFGVAIWRLWFWRNRFIFTKDH 563
Query: 716 ETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPF 895
A+ + +A E + A S R E+ + W P W K+NTDGAKK P
Sbjct: 564 WESSAIALDIKVRAAEIQQCNSSLTATDKS--RVEKWIRWGAPTWPWVKLNTDGAKK-PS 620
Query: 896 GLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A A +IRD G+W G+ +G CSV AELWG+FHGL +AW G RRVI+E D
Sbjct: 621 DHAGAGELIRDYKGVWQIGYCANLGFCSVTSAELWGLFHGLSIAWLHGYRRVIVEVD 677
Score = 28.9 bits (63), Expect(2) = 2e-43
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 1120 SLVRSCQSFISRDWCVQFRHIF 1185
SL+ + Q I RDW +Q HI+
Sbjct: 697 SLITAIQELIGRDWLIQMNHIY 718
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 182 bits (461), Expect = 4e-43
Identities = 113/358 (31%), Positives = 167/358 (46%), Gaps = 3/358 (0%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
GDG LV FW D WVG+ PL V+ + L V D++ +G W+ +LP +
Sbjct: 474 GDGALVNFWIDTWVGEVPLINVVVDMGFMLNLRARVRDYIMPNGDWDKERLTSILPIEVV 533
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLP-TLDEFYMLMFKRVWSLSV 358
QI I + D WA + SG ++I S Y L L + E M+ VW
Sbjct: 534 NQILYIIPPTLSASLDMPYWALSPSGYFTISSTYEHLGSLADSTREENNKMWHLVWDWKG 593
Query: 359 SERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMF 538
R+C L+ + R+LTN ER RR +E +H+ RDC + +W
Sbjct: 594 PHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWRRI 653
Query: 539 GASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGE 718
+ ++ FF + +DWL + + L P +++F T W+ WK N +F E
Sbjct: 654 LPESGIN--QFFQIPLIDWLSSNLNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFEGRE 711
Query: 719 TVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEE--LVAWCRPPGGWWKINTDGAKKGP 892
+ R +I + + + S +R +E LV W PP W +N DGA K
Sbjct: 712 LSVEGRLNIIRSMAVDSHNTWSTYRIISGGMRHQEKILVGWSPPPEDWITVNLDGAFKSA 771
Query: 893 FGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
+A GV+RD+ G W+ G+ + SV AELWG++ GL LAWE G R+V L+SD
Sbjct: 772 ARTTAAGGVLRDAHGTWIVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSD 829
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase), Polynucleotidyl
transferase, Ribonuclease H fold-like protein [Theobroma
cacao]
Length = 616
Score = 182 bits (461), Expect = 4e-43
Identities = 116/359 (32%), Positives = 172/359 (47%), Gaps = 4/359 (1%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
GDG +RFW+D W+ D PL E+ + N CV +FL D+G WN L + +
Sbjct: 229 GDGLSIRFWKDIWLEDTPLLEQGHTLNIVTSENCCVREFLLDTGEWNHEKLATCLHSDLV 288
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQ-LPTLDEFYMLMFKRVWSLSV 358
+I + D+ WA ++SG ++ S Y LR+ P + W
Sbjct: 289 NKILMFLPPLLSFKPDTPYWASSASGVCTVASTYEVLREDYPNYIGQQSRKWAIAWKWDG 348
Query: 359 SERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMF 538
+RI L + G+LLTN+E RR+ DE +HL RDC +++ VW
Sbjct: 349 PQRIRTFLMQCLHGKLLTNLECRRRNMSSSATCALCSVSDESVLHLLRDCPHSKEVWLKL 408
Query: 539 GASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGE 718
G+ + G+FF L DWL + + G P +LF T W++WKWRN +VF +G+
Sbjct: 409 GSR--MGYGNFFDLLLSDWLLTNLKNYNVCVDGIPWVILFGFTCWYIWKWRNVKVF-EGK 465
Query: 719 TVLAVRQFLIHQAVEFAESRGGS-PAKSSSL--VRSEELVAWCRPPGGWWKINTDGAKKG 889
+ R+ + + + A P S L + E LV W PP GW +NTDGA +
Sbjct: 466 LIPMDRKLSMIKGLVAASYHAVQIPCTHSRLNGYKREMLVGWQNPPQGWVAVNTDGALRR 525
Query: 890 PFGLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
+A+A GV RD + W+ GF +G C AELWG+ H L + E G ++ L+ D
Sbjct: 526 NTNMAAAGGVFRDCNEYWLGGFAAKLGKCYSYRAELWGVLHSLRIVKEKGFSKIWLQVD 584
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 166 bits (419), Expect(2) = 3e-42
Identities = 89/235 (37%), Positives = 123/235 (52%)
Frame = +2
Query: 362 ERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFG 541
ER+ LWL ++ ++TNVER RRH +E +H+ RDC +W+
Sbjct: 4 ERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLV 63
Query: 542 ASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGET 721
+ FFT S ++W+ L + G P V F + +WW WKWR +FG
Sbjct: 64 PRDQIR--QFFTASLLEWIYKN-----LRERGSWPTV-FVMAVWWGWKWRCGNIFGGNGK 115
Query: 722 VLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGL 901
+F+ A E A + + R E LV+W P GW K+NTDGA +G G
Sbjct: 116 CRDRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGF 175
Query: 902 ASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A+A GV+RD +G W+ GF IGVCS P+AELWG+++GL +AW G RRV LE D
Sbjct: 176 ATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVD 230
Score = 34.7 bits (78), Expect(2) = 3e-42
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
I+ HPL+ L+R C F+S+ W V+ H++
Sbjct: 242 IADSHPLSFLLRLCYDFLSKGWIVRISHVY 271
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 176 bits (445), Expect = 3e-41
Identities = 112/356 (31%), Positives = 168/356 (47%), Gaps = 2/356 (0%)
Frame = +2
Query: 5 DGRLVRFWEDRWVGDR-PLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
DG RFW D W + PL + PV L+ V +F+ G WNW F+ L P L
Sbjct: 273 DGTRTRFWLDCWATKQGPLINLAIHPVPQELVKATVSEFINVHGDWNWSAFEHLFPNSVL 332
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLSVS 361
+QI+++ D + W + G ++++SAY +L QL + D +K W+
Sbjct: 333 LQIASVMPPNHLLGVDKLFWRYEPRGNFTVRSAYEALCQLDSNDTG--TAWKLAWTWKGP 390
Query: 362 ERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVW-NMF 538
+ + LW + +L T E RRH ED IH+ RDC VW +
Sbjct: 391 QAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIEDVIHVLRDCQCIMRVWLRLV 450
Query: 539 GASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGE 718
A LS FF + DW+ + + + +F V +W LW WRN + DG+
Sbjct: 451 PARNHLS---FFQSTLRDWITANLQNKWKIASPSTWECIFGVAIWRLWFWRNHFMV-DGK 506
Query: 719 TVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFG 898
+ +L A + + S R E + W PP W K+NTDG+ + G
Sbjct: 507 LTDSSTIYLDITARANEIHKLNNSHISQQPRRKEIFIGWIPPPWPWCKLNTDGSCRKSEG 566
Query: 899 LASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A A G++RDS G W++GF IG SV MAELWG++ GL +AW+ G++ +++E D
Sbjct: 567 -AGAGGILRDSVGHWISGFCLNIGESSVLMAELWGLYQGLRIAWDTGIKCLLVEVD 621
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
transferase, Ribonuclease H fold [Medicago truncatula]
Length = 729
Score = 176 bits (445), Expect = 3e-41
Identities = 110/357 (30%), Positives = 167/357 (46%), Gaps = 2/357 (0%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRP--LCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAM 175
GDGR FW D+W+ + S V+ + V D + SG W+ D L
Sbjct: 358 GDGRSTNFWLDKWISNNTSLFSSSTQSYVDTTI---SVRDAINTSGVWDLNFLMDNLHVD 414
Query: 176 ALMQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLS 355
+ QI A+ D+I W T++ +++++SAY ++ P +K +W+
Sbjct: 415 IVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGD---WKTLWNWK 471
Query: 356 VSERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNM 535
RI +WL GR+LTN R + DE IH+ RDC ++ VW
Sbjct: 472 GPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLR 531
Query: 536 FGASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDG 715
++ +FF+ +W+ + + +GD+ F T W+LW WRNK +F G
Sbjct: 532 LIPHNYIT--NFFSFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIG 589
Query: 716 ETVLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPF 895
+ +I + E KSS + + W RPP GW K+N DGA KG
Sbjct: 590 FQRPSNPTLVIQKFTREIEDNTKLVHKSSHQ-KETIYIGWMRPPFGWVKLNCDGAWKGSG 648
Query: 896 GLASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
LA G++RDSDG W+ G+ K IG+C AE+WG++ GLD+AW +I+ESD
Sbjct: 649 TLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMAWRENTTHLIVESD 705
>gb|ABK28199.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 154 bits (389), Expect(2) = 3e-40
Identities = 89/229 (38%), Positives = 120/229 (52%), Gaps = 8/229 (3%)
Frame = +2
Query: 404 LLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTSLSAGS---FF 574
L+TN ER RRH ++ IH+ RDC +W + AG FF
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCXAMEGIWIRL-----VPAGKRREFF 59
Query: 575 TLSPMDWLKVGVFGELLGDHGPPPD----VLFAVTLWWLWKWRNKRVFGDGETVLAVRQF 742
T S ++WL LGD + LFA+++WW WKWR +FG + +F
Sbjct: 60 TQSLLEWLFAN-----LGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRF 114
Query: 743 LIHQAVEFAESRGGSPAKSSSL-VRSEELVAWCRPPGGWWKINTDGAKKGPFGLASAAGV 919
L A E + + S R E L+AW +P GWWK+NTDGA +G GLASA GV
Sbjct: 115 LKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGV 174
Query: 920 IRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
+RD +G W GF IGVCS P+AELWG+++GL +AWE + R+ +E D
Sbjct: 175 LRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVD 223
Score = 39.3 bits (90), Expect(2) = 3e-40
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
I+ HPL+ LVR C FISRDW V+ H++
Sbjct: 235 INEVHPLSFLVRLCHDFISRDWRVRISHVY 264
>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
Length = 314
Score = 154 bits (389), Expect(2) = 3e-40
Identities = 89/229 (38%), Positives = 120/229 (52%), Gaps = 8/229 (3%)
Frame = +2
Query: 404 LLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTSLSAGS---FF 574
L+TN ER RRH ++ IH+ RDC +W + AG FF
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRL-----VPAGKRREFF 59
Query: 575 TLSPMDWLKVGVFGELLGDHGPPPD----VLFAVTLWWLWKWRNKRVFGDGETVLAVRQF 742
T S ++WL LGD + LFA+++WW WKWR +FG + +F
Sbjct: 60 TQSLLEWLFAN-----LGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRF 114
Query: 743 LIHQAVEFAESRGGSPAKSSSL-VRSEELVAWCRPPGGWWKINTDGAKKGPFGLASAAGV 919
L A E + + S R E L+AW +P GWWK+NTDGA +G GLASA GV
Sbjct: 115 LKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGV 174
Query: 920 IRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
+RD +G W GF IGVCS P+AELWG+++GL +AWE + R+ +E D
Sbjct: 175 LRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVD 223
Score = 39.3 bits (90), Expect(2) = 3e-40
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
I+ HPL+ LVR C FISRDW V+ H++
Sbjct: 235 INEVHPLSFLVRLCHDFISRDWRVRISHVY 264
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 314
Score = 154 bits (389), Expect(2) = 3e-40
Identities = 89/229 (38%), Positives = 120/229 (52%), Gaps = 8/229 (3%)
Frame = +2
Query: 404 LLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTSLSAGS---FF 574
L+TN ER RRH ++ IH+ RDC +W + AG FF
Sbjct: 5 LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRL-----VPAGKRREFF 59
Query: 575 TLSPMDWLKVGVFGELLGDHGPPPD----VLFAVTLWWLWKWRNKRVFGDGETVLAVRQF 742
T S ++WL LGD + LFA+++WW WKWR +FG + +F
Sbjct: 60 TQSLLEWLFAN-----LGDRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRF 114
Query: 743 LIHQAVEFAESRGGSPAKSSSL-VRSEELVAWCRPPGGWWKINTDGAKKGPFGLASAAGV 919
L A E + + S R E L+AW +P GWWK+NTDGA +G GLASA GV
Sbjct: 115 LKDLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGV 174
Query: 920 IRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
+RD +G W GF IGVCS P+AELWG+++GL +AWE + R+ +E D
Sbjct: 175 LRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVD 223
Score = 39.3 bits (90), Expect(2) = 3e-40
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 1096 ISPHHPLASLVRSCQSFISRDWCVQFRHIF 1185
I+ HPL+ LVR C FISRDW V+ H++
Sbjct: 235 INEVHPLSFLVRLCHDFISRDWRVRISHVY 264
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 167 bits (423), Expect = 9e-39
Identities = 110/353 (31%), Positives = 158/353 (44%), Gaps = 3/353 (0%)
Frame = +2
Query: 17 VRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMALMQISA 196
V FW D+W+ D+ L N L V DFL +G W++ LP ++Q+
Sbjct: 3 VNFWRDKWLSDKTLANITCRVANSALDKVVVRDFLNPNGHWDYDKLSYCLPNEVVLQVVQ 62
Query: 197 ITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYML-MFKRVWSLSVSERIC 373
I + D W ++SG+++I SAY LRQL + + +++ W S+R+
Sbjct: 63 IMPPTVTIAQDMPYWGKSASGQFTIASAYDYLRQLSSPTKARPSGIWQGAWKWQGSQRVR 122
Query: 374 HLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTS 553
L+ + GRLLTN +R R DE H+ RDC A ++W
Sbjct: 123 TFLFQCLHGRLLTNRKRLHRQLTADSLCPQCRMEDETVTHVLRDCMVATSLWKQ------ 176
Query: 554 LSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGETVLAV 733
+L+ G P ++F + W+LWKWRN VF
Sbjct: 177 ---------------------QLI--LGNPWSIVFRLACWYLWKWRNGVVFDVAFNPTRK 213
Query: 734 RQFLIHQ--AVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGLAS 907
R +I A S + + E L+ W P GW +NTDGA K AS
Sbjct: 214 RISMIKSMATATIAPSADFDGVQVERRKKEEVLIEWRAPQVGWVCLNTDGAYKRSIEEAS 273
Query: 908 AAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
A GV R+++G W AGFV +G CS AELWGI HGL LAW+ G ++V ++ D
Sbjct: 274 AGGVKRNAEGDWQAGFVAKLGKCSAYRAELWGILHGLRLAWDSGFKKVQVQVD 326
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 164 bits (415), Expect(2) = 7e-38
Identities = 109/353 (30%), Positives = 160/353 (45%), Gaps = 3/353 (0%)
Frame = +2
Query: 17 VRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMALMQISA 196
V F D+W+ D+ L + NP L V +FL +G W++ LP ++Q+
Sbjct: 219 VAFKRDKWLSDKTLADITCRVANPALDKVVVREFLNPNGHWDYDKLSYCLPNEVVLQVVQ 278
Query: 197 ITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYML-MFKRVWSLSVSERIC 373
+ D W ++SG++++ S Y LRQL + + +++ W S+R+
Sbjct: 279 TMPPTVIIAQDMPYWGESASGQFTVASVYDYLRQLSSPAKARPSGIWQGAWKWQGSQRVR 338
Query: 374 HLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFGASTS 553
L+ + GRLLTN ER R DE H+ RDC A ++W
Sbjct: 339 TFLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKI--IPQ 396
Query: 554 LSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGETVLAV 733
FFT +WL + + L G P V+F + W LWKWRN VF
Sbjct: 397 HEQNDFFTFPLREWLVSNLQKQQL-ILGNPWSVVFGLACWCLWKWRNGVVFYAAFNPTRK 455
Query: 734 RQFLIHQ--AVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGLAS 907
R +I A S + + E L+ W P GW +NTD A K AS
Sbjct: 456 RISMIKSMATATIATSADFDGVQVERRKKEEVLIGWRTPQVGWVCLNTDEAYKRSIEEAS 515
Query: 908 AAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
GVIR+++G W A F+ +G CS AELWG+ HGL LAW+ G ++V ++ D
Sbjct: 516 TGGVIRNAEGDWQAEFLAKLGKCSAYRAELWGVLHGLRLAWDSGFKKVQVQVD 568
Score = 21.6 bits (44), Expect(2) = 7e-38
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +1
Query: 1123 LVRSCQSFISRDWCVQFRHIF 1185
L+R+ + + ++W V F H +
Sbjct: 589 LIRAIKDVLQKEWEVSFMHTY 609
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 164 bits (414), Expect = 1e-37
Identities = 105/355 (29%), Positives = 165/355 (46%)
Frame = +2
Query: 2 GDGRLVRFWEDRWVGDRPLCERVLSPVNPMLLNRCVHDFLADSGGWNWPLFQDLLPAMAL 181
G+GR + FW D WVGD PL P + + V D + W+ ++LP +
Sbjct: 931 GNGRKINFWNDWWVGDGPLASNTDCINQPHMTDIKVEDLITSQRRWDTGALHNILPTNMI 990
Query: 182 MQISAITLSGMPGMGDSICWAFTSSGEYSIKSAYISLRQLPTLDEFYMLMFKRVWSLSVS 361
+ A ++ D + W +++G ++ SAY + D + +W + +
Sbjct: 991 DMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDGDDRSH----DWIWRATCT 1046
Query: 362 ERICHLLWLGIRGRLLTNVERCRRHXXXXXXXXXXXXXDEDPIHLFRDCTYARAVWNMFG 541
E+I +W ++ L+ NVER RR DE HLFR C A A W+
Sbjct: 1047 EKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWD--S 1104
Query: 542 ASTSLSAGSFFTLSPMDWLKVGVFGELLGDHGPPPDVLFAVTLWWLWKWRNKRVFGDGET 721
A L+ + L W+K + +G ++F LW LWK RN+ VF + T
Sbjct: 1105 AVPPLTFQTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNIT 1164
Query: 722 VLAVRQFLIHQAVEFAESRGGSPAKSSSLVRSEELVAWCRPPGGWWKINTDGAKKGPFGL 901
A L +E +E+R ++ + V W P G+ K+N+DGA K L
Sbjct: 1165 --APSDILNRSFMESSEARCLLAKRTGLQTAFQTWVVWSPPAAGFTKLNSDGACKSHSHL 1222
Query: 902 ASAAGVIRDSDGMWVAGFVKLIGVCSVPMAELWGIFHGLDLAWEMGLRRVILESD 1066
ASA G++R+ +G+WVAG++ IG + +AELWG+ GL LA G ++I E+D
Sbjct: 1223 ASAGGLLRNENGLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETD 1277