BLASTX nr result
ID: Rheum21_contig00016931
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00016931
(257 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein... 90 3e-16
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 89 5e-16
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 89 6e-16
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz... 89 8e-16
gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indi... 89 8e-16
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo... 89 8e-16
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g... 89 8e-16
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote... 88 1e-15
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 87 2e-15
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 87 2e-15
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi... 87 2e-15
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein... 87 2e-15
dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare] 87 2e-15
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S... 85 9e-15
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein... 84 2e-14
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854... 84 2e-14
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 83 3e-14
ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293... 83 4e-14
gb|ESW34623.1| hypothetical protein PHAVU_001G167200g [Phaseolus... 82 7e-14
ref|XP_004302289.1| PREDICTED: RNA polymerase-associated protein... 81 2e-13
>ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Oryza
brachyantha]
Length = 645
Score = 90.1 bits (222), Expect = 3e-16
Identities = 43/64 (67%), Positives = 51/64 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR +NF+ ASE+KPVNTSLKAGEA YDPFSRRWTRS NY++AK EG + + VPNGD+
Sbjct: 476 NRADNFKNASEMKPVNTSLKAGEAAYDPFSRRWTRSRNYYAAKPEG---ENAEVPNGDSA 532
Query: 183 DLVA 194
VA
Sbjct: 533 SAVA 536
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 89.4 bits (220), Expect = 5e-16
Identities = 43/64 (67%), Positives = 49/64 (76%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASELKPVNT LKAGEAGYDPFSRRWTRS NY+ AK G D + V NGD +
Sbjct: 488 NRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGA--DAAAVANGDRI 545
Query: 183 DLVA 194
++A
Sbjct: 546 GVIA 549
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/69 (66%), Positives = 51/69 (73%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENFR ASELKPVNTSLKAGEAGYDPFSRRWTRS NY+ +K GGD +T N +A
Sbjct: 486 NRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAAAAT--NNEAS 543
Query: 183 DLVADVSVT 209
VA + T
Sbjct: 544 GTVAVANKT 552
>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
containing protein, expressed [Oryza sativa Japonica
Group] gi|215697432|dbj|BAG91426.1| unnamed protein
product [Oryza sativa Japonica Group]
Length = 522
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+KPVNTSLK GEAGYDPFSRRWTRS NY++AK EG + + VPNG+
Sbjct: 353 NRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG---ESAEVPNGNDG 409
Query: 183 DLVADVSVTIEG 218
VA T G
Sbjct: 410 SAVAGDEDTKNG 421
>gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indica Group]
Length = 780
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+KPVNTSLK GEAGYDPFSRRWTRS NY++AK EG + + VPNG+
Sbjct: 611 NRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG---ESAEVPNGNDG 667
Query: 183 DLVADVSVTIEG 218
VA T G
Sbjct: 668 SAVAGDEDTKNG 679
>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
Length = 653
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+KPVNTSLK GEAGYDPFSRRWTRS NY++AK EG + + VPNG+
Sbjct: 484 NRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG---ESAEVPNGNDG 540
Query: 183 DLVADVSVTIEG 218
VA T G
Sbjct: 541 SAVAGDEDTKNG 552
>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
gi|113649443|dbj|BAF29955.1| Os12g0535900, partial
[Oryza sativa Japonica Group]
Length = 599
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+KPVNTSLK GEAGYDPFSRRWTRS NY++AK EG + + VPNG+
Sbjct: 430 NRAENFKNASEMKPVNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG---ESAEVPNGNDG 486
Query: 183 DLVADVSVTIEG 218
VA T G
Sbjct: 487 SAVAGDEDTKNG 498
>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum
urartu]
Length = 681
Score = 88.2 bits (217), Expect = 1e-15
Identities = 44/73 (60%), Positives = 58/73 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+K VNTSLKAGEAGYDPFSRRWTRS NY++AK EG ++ V NG++
Sbjct: 510 NRAENFKNASEMKAVNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEGEAENAEAV-NGNSD 568
Query: 183 DLVADVSVTIEGG 221
+++A V+ ++GG
Sbjct: 569 NVIA-VTEAVKGG 580
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/64 (67%), Positives = 47/64 (73%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NRVENFR ASELKP+NT LKAGEAGYDPFSRRWTRS NY+ + GGD D N +A
Sbjct: 489 NRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGD-DAVAASNSEAN 547
Query: 183 DLVA 194
D A
Sbjct: 548 DTAA 551
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGG----DQDPSTVPN 170
NR ENF+ ASELKPVNTSLKAGEAGYDPFSRRWTRS NY+ +K EGG ++ T
Sbjct: 472 NRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPEGGGEVVKEEAETAAT 531
Query: 171 GDAVDLVADVSVTIE 215
A++ AD ++
Sbjct: 532 KAALEAAADAGKLVD 546
>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
Length = 661
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/73 (58%), Positives = 58/73 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+K VNTSLKAGEAGYDPFSRRWTRS NY++AK E G+ + + NG++
Sbjct: 490 NRAENFKNASEMKAVNTSLKAGEAGYDPFSRRWTRSRNYYAAKPE-GEAENAEAANGNSD 548
Query: 183 DLVADVSVTIEGG 221
+++A V+ ++GG
Sbjct: 549 NVIA-VTEAVKGG 560
>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
[Brachypodium distachyon]
Length = 658
Score = 87.4 bits (215), Expect = 2e-15
Identities = 46/77 (59%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEG---GDQDPSTVPNG 173
NR ENF+ ASE+K VNTSLKAGEAGYDPFSRRWTRS NY++AK EG GD + NG
Sbjct: 485 NRAENFKTASEMKAVNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEGEAEGDNAEAANGNG 544
Query: 174 D-AVDLVADVSVTIEGG 221
D A+ DV ++ G
Sbjct: 545 DSAIASTKDVKGAVQVG 561
>dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/73 (58%), Positives = 58/73 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASE+K VNTSLKAGEAGYDPFSRRWTRS NY++AK E G+ + + NG++
Sbjct: 490 NRAENFKNASEMKAVNTSLKAGEAGYDPFSRRWTRSRNYYAAKPE-GEAENAEAANGNSD 548
Query: 183 DLVADVSVTIEGG 221
+++A V+ ++GG
Sbjct: 549 NVIA-VTEAVKGG 560
>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
gi|241942942|gb|EES16087.1| hypothetical protein
SORBIDRAFT_08g017010 [Sorghum bicolor]
Length = 656
Score = 85.1 bits (209), Expect = 9e-15
Identities = 42/63 (66%), Positives = 50/63 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR +NF+ ASE+KPVNTSLKAGEAGYDPFSRRWTRS NY+++K GGD T NG +
Sbjct: 486 NRADNFKNASEMKPVNTSLKAGEAGYDPFSRRWTRSRNYYASK-PGGDNAEETA-NGSSS 543
Query: 183 DLV 191
D+V
Sbjct: 544 DVV 546
>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
italica]
Length = 650
Score = 83.6 bits (205), Expect = 2e-14
Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 2/62 (3%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGD--QDPSTVPNGD 176
NR ENF+ ASE+KP+NTSLKAGEAGYDPFSRRWTRS NY++AK GGD ++ + +G+
Sbjct: 480 NRAENFKNASEMKPINTSLKAGEAGYDPFSRRWTRSRNYYTAK-PGGDNVEEAANGSSGN 538
Query: 177 AV 182
AV
Sbjct: 539 AV 540
>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
Length = 493
Score = 83.6 bits (205), Expect = 2e-14
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDA 179
NR ENF+ ASE K VNTSLKAGEAGYDPFSRRWTRS NY+ +K GGD + + V NG+A
Sbjct: 319 NRAENFKNASESKRVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPGGGD-EAAAVANGEA 376
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 83.2 bits (204), Expect = 3e-14
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NRVENFR ASE+KPVNT LKAGEAGYDPFSRRWTRS NY+ +K D DP +A
Sbjct: 487 NRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEAD-DPVATKISEAN 545
Query: 183 DLVA 194
+ VA
Sbjct: 546 ETVA 549
>ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293|gb|ACL52521.1| unknown
[Zea mays] gi|414878213|tpg|DAA55344.1| TPA:
hypothetical protein ZEAMMB73_654453 [Zea mays]
Length = 647
Score = 82.8 bits (203), Expect = 4e-14
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR +NF+ ASELKPVNTSLKAGEAGYDPFSRRWTRS NY+++K GGD T ++
Sbjct: 477 NRADNFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYASK-PGGDNAEETANKSSSI 535
>gb|ESW34623.1| hypothetical protein PHAVU_001G167200g [Phaseolus vulgaris]
Length = 645
Score = 82.0 bits (201), Expect = 7e-14
Identities = 40/65 (61%), Positives = 47/65 (72%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQDPSTVPNGDAV 182
NR ENF+ ASELKP NT LKAGEAGYDPFSRRWTRS NY++AK + N ++
Sbjct: 473 NRFENFKNASELKPRNTDLKAGEAGYDPFSRRWTRSRNYYAAK----PAEEVAAENNSSI 528
Query: 183 DLVAD 197
D+VAD
Sbjct: 529 DMVAD 533
>ref|XP_004302289.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 679
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = +3
Query: 3 NRVENFRMASELKPVNTSLKAGEAGYDPFSRRWTRSSNYFSAKAEGGDQ 149
NR ENF+ AS LKP+NT+LKAGEAGYDPFSRRWTRS NY+ K GGD+
Sbjct: 504 NRFENFKNASGLKPINTNLKAGEAGYDPFSRRWTRSRNYYVGKPGGGDE 552