BLASTX nr result
ID: Rheum21_contig00017230
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00017230
(560 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004298704.1| PREDICTED: general transcription factor IIH ... 127 2e-27
gb|EOY24508.1| Nucleotide excision repair, TFIIH, subunit TTDA i... 122 8e-26
ref|XP_002266482.1| PREDICTED: general transcription factor IIH ... 122 8e-26
gb|EMJ12143.1| hypothetical protein PRUPE_ppa024121mg [Prunus pe... 121 1e-25
ref|XP_002329886.1| predicted protein [Populus trichocarpa] gi|5... 120 3e-25
ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like ... 117 1e-24
ref|XP_002313692.1| hypothetical protein POPTR_0009s14080g [Popu... 117 2e-24
ref|XP_006477302.1| PREDICTED: general transcription factor IIH ... 117 3e-24
ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutr... 116 4e-24
ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group] g... 114 2e-23
ref|XP_004147953.1| PREDICTED: general transcription factor IIH ... 112 5e-23
gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indi... 112 5e-23
gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegil... 112 8e-23
ref|XP_006584882.1| PREDICTED: general transcription factor IIH ... 111 1e-22
ref|XP_003525223.2| PREDICTED: general transcription factor IIH ... 111 1e-22
ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780... 111 1e-22
ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arab... 111 1e-22
gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana] 111 1e-22
ref|XP_003614588.1| General transcription factor IIH subunit [Me... 111 1e-22
dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare] 111 1e-22
>ref|XP_004298704.1| PREDICTED: general transcription factor IIH subunit 5-like isoform
1 [Fragaria vesca subsp. vesca]
gi|470125430|ref|XP_004298705.1| PREDICTED: general
transcription factor IIH subunit 5-like isoform 2
[Fragaria vesca subsp. vesca]
Length = 70
Score = 127 bits (318), Expect = 2e-27
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNAT+GLFISCDIPMAQFIINYN SLP SQKFII VLDGTHLFVQPHA EMIKSAI+ F
Sbjct: 1 MVNATRGLFISCDIPMAQFIINYNNSLPQSQKFIIHVLDGTHLFVQPHAAEMIKSAISEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>gb|EOY24508.1| Nucleotide excision repair, TFIIH, subunit TTDA isoform 1
[Theobroma cacao] gi|508777253|gb|EOY24509.1| Nucleotide
excision repair, TFIIH, subunit TTDA isoform 1
[Theobroma cacao]
Length = 70
Score = 122 bits (305), Expect = 8e-26
Identities = 57/69 (82%), Positives = 63/69 (91%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKGLFISCDIPMAQFI+N NAS+PASQKFII VLD TH FVQPHA EMI+SAI+ F
Sbjct: 1 MVNATKGLFISCDIPMAQFIVNLNASMPASQKFIIHVLDNTHFFVQPHAAEMIRSAISEF 60
Query: 200 RDQNTYEKP 174
RDQN+Y+KP
Sbjct: 61 RDQNSYDKP 69
>ref|XP_002266482.1| PREDICTED: general transcription factor IIH subunit 5 [Vitis
vinifera] gi|297742669|emb|CBI34818.3| unnamed protein
product [Vitis vinifera]
Length = 70
Score = 122 bits (305), Expect = 8e-26
Identities = 58/69 (84%), Positives = 63/69 (91%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKGLFISCDIPMAQFIIN NAS+PASQKFII VLD THLFVQPH EMI+SAI+ F
Sbjct: 1 MVNATKGLFISCDIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEF 60
Query: 200 RDQNTYEKP 174
R+QN+YEKP
Sbjct: 61 REQNSYEKP 69
>gb|EMJ12143.1| hypothetical protein PRUPE_ppa024121mg [Prunus persica]
gi|462406895|gb|EMJ12359.1| hypothetical protein
PRUPE_ppb011951mg [Prunus persica]
Length = 70
Score = 121 bits (304), Expect = 1e-25
Identities = 57/69 (82%), Positives = 63/69 (91%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKGLF+SCDIPMAQFIINYN +LP SQ+FII VLD THLFVQPHA EMI+SAI+ F
Sbjct: 1 MVNATKGLFVSCDIPMAQFIINYNNTLPPSQQFIIHVLDSTHLFVQPHAAEMIRSAISEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002329886.1| predicted protein [Populus trichocarpa]
gi|566147873|ref|XP_006368720.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|566147875|ref|XP_006368721.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|566147877|ref|XP_006368722.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346807|gb|ERP65289.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346808|gb|ERP65290.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346809|gb|ERP65291.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
Length = 70
Score = 120 bits (300), Expect = 3e-25
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKGLFISCDIPMAQFIIN NASLPASQKFII +LD TH+FVQPH +MI+SAI+ F
Sbjct: 1 MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60
Query: 200 RDQNTYEKP 174
R+QN+YEKP
Sbjct: 61 REQNSYEKP 69
>ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like [Brachypodium
distachyon]
Length = 457
Score = 117 bits (294), Expect = 1e-24
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KGLFISCD+PMAQFI+N NAS+PAS+KFI+ +LD TH+FVQPH GEMI+S IA F
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASEKFIVHMLDPTHMFVQPHVGEMIRSKIAEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002313692.1| hypothetical protein POPTR_0009s14080g [Populus trichocarpa]
gi|222850100|gb|EEE87647.1| hypothetical protein
POPTR_0009s14080g [Populus trichocarpa]
Length = 70
Score = 117 bits (293), Expect = 2e-24
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKGLFISCDIPM QFIIN NASLPA QKF+I +LD +H+FVQPH EMI+SA A F
Sbjct: 1 MVNATKGLFISCDIPMVQFIINLNASLPALQKFVIHILDSSHMFVQPHVSEMIRSATADF 60
Query: 200 RDQNTYEKPP 171
R+QN+YEKPP
Sbjct: 61 REQNSYEKPP 70
>ref|XP_006477302.1| PREDICTED: general transcription factor IIH subunit 5-like isoform
X1 [Citrus sinensis] gi|568846947|ref|XP_006477303.1|
PREDICTED: general transcription factor IIH subunit
5-like isoform X2 [Citrus sinensis]
gi|568846949|ref|XP_006477304.1| PREDICTED: general
transcription factor IIH subunit 5-like isoform X3
[Citrus sinensis]
Length = 70
Score = 117 bits (292), Expect = 3e-24
Identities = 56/69 (81%), Positives = 61/69 (88%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KGLFISCDIPMAQFIIN NAS+P SQKFII +LD THLFVQP+ EMI+SAIA F
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutrema salsugineum]
gi|557095010|gb|ESQ35592.1| hypothetical protein
EUTSA_v10009271mg [Eutrema salsugineum]
Length = 70
Score = 116 bits (290), Expect = 4e-24
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KG+FISCDIPMAQFI+N N+S+P+SQKFII VLDGTHLFVQPH +MI+S I+ F
Sbjct: 1 MVNAIKGVFISCDIPMAQFIVNMNSSMPSSQKFIIHVLDGTHLFVQPHVEQMIRSTISEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|34393555|dbj|BAC83153.1| unknown protein [Oryza
sativa Japonica Group] gi|113611604|dbj|BAF21982.1|
Os07g0573600 [Oryza sativa Japonica Group]
gi|215707252|dbj|BAG93712.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218199880|gb|EEC82307.1| hypothetical protein
OsI_26568 [Oryza sativa Indica Group]
gi|222637319|gb|EEE67451.1| hypothetical protein
OsJ_24828 [Oryza sativa Japonica Group]
Length = 131
Score = 114 bits (285), Expect = 2e-23
Identities = 51/71 (71%), Positives = 62/71 (87%)
Frame = -1
Query: 386 QSMVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIA 207
++MVNA KGLFISCD+PMAQFI+N NAS+PAS KFI+ +LD TH+FVQPH EMI+S I+
Sbjct: 60 ENMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKIS 119
Query: 206 AFRDQNTYEKP 174
FRDQN+YEKP
Sbjct: 120 EFRDQNSYEKP 130
>ref|XP_004147953.1| PREDICTED: general transcription factor IIH subunit 5-like [Cucumis
sativus] gi|449494289|ref|XP_004159503.1| PREDICTED:
general transcription factor IIH subunit 5-like [Cucumis
sativus]
Length = 70
Score = 112 bits (281), Expect = 5e-23
Identities = 51/69 (73%), Positives = 61/69 (88%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KG+FISCDIPMAQFIINYNASLPAS +FII +LD TH+FVQPH +MI++AI+ F
Sbjct: 1 MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
Query: 200 RDQNTYEKP 174
R+Q +YEKP
Sbjct: 61 REQISYEKP 69
>gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indica Group]
gi|222630525|gb|EEE62657.1| hypothetical protein
OsJ_17460 [Oryza sativa Japonica Group]
Length = 81
Score = 112 bits (281), Expect = 5e-23
Identities = 50/72 (69%), Positives = 62/72 (86%)
Frame = -1
Query: 389 NQSMVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAI 210
+++MVNA KGLFISCD+PMAQFI+N NAS+PAS KFI+ +LD TH+FVQPH EMI+ I
Sbjct: 9 SRNMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRGKI 68
Query: 209 AAFRDQNTYEKP 174
+ FRDQN+YEKP
Sbjct: 69 SEFRDQNSYEKP 80
>gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegilops tauschii]
Length = 70
Score = 112 bits (279), Expect = 8e-23
Identities = 50/69 (72%), Positives = 61/69 (88%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KGLFISCDIPMAQFI+N NAS+PAS+KFI+ +LD TH+F+QP+ G+ IKS +A F
Sbjct: 1 MVNAIKGLFISCDIPMAQFIVNMNASMPASEKFIVHILDPTHMFIQPNMGDYIKSKMAEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_006584882.1| PREDICTED: general transcription factor IIH subunit 5-like [Glycine
max]
Length = 70
Score = 111 bits (278), Expect = 1e-22
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKG+FISCDIPMAQ+IIN NASLPAS KFII +LD TH+FVQPH +MI+S IA F
Sbjct: 1 MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSRIAKF 60
Query: 200 RDQNTYEKP 174
R+ NTY KP
Sbjct: 61 REDNTYVKP 69
>ref|XP_003525223.2| PREDICTED: general transcription factor IIH subunit 5-like [Glycine
max]
Length = 115
Score = 111 bits (278), Expect = 1e-22
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKG+FISCDIPMAQ+IIN NASLPAS KFII +LD TH+FVQPH +MI+S IA F
Sbjct: 46 MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSQIAKF 105
Query: 200 RDQNTYEKP 174
R+ NTY KP
Sbjct: 106 REDNTYVKP 114
>ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780092 [Setaria italica]
Length = 70
Score = 111 bits (278), Expect = 1e-22
Identities = 51/69 (73%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KGLFISCDIPMAQFIIN NAS+P S++FI+ +LD TH+FVQPH EMI+S I F
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINLNASMPPSERFIVHMLDPTHMFVQPHVAEMIRSKIGEF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata] gi|297335775|gb|EFH66192.1| hypothetical protein
ARALYDRAFT_471390 [Arabidopsis lyrata subsp. lyrata]
Length = 71
Score = 111 bits (278), Expect = 1e-22
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KG+FISCDIPM QFI+N N S+P SQKFII VLD THLFVQPH +MI+SAI+ F
Sbjct: 1 MVNAIKGVFISCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 61 RDQNSYEKP 69
>gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana]
Length = 113
Score = 111 bits (277), Expect = 1e-22
Identities = 51/69 (73%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KG+F+SCDIPM QFI+N N S+P SQKFII VLD THLFVQPH +MI+SAI+ F
Sbjct: 43 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 102
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 103 RDQNSYEKP 111
>ref|XP_003614588.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355515923|gb|AES97546.1| General transcription factor
IIH subunit [Medicago truncatula]
gi|388522225|gb|AFK49174.1| unknown [Medicago
truncatula]
Length = 70
Score = 111 bits (277), Expect = 1e-22
Identities = 51/69 (73%), Positives = 59/69 (85%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNATKG+FISCDIPMAQ+I+N NASLPAS KFII +LD TH+FVQPH +MI+S IA F
Sbjct: 1 MVNATKGVFISCDIPMAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60
Query: 200 RDQNTYEKP 174
R+ NTY KP
Sbjct: 61 REDNTYVKP 69
>dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 111 bits (277), Expect = 1e-22
Identities = 50/69 (72%), Positives = 60/69 (86%)
Frame = -1
Query: 380 MVNATKGLFISCDIPMAQFIINYNASLPASQKFIIRVLDGTHLFVQPHAGEMIKSAIAAF 201
MVNA KGLFISCDIPMAQFI+N NAS+PAS KFI+ +LD TH+F+QP+ G+ IKS +A F
Sbjct: 2 MVNAIKGLFISCDIPMAQFIVNMNASMPASDKFIVHILDPTHMFIQPNMGDYIKSKMAEF 61
Query: 200 RDQNTYEKP 174
RDQN+YEKP
Sbjct: 62 RDQNSYEKP 70