BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00016681
         (1493 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   362   2e-97
gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobrom...   347   1e-92
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   343   8e-92
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   342   3e-91
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   342   3e-91
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   342   3e-91
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   339   2e-90
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]      332   2e-88
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   325   4e-86
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   325   4e-86
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm...   322   3e-85
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   317   6e-84
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   317   1e-83
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                  315   2e-83
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   310   8e-82
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu...   310   1e-81
ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Popu...   306   1e-80
ref|XP_006400090.1| hypothetical protein EUTSA_v10012544mg [Eutr...   284   8e-74
ref|XP_006289882.1| hypothetical protein CARUB_v10003497mg [Caps...   283   1e-73
ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   282   2e-73

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  362 bits (929), Expect = 2e-97
 Identities = 209/407 (51%), Positives = 253/407 (62%)
 Frame = +3

Query: 273  LDPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFS 452
            LD  I   KP N  F P P    T MWRN+AK+AI R+  K     S  LSR + FLGFS
Sbjct: 17   LDLIISFEKPTN--FRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFS 74

Query: 453  QNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLS 632
            Q+   PEI K    E SS     F+E+G  R  E+  +ED++    +  + N    +G  
Sbjct: 75   QDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFC 134

Query: 633  PKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSK 812
            PK + S+AE  AV STDV+E+V   DEI                               K
Sbjct: 135  PKSYASVAE--AVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRR----------EK 182

Query: 813  LEKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGW 992
            L+   G+ + +Y  L+RRQVKIETE WE AAKEY+ELLMDMCE KLAPNLPY+K++FLGW
Sbjct: 183  LKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGW 242

Query: 993  FEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVV 1172
            FEPL+  I + QEL R GK KA+YAPYFDQLP+D M+VITMHKLVGLL+TGGEHG  RVV
Sbjct: 243  FEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVV 302

Query: 1173 QAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKV 1352
            QAAC+IGDAIEQE ++H FLE TK  KV KDK     E G    V    I EQ +L KKV
Sbjct: 303  QAACVIGDAIEQEVRIHNFLEKTKRKKVGKDK---NVEGGGFDPV----IHEQEKLRKKV 355

Query: 1353 TNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            TNL+KKQKL A R+IV   D+  PWG +A+AKVG  LI L +QTAY+
Sbjct: 356  TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYI 402


>gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  347 bits (889), Expect = 1e-92
 Identities = 200/390 (51%), Positives = 249/390 (63%), Gaps = 1/390 (0%)
 Frame = +3

Query: 327  PPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSS 506
            PP  S  MWRN+AK AISR ++          +R + FLG SQ+S   E  K R ++  S
Sbjct: 35   PPKISIVMWRNIAKHAISRRTHSFQC-----FARTYSFLGTSQDSIFHEKSKFRGLKFGS 89

Query: 507  -SKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLSTD 683
                 +F ++G  R  E+L   + +    +    N    +GL P+G+VS+AE  AV STD
Sbjct: 90   FCSNSRFLDMGGRRIGEVLTNVEYIGKQSFGSPRNEIGCSGLCPRGYVSVAE--AVSSTD 147

Query: 684  VDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALKR 863
            V+E+V +V+EI                       +        +E+  G+ E KY  L+R
Sbjct: 148  VEEDVSVVEEIKELLDEMKKEQRRETGNRRRRCQI--------IER--GMGESKYRFLRR 197

Query: 864  RQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIRK 1043
            RQVKIETE WEQAAKEYRELLMDMCEHKLAPNLPYIK++FLGWFEPL+  I + QEL R 
Sbjct: 198  RQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDAIIKEQELYRL 257

Query: 1044 GKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKLH 1223
            GK +A YA Y DQLP+D   VITMHKL+GLL+TGGEHG ARVVQAAC+IGDAIEQE ++H
Sbjct: 258  GKLRAGYAGYLDQLPADMTAVITMHKLMGLLMTGGEHGCARVVQAACLIGDAIEQEVRIH 317

Query: 1224 KFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIVN 1403
            KFLE TK  +V K      ++EG     E   I+EQ +L KKVT+LIKKQKL AVR+IV 
Sbjct: 318  KFLEKTKKKRVDKK----NEDEGDKPNAE---IKEQEKLRKKVTDLIKKQKLPAVRQIVK 370

Query: 1404 SQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
             QDD  PWG DA+AKVG HLI L +QTAY+
Sbjct: 371  GQDDTKPWGQDAKAKVGSHLIELLMQTAYI 400


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  343 bits (881), Expect = 8e-92
 Identities = 191/389 (49%), Positives = 242/389 (62%)
 Frame = +3

Query: 327  PPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSS 506
            P   ST +WRN AKQAISR      +  S   SR +  LG  Q S  P  +K  P ELSS
Sbjct: 29   PSMISTTVWRNFAKQAISRKQRFHINSQSF--SRAYSLLGICQESVFPGNFK--PFELSS 84

Query: 507  SKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLSTDV 686
               L+F+E+G      +   ED +    +  + N    NG  PKG+ S+AE  AV STDV
Sbjct: 85   CSSLRFSEVGFRGKGAISSPEDCMCKPSFWSVRNPIWFNGFCPKGYASVAE--AVSSTDV 142

Query: 687  DEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALKRR 866
            +EEV +VDE+                              ++  +  G+ + KY  LKRR
Sbjct: 143  EEEVSVVDEVQELLQQMSIEEKREAQYKQR----------TRQNRARGMGQGKYHMLKRR 192

Query: 867  QVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIRKG 1046
            Q+KIETE WE+AAKEYREL+MDMCE KLAPNLPY+K++FLGWFEPL++ ID+ Q+L RKG
Sbjct: 193  QIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDLCRKG 252

Query: 1047 KCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKLHK 1226
            K K +YAPY DQLP+D M+VITMHKL+GLL+TGGEHG  RVV AAC IG+AIEQE ++HK
Sbjct: 253  KNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHK 312

Query: 1227 FLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIVNS 1406
            FLE T+  KV KD+ +GE +            +E+ +L KKVTNL+KKQKL AVR IV+ 
Sbjct: 313  FLEMTRKKKVDKDQENGESDAAK---------KEREKLNKKVTNLMKKQKLKAVRGIVSK 363

Query: 1407 QDDFPPWGADARAKVGGHLINLFVQTAYV 1493
             D    W  +ARAKVG  LI L  QTA++
Sbjct: 364  HDASKSWSLEARAKVGSRLIELLTQTAFI 392


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533046|gb|ESR44229.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  342 bits (876), Expect = 3e-91
 Identities = 201/391 (51%), Positives = 243/391 (62%)
 Frame = +3

Query: 321  PYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIEL 500
            P P   S+ MWRN+AKQAIS    K         SR + FLG SQ+S L E  K   +++
Sbjct: 38   PSPEKISSVMWRNVAKQAISLHLKKP-------FSRAYSFLGISQDSILREKVKFGCLDM 90

Query: 501  SSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLST 680
                     E+G  R  E+L  ED +   G T  G L + N   P+G+ ++AE  AV ST
Sbjct: 91   VPRG---IHEVGSGRIGEILNHEDYM---GRTSFGVLKNDNFWCPRGYATVAE--AVSST 142

Query: 681  DVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALK 860
            DV+E+V +V+EI                      G  G  G ++     G+   KY  LK
Sbjct: 143  DVEEDVSIVEEIQELLQEMKKEEQR--------EGENG-GGRNRRRVARGMGSGKYRMLK 193

Query: 861  RRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIR 1040
             RQVKIETE WEQAA EYRELLMDMCE KLAPNLPY+K++FLGWFEPL+  I + QE  R
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 1041 KGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKL 1220
              K K +YAPYFDQLP+D M VITMHKL+GLL+TGGEHG ARVVQAACIIGDAIEQE ++
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 1221 HKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIV 1400
            HKFLE TK     K+K   E +E ++         EQ +L KKVT+LIKKQKL AVR+IV
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTT------EQEKLRKKVTDLIKKQKLPAVRRIV 367

Query: 1401 NSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
              QDDF PWG DARAKVG  +I L  QTAY+
Sbjct: 368  KGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  342 bits (876), Expect = 3e-91
 Identities = 201/391 (51%), Positives = 243/391 (62%)
 Frame = +3

Query: 321  PYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIEL 500
            P P   S+ MWRN+AKQAIS    K         SR + FLG SQ+S L E  K   +++
Sbjct: 38   PSPEKISSVMWRNVAKQAISLHLKKP-------FSRAYSFLGISQDSILREKVKFGCLDM 90

Query: 501  SSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLST 680
                     E+G  R  E+L  ED +   G T  G L + N   P+G+ ++AE  AV ST
Sbjct: 91   VPRG---IHEVGSGRIGEILNHEDYM---GRTSFGVLKNDNFWCPRGYATVAE--AVSST 142

Query: 681  DVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALK 860
            DV+E+V +V+EI                      G  G  G ++     G+   KY  LK
Sbjct: 143  DVEEDVSIVEEIQELLQEMKKEEQR--------EGENG-GGRNRRRVARGMGSGKYRMLK 193

Query: 861  RRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIR 1040
             RQVKIETE WEQAA EYRELLMDMCE KLAPNLPY+K++FLGWFEPL+  I + QE  R
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 1041 KGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKL 1220
              K K +YAPYFDQLP+D M VITMHKL+GLL+TGGEHG ARVVQAACIIGDAIEQE ++
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 1221 HKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIV 1400
            HKFLE TK     K+K   E +E ++         EQ +L KKVT+LIKKQKL AVR+IV
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTT------EQEKLRKKVTDLIKKQKLPAVRRIV 367

Query: 1401 NSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
              QDDF PWG DARAKVG  +I L  QTAY+
Sbjct: 368  KGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533044|gb|ESR44227.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  342 bits (876), Expect = 3e-91
 Identities = 201/391 (51%), Positives = 243/391 (62%)
 Frame = +3

Query: 321  PYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIEL 500
            P P   S+ MWRN+AKQAIS    K         SR + FLG SQ+S L E  K   +++
Sbjct: 38   PSPEKISSVMWRNVAKQAISLHLKKP-------FSRAYSFLGISQDSILREKVKFGCLDM 90

Query: 501  SSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLST 680
                     E+G  R  E+L  ED +   G T  G L + N   P+G+ ++AE  AV ST
Sbjct: 91   VPRG---IHEVGSGRIGEILNHEDYM---GRTSFGVLKNDNFWCPRGYATVAE--AVSST 142

Query: 681  DVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALK 860
            DV+E+V +V+EI                      G  G  G ++     G+   KY  LK
Sbjct: 143  DVEEDVSIVEEIQELLQEMKKEEQR--------EGENG-GGRNRRRVARGMGSGKYRMLK 193

Query: 861  RRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIR 1040
             RQVKIETE WEQAA EYRELLMDMCE KLAPNLPY+K++FLGWFEPL+  I + QE  R
Sbjct: 194  MRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 253

Query: 1041 KGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKL 1220
              K K +YAPYFDQLP+D M VITMHKL+GLL+TGGEHG ARVVQAACIIGDAIEQE ++
Sbjct: 254  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 313

Query: 1221 HKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIV 1400
            HKFLE TK     K+K   E +E ++         EQ +L KKVT+LIKKQKL AVR+IV
Sbjct: 314  HKFLEKTKKKNETKNKEDEEGDESNTVTT------EQEKLRKKVTDLIKKQKLPAVRRIV 367

Query: 1401 NSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
              QDDF PWG DARAKVG  +I L  QTAY+
Sbjct: 368  KGQDDFKPWGQDARAKVGSRVIELLTQTAYI 398


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  339 bits (870), Expect = 2e-90
 Identities = 198/391 (50%), Positives = 242/391 (61%)
 Frame = +3

Query: 321  PYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIEL 500
            P P   S+ MWRN+AKQAIS    K         SR + FLG SQ+S L E  K   +++
Sbjct: 38   PSPEKISSVMWRNVAKQAISLHLKKP-------FSRAYSFLGISQDSILREKVKFGCLDM 90

Query: 501  SSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLST 680
                     E+G  R  E+L  ED +   G T  G L + N   P+G+ ++AE  AV ST
Sbjct: 91   VPRG---IHEVGSGRIGEILNHEDYM---GRTSFGVLKNDNFWCPRGYATVAE--AVSST 142

Query: 681  DVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALK 860
            DV+E+V +V+EI                        +   G ++     G+   KY  LK
Sbjct: 143  DVEEDVSIVEEIQELLQEMKKEQ-------------QSGGGRNRRRVARGMGSGKYRMLK 189

Query: 861  RRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIR 1040
             RQVKIETE WE+AA EYRELLMDMCE KLAPNLPY+K++FLGWFEPL+  I + QE  R
Sbjct: 190  MRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQERCR 249

Query: 1041 KGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKL 1220
              K K +YAPYFDQLP+D M VITMHKL+GLL+TGGEHG ARVVQAACIIGDAIEQE ++
Sbjct: 250  MAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRI 309

Query: 1221 HKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIV 1400
            HKFLE TK     K+K   E +E ++         EQ +L KKVT+LIKKQKL AVR+IV
Sbjct: 310  HKFLEKTKKKNETKNKEDEEGDESNTVTT------EQEKLRKKVTDLIKKQKLPAVRRIV 363

Query: 1401 NSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
              QDDF PWG DARAKVG  +I L  QTAY+
Sbjct: 364  KGQDDFKPWGQDARAKVGSRVIELLTQTAYI 394


>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 1036

 Score =  332 bits (852), Expect = 2e-88
 Identities = 188/418 (44%), Positives = 247/418 (59%), Gaps = 2/418 (0%)
 Frame = +3

Query: 246  STSAVPCTFLDPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLY-L 422
            S  AV     DP I + K    NFL  P  +ST MWRN AKQAISR+ N    C   + +
Sbjct: 8    SFPAVLSQNFDPYIQIYKS-RSNFLINPCFDSTIMWRNFAKQAISRTPNL---CLRKFSI 63

Query: 423  SRPFCFLGFSQNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHM 602
            SR + FLG + +    +  K RP EL   K   F+E+G CR    LVKE          +
Sbjct: 64   SRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSFSEVGFCREGGSLVKEGIGERPVSGCL 123

Query: 603  GNLASGNGLSPKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXIN 782
            GN  + N + PKG+ S+ E E   STD++++V + DEI                      
Sbjct: 124  GNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSVFDEIQELVEEMRKEE----------K 173

Query: 783  GVKGTNGLSKLEKF-GGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPN 959
              K      + +K   G+   KY  L+ RQ+K+ETE+W+QAA EY+ELL DMC+ KLAPN
Sbjct: 174  RAKWRESHQRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPN 233

Query: 960  LPYIKTMFLGWFEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLL 1139
            LPY+K++FLGWFEP +  I E QELIR+GKC+ +Y  YFDQLP+D M +ITMHKL+G+L+
Sbjct: 234  LPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQLPADMMAIITMHKLMGMLM 293

Query: 1140 TGGEHGYARVVQAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQR 1319
            TG  HG  +VVQAAC +G+AIEQE ++H FLE  K       K+ G++ +    A  +  
Sbjct: 294  TGSGHGSVKVVQAACALGEAIEQEVRIHTFLEKAK-------KKKGDRSKKPDDAASDAE 346

Query: 1320 IQEQRRLGKKVTNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            IQEQ+ L K V NLIKKQK     KIV+SQ D  PWG++ RAKVG  LI L +QTAY+
Sbjct: 347  IQEQQHLRKNVNNLIKKQKRRQALKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYI 404


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  325 bits (832), Expect = 4e-86
 Identities = 192/399 (48%), Positives = 242/399 (60%)
 Frame = +3

Query: 297  KPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEI 476
            KP   +  PY   NS  MWRN+ KQ  SR+  K    +    +R + FLGF Q+S   + 
Sbjct: 20   KPTGLDINPY--HNSPIMWRNIIKQLSSRTPQKLLFSSK---NRTYSFLGFGQDSIFKDN 74

Query: 477  YKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLA 656
             K R +   S   +    +G     E L  ++ L+      + N  + N    K + S+A
Sbjct: 75   TKFRSLIPISCSNIV---MGFQNLGEYLPGDEFLSRP---LIKNQVNNNFCCRKSYASVA 128

Query: 657  EPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGIS 836
            E  AV STD +E+V +VDE++                      +  +          G+ 
Sbjct: 129  EAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTS----------GMG 178

Query: 837  ERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKI 1016
             RKY  LKRRQVK+ETE WEQAAKEY+ELL DMCE KLAPNLPY+K++FLGWFEPL+ KI
Sbjct: 179  HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 238

Query: 1017 DEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGD 1196
             E QEL  +GK KA+YA YF QLP+D M VITMHKL+GLL+TGG+HG ARVVQAA +IGD
Sbjct: 239  AEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGD 298

Query: 1197 AIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQK 1376
            AIEQE ++H FLE TK  K  KDK   ++E+G      E   QEQ +L KKVTNL+KKQK
Sbjct: 299  AIEQEVRIHNFLEKTKKQKAEKDK---QKEDG------EHVTQEQEKLRKKVTNLMKKQK 349

Query: 1377 LLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            L AV +IV  QDD  PWG DARAKVG  LI+L +QTAY+
Sbjct: 350  LRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYI 388


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  325 bits (832), Expect = 4e-86
 Identities = 192/399 (48%), Positives = 242/399 (60%)
 Frame = +3

Query: 297  KPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEI 476
            KP   +  PY   NS  MWRN+ KQ  SR+  K    +    +R + FLGF Q+S   + 
Sbjct: 20   KPTGLDINPY--HNSPIMWRNIIKQLSSRTPQKLLFSSK---NRTYSFLGFGQDSIFKDN 74

Query: 477  YKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLA 656
             K R +   S   +    +G     E L  ++ L+      + N  + N    K + S+A
Sbjct: 75   TKFRSLIPISCSNIV---MGFQNLGEYLPGDEFLSRP---LIKNQVNNNFCCRKSYASVA 128

Query: 657  EPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGIS 836
            E  AV STD +E+V +VDE++                      +  +          G+ 
Sbjct: 129  EAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQRMLTS----------GMG 178

Query: 837  ERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKI 1016
             RKY  LKRRQVK+ETE WEQAAKEY+ELL DMCE KLAPNLPY+K++FLGWFEPL+ KI
Sbjct: 179  HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 238

Query: 1017 DEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGD 1196
             E QEL  +GK KA+YA YF QLP+D M VITMHKL+GLL+TGG+HG ARVVQAA +IGD
Sbjct: 239  AEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGD 298

Query: 1197 AIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQK 1376
            AIEQE ++H FLE TK  K  KDK   ++E+G      E   QEQ +L KKVTNL+KKQK
Sbjct: 299  AIEQEVRIHNFLEKTKKQKAEKDK---QKEDG------EHVTQEQEKLRKKVTNLMKKQK 349

Query: 1377 LLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            L AV +IV  QDD  PWG DARAKVG  LI+L +QTAY+
Sbjct: 350  LRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYI 388


>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
            gi|223526525|gb|EEF28787.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 395

 Score =  322 bits (824), Expect = 3e-85
 Identities = 187/398 (46%), Positives = 245/398 (61%), Gaps = 16/398 (4%)
 Frame = +3

Query: 348  MWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSSSKKLKFA 527
            MWRN+AKQ ISR+ +K  S +S  LS  + FLG SQ  +  +  KL P+   SS      
Sbjct: 1    MWRNVAKQTISRAQSK--SLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYACSSL----- 53

Query: 528  ELGLCRSSELLVKEDSLAGSGWTHMGNLASGN-------------GLSPKGFVSLAEPEA 668
             +G CR  E++  ED +   G+  +GN  + N             G  P+G+VS+AE  +
Sbjct: 54   -VGFCRLGEIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVS 112

Query: 669  VLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSK---LEKFGGISE 839
              STDV+E+V +V+E+                    +  ++      K     K  G+  
Sbjct: 113  -SSTDVEEDVSVVEEVQ-----------------ELLQEMRREEAREKELIRRKERGMGS 154

Query: 840  RKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKID 1019
            +KY  LK+RQVKIETE WE A KEY+ELLMDMCE KLAPNLPY+K++FLGWFEP +  I 
Sbjct: 155  KKYQMLKKRQVKIETEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAIL 214

Query: 1020 EVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDA 1199
            + QELIR GK + ++APYFDQLP+D M VITMHKLV L++TGGEHG ARVV AAC+IG A
Sbjct: 215  KEQELIRVGKNRTAFAPYFDQLPADMMAVITMHKLVALVMTGGEHGCARVVAAACLIGAA 274

Query: 1200 IEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKL 1379
            IEQE ++HKFLE TK  +   D +  E++E + A      ++EQ +L KKVT+LIKKQKL
Sbjct: 275  IEQEVRIHKFLEKTK-KRNSNDSKKNEEDESNGA------VKEQEKLRKKVTDLIKKQKL 327

Query: 1380 LAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
             AVR+IV   DD   W  D +AKVG  LI L +QTAY+
Sbjct: 328  PAVRQIVKGHDDSQSWTQDTKAKVGSRLIELLIQTAYI 365


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score =  317 bits (813), Expect = 6e-84
 Identities = 190/410 (46%), Positives = 239/410 (58%)
 Frame = +3

Query: 264  CTFLDPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFL 443
            CT    S+ +      N    P  NS  MWRN+ KQ  SR+  K    +    +R + FL
Sbjct: 3    CTKTPISLTIKFNQFTNLETNPYQNSPIMWRNIVKQFSSRTPQKILLTSK---NRTYSFL 59

Query: 444  GFSQNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGN 623
            GF Q+S   +   LR     S     F E+G     E    ++ L       M +  S N
Sbjct: 60   GFGQDSVFKDKRILRSFIPVSCSNSGFLEMGFQNLGEF---DEFLRRPLLCAMKSQVSNN 116

Query: 624  GLSPKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNG 803
             +  K + S+AE  AV STD +E+V +V E+                             
Sbjct: 117  DICRKSYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFRRR--------- 167

Query: 804  LSKLEKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMF 983
             ++     GI  RKY ALKRRQVKIET+ WE AAKEYRELL DMCE KLAPNLPY+K++F
Sbjct: 168  -NQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAPNLPYVKSLF 226

Query: 984  LGWFEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYA 1163
            LGWFEPL+ KI + QEL  +GK KA+Y+ YF  LP+D M VITMHKL+GLL+TGGEHG A
Sbjct: 227  LGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGNA 286

Query: 1164 RVVQAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLG 1343
            RVVQAA  IGDAIEQE ++HKFLE T+  K  KD++    E+G  A +      EQ++L 
Sbjct: 287  RVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRK---MEDGEHATL------EQKKLH 337

Query: 1344 KKVTNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            KKVT+L+KKQKL AV +IV SQDD  PWG DA+AKVG  LI   +QTAY+
Sbjct: 338  KKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYI 387


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  317 bits (811), Expect = 1e-83
 Identities = 186/386 (48%), Positives = 234/386 (60%)
 Frame = +3

Query: 336  NSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSSSKK 515
            NS  MWRN+ KQ  SR+  K    +    +R + FLGF Q+S   +  K R +   S   
Sbjct: 31   NSPIMWRNIIKQLSSRTPQKLLFSSK---NRTYSFLGFGQDSVFKDNTKFRSLIPISCSN 87

Query: 516  LKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLSTDVDEE 695
            +    +G     E L  ++ L+     +  N  S +    K + S+AE  AV STD +E+
Sbjct: 88   IV---MGFQNLGEYLPGDEFLSRPLLKNQVN--SNDFCCRKSYASVAEAVAVSSTDAEED 142

Query: 696  VGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALKRRQVK 875
            V +VDE+                       +  +          G+  RKY  LKRRQVK
Sbjct: 143  VSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTS----------GMGHRKYQTLKRRQVK 192

Query: 876  IETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIRKGKCK 1055
            +ETE WEQAAKEY+ELL DMCE KLAPNLPY+K++FLGWFEPL+ KI E QEL  +GK K
Sbjct: 193  VETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSK 252

Query: 1056 ASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKLHKFLE 1235
            A+YA Y  QLP+D M VITMHKL+GLL+TGG+HG ARVVQAA +IGDAIEQE ++H FLE
Sbjct: 253  AAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLE 312

Query: 1236 NTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIVNSQDD 1415
             TK  K  KDK   ++E+G      E   QEQ +L KKVTNL+KKQKL AV +IV  QDD
Sbjct: 313  KTKKQKAEKDK---QKEDG------EHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDD 363

Query: 1416 FPPWGADARAKVGGHLINLFVQTAYV 1493
              PWG DA+AKVG  LI L +QTAY+
Sbjct: 364  SKPWGQDAKAKVGSRLIELLLQTAYI 389


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score =  315 bits (808), Expect = 2e-83
 Identities = 185/418 (44%), Positives = 248/418 (59%)
 Frame = +3

Query: 240  PLSTSAVPCTFLDPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLY 419
            P    A P  F D  +PL KP   +  P   S++  MWRN+AKQ ISRS  + S C    
Sbjct: 6    PTVILASPTRFFDHLVPLDKPLISSRNPVVQSSA--MWRNIAKQTISRSPVRLSVCRQ-- 61

Query: 420  LSRPFCFLGFSQNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTH 599
             SR    LGFS  S  PEI+  RP  +       F ++G  R+ E+    D     G+  
Sbjct: 62   -SRGL--LGFSSESIFPEIFIFRPSVIGPISSSGFHDMGYSRTCEIPAPGDFSGRPGFGF 118

Query: 600  MGNLASGNGLSPKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXI 779
            + +    +  SP+ +V+ AE  AV STD++E+  +VDE+                    +
Sbjct: 119  LKDECCFHRFSPRSYVNAAE--AVSSTDIEEDASVVDEVQELLREMKKEEKKEKVHLRRV 176

Query: 780  NGVKGTNGLSKLEKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPN 959
                      K ++  G+ E+KY +LKRRQVKIETE WE+AA EY+ELL DMCE KLAPN
Sbjct: 177  ----------KRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPN 226

Query: 960  LPYIKTMFLGWFEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLL 1139
            LPY+K++FLGWFEPL+  I + QEL R GK +A+YA Y DQLP+D + VITMHKL+GLL+
Sbjct: 227  LPYVKSLFLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPADMIAVITMHKLMGLLM 286

Query: 1140 TGGEHGYARVVQAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQR 1319
            TGG++G  +V+ AAC +GDAIEQE ++ +FLE TK       K+     EG     +E  
Sbjct: 287  TGGDNGCVKVIMAACTVGDAIEQEIRICRFLEKTK-------KKKENISEGVENVEKETT 339

Query: 1320 IQEQRRLGKKVTNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            ++E+  L +KV+ LIKKQKL AVR+I+NS D   PW  D RAKVG  LI LF++TAY+
Sbjct: 340  VKEEDWLKRKVSELIKKQKLPAVRQILNSHDASKPWSTDVRAKVGSRLIELFMKTAYI 397


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score =  310 bits (795), Expect = 8e-82
 Identities = 179/382 (46%), Positives = 227/382 (59%)
 Frame = +3

Query: 348  MWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSSSKKLKFA 527
            MWRN+ KQ  +R+  K    +    +  + +LGF  +S   +   LR     S     F 
Sbjct: 31   MWRNIVKQFSTRTPQKILLTSK---NHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFL 87

Query: 528  ELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSPKGFVSLAEPEAVLSTDVDEEVGLV 707
            E+G     E L  ++ L       M +  S N +  K + S+AE  AV STD +E+V +V
Sbjct: 88   EMGFQNLGEFLPGDEFLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDVSVV 147

Query: 708  DEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALKRRQVKIETE 887
             E+                       +  +          GI  RKY AL RRQVKIET+
Sbjct: 148  GEVQELLTELKKEEKKQFTFRRRKQRMLTS----------GIDRRKYPALMRRQVKIETQ 197

Query: 888  TWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIRKGKCKASYA 1067
             WEQAAKEYRELL DMCE KLAPNLPY+K++FLGWFEPL+ KI + QEL  +GK KA+Y+
Sbjct: 198  AWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAQEQELCIQGKSKAAYS 257

Query: 1068 PYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKLHKFLENTKM 1247
             YF  LP+D M VITMHKL+GLL+TGGEHG  RVVQAA  IGDAIEQE ++HKFLE T+ 
Sbjct: 258  KYFHLLPADMMAVITMHKLMGLLMTGGEHGNVRVVQAALTIGDAIEQEVRIHKFLEKTEK 317

Query: 1248 AKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIVNSQDDFPPW 1427
             K  KD+     E+G  A +      EQ++L KKVT+L+KKQKL AV +IV SQDD  PW
Sbjct: 318  HKAEKDR---NMEDGEHATL------EQKKLHKKVTSLMKKQKLRAVNQIVRSQDDSKPW 368

Query: 1428 GADARAKVGGHLINLFVQTAYV 1493
            G DA+AKVG  LI   +QTAY+
Sbjct: 369  GQDAKAKVGSRLIEFLLQTAYI 390


>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
            gi|550340797|gb|ERP62048.1| hypothetical protein
            POPTR_0004s11060g [Populus trichocarpa]
          Length = 475

 Score =  310 bits (794), Expect = 1e-81
 Identities = 192/410 (46%), Positives = 244/410 (59%), Gaps = 3/410 (0%)
 Frame = +3

Query: 273  LDPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFS 452
            +DP I   K P+   L      ST MWRN+AKQAI +  +K  +  S    R   FLG  
Sbjct: 14   IDPLIAFDKKPSILSL-INSKPSTVMWRNVAKQAILKPQSKSLNFPSF--PRTHSFLGAP 70

Query: 453  QNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGN--- 623
            Q     E  K   +  +SS +L F  +G   + E  + + S    G+   G+ ++GN   
Sbjct: 71   QEPIFFEKSKFHSVN-NSSPQLCFRRIGEISTHEDYMGKPSF---GFLRNGDSSNGNLCS 126

Query: 624  GLSPKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNG 803
            GL P+G+VS+AE  AV STDV++ V + +E+                        K    
Sbjct: 127  GLCPRGYVSVAE--AVSSTDVEDNVVVDEELQELLQDTRKEEEKE----------KDFRR 174

Query: 804  LSKLEKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMF 983
              +L    G+   KY AL+RRQVKIE E WEQAAKEY+ELL DMCEHKLAPNLPY+K +F
Sbjct: 175  RRRLHANRGMGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLF 234

Query: 984  LGWFEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYA 1163
            LGWFEPL+  I + QE IR+GK +  Y+PYFD LP+D M+VITMHKL  +++ GGEHG A
Sbjct: 235  LGWFEPLRDAIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCA 294

Query: 1164 RVVQAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLG 1343
            RVV AAC+IGDAIEQE ++H FLE T+  K   D  S    EG S AV    + E+ +L 
Sbjct: 295  RVVAAACMIGDAIEQEIRIHNFLEKTRKKKENAD-NSKNSVEGESPAV----MNEEEKLR 349

Query: 1344 KKVTNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            KKVT+LIKKQKL AVRKIV   DD   W  DA+AKVG  LI L +QTAY+
Sbjct: 350  KKVTDLIKKQKLPAVRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYI 399


>ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Populus trichocarpa]
            gi|550320354|gb|ERP51329.1| hypothetical protein
            POPTR_0017s14590g [Populus trichocarpa]
          Length = 987

 Score =  306 bits (785), Expect = 1e-80
 Identities = 184/387 (47%), Positives = 231/387 (59%), Gaps = 5/387 (1%)
 Frame = +3

Query: 348  MWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYKLRPIELSSSKKLKFA 527
            MWRN+AKQA  +S +K  +  S    R + FLG S+     E  K   +  ++S +L F 
Sbjct: 1    MWRNVAKQATLKSQSKSLNFPSF--PRTYSFLGASKEPIFFEKLKFHSLN-NTSPRLSFR 57

Query: 528  ELGLCRSSELLVKEDSLAGSGWTHMGNLASGNG-----LSPKGFVSLAEPEAVLSTDVDE 692
             +G     E+   ED +    +  + N  S NG       P+G+VS+ E  AV STDV++
Sbjct: 58   AIG-----EISTHEDFMGKPRFIFLRNSDSTNGNRCAGFCPRGYVSVVE--AVSSTDVED 110

Query: 693  EVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFGGISERKYFALKRRQV 872
             V   DE+                        K  +   +L    GI  RK+  L+RRQV
Sbjct: 111  NVYGADEVQELLPEMRKEEE------------KEEHFRRRLHANPGIGSRKHRVLRRRQV 158

Query: 873  KIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLKSKIDEVQELIRKGKC 1052
            KIE E WE A KEY+ELL DMCEHKLAPNLPY+K++FLGWFEP    I + QELIR GK 
Sbjct: 159  KIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRTGKS 218

Query: 1053 KASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACIIGDAIEQEAKLHKFL 1232
            +  YAPYFD LP+DKM+VI MH+L  +++TGGEHG ARVV AAC+IGDAIEQE ++H  L
Sbjct: 219  RQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNIL 278

Query: 1233 ENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIKKQKLLAVRKIVNSQD 1412
            E T+  K  K   S    EG S AV    ++EQ  L KKVT+LIKKQKL AVRKIV  +D
Sbjct: 279  EKTRKKK-EKANDSKNGVEGESPAV----MEEQENLRKKVTDLIKKQKLPAVRKIVKGKD 333

Query: 1413 DFPPWGADARAKVGGHLINLFVQTAYV 1493
            D  PW ADARAKVG  LI L +QTAY+
Sbjct: 334  DSKPWNADARAKVGSRLIELLLQTAYI 360


>ref|XP_006400090.1| hypothetical protein EUTSA_v10012544mg [Eutrema salsugineum]
            gi|557101180|gb|ESQ41543.1| hypothetical protein
            EUTSA_v10012544mg [Eutrema salsugineum]
          Length = 1030

 Score =  284 bits (726), Expect = 8e-74
 Identities = 181/406 (44%), Positives = 230/406 (56%)
 Frame = +3

Query: 276  DPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQ 455
            D  IP  KP      P P   S  MWR++AKQAISRS     +      S+   FL  SQ
Sbjct: 18   DHLIPFHKPLISCRNPVP--QSFPMWRSIAKQAISRSQ----AARLAVGSQTRGFLASSQ 71

Query: 456  NSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNGLSP 635
             S+L +  + R     S       E+G  R S +   E+     G     N +  NG   
Sbjct: 72   ESSLSKKLRFRCSVFGSFSDSGCHEMGFSRLSGVTRPEELPGRVGLRFSKNDSYFNGSFA 131

Query: 636  KGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKL 815
            + + S+AE   + STDV+EE  +VDE+                    +          K 
Sbjct: 132  RRYTSVAEE--ISSTDVEEEPSVVDEVQELLKEMKKEQKREDHRSWRM----------KK 179

Query: 816  EKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWF 995
            ++  G+   KY  L RRQVKIETE WE+AA EYRELL DMCE KLAPNLPY+K++ L WF
Sbjct: 180  QEHVGMGRGKYRNLWRRQVKIETEEWERAANEYRELLTDMCEKKLAPNLPYVKSLLLDWF 239

Query: 996  EPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQ 1175
            EP++  I + QEL R GK KA+YA Y DQLP+DK+ VITMHKLVG L+TGG++G  +VV 
Sbjct: 240  EPVRDVIAKDQELYRLGKSKATYAHYLDQLPADKIAVITMHKLVGHLMTGGDNGCVKVVH 299

Query: 1176 AACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVT 1355
            AAC +GDAIEQE ++  FL  T   K   ++ SGE E G++       ++EQ +L KKV 
Sbjct: 300  AACSVGDAIEQEVRICTFLGKTTKKKGDDNEESGEVENGTA-------VKEQDKLRKKVN 352

Query: 1356 NLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
             LIKKQKL AVRKI+ S D   PW ADARAKVG  LI L V+TAY+
Sbjct: 353  ELIKKQKLSAVRKILQSYDYTKPWTADARAKVGSRLIELLVRTAYI 398


>ref|XP_006289882.1| hypothetical protein CARUB_v10003497mg [Capsella rubella]
            gi|482558588|gb|EOA22780.1| hypothetical protein
            CARUB_v10003497mg [Capsella rubella]
          Length = 1014

 Score =  283 bits (725), Expect = 1e-73
 Identities = 185/409 (45%), Positives = 231/409 (56%), Gaps = 3/409 (0%)
 Frame = +3

Query: 276  DPSIPLLKPPNQNFLPYPPSNSTDMWRNLAKQAISRSS---NKGSSCTSLYLSRPFCFLG 446
            D  IPL KP   +  P P S S  MWRN+AKQAI RS+   N GS             LG
Sbjct: 18   DHLIPLHKPLISS--PNPVSQSFPMWRNIAKQAILRSAARLNVGSHT-----------LG 64

Query: 447  FSQNSTLPEIYKLRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASGNG 626
             SQ S   +    R   L S       E+G+   S +  +E+           N    NG
Sbjct: 65   ISQESVFSKNLSFRCSVLGSISGSPCHEMGVRHLSGITRREE--------FFNNERGLNG 116

Query: 627  LSPKGFVSLAEPEAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGL 806
               +GF S+AE   VLSTDV+EE   VDE+                              
Sbjct: 117  TLARGFTSVAEE--VLSTDVEEEPE-VDELLKEMKKEKKRESHRSWRM------------ 161

Query: 807  SKLEKFGGISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFL 986
             K ++  G+   K+  L RRQVKIETE WE+AA EYRELL DMCE KLAPNLPY+K++FL
Sbjct: 162  -KKQEHLGMGRTKFQNLWRRQVKIETEEWERAAAEYRELLTDMCERKLAPNLPYVKSLFL 220

Query: 987  GWFEPLKSKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYAR 1166
            GWFEPL+  I + QE+   GK KA+YA Y DQLP+D + VITMHKL+G L+TGGE+G  +
Sbjct: 221  GWFEPLRDAIAKEQEMYSLGKSKATYAHYLDQLPADMIAVITMHKLMGHLMTGGENGCIK 280

Query: 1167 VVQAACIIGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGK 1346
            VVQAAC +GDAIEQE ++  FL+ T+  K   ++ SGE E G++       ++EQ +L K
Sbjct: 281  VVQAACTVGDAIEQEIRICTFLDKTRKKKGDDNEESGEVENGTA-------MKEQDKLRK 333

Query: 1347 KVTNLIKKQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
             V  LIKKQKL AVRKI+ S D   PW AD RAKVG  LI L V+TAY+
Sbjct: 334  MVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYI 382


>ref|XP_004304185.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 1262

 Score =  282 bits (722), Expect = 2e-73
 Identities = 179/402 (44%), Positives = 228/402 (56%), Gaps = 6/402 (1%)
 Frame = +3

Query: 306  NQNFLPYPPSN-STDMWRNLAKQAISRSSNKGSSCTSLYLSRPFCFLGFSQNSTLPEIYK 482
            N +  P  PS  ST ++R+L KQAISR        T     +P   LGF Q S   +   
Sbjct: 284  NPSISPQNPSMISTTVFRSLTKQAISR--------TQRLPLKPL--LGFCQRSDFFQ--- 330

Query: 483  LRPIELSSSKKLKFAELGLCRSSELLVKEDSLAGSGWTHMGNLASG-NGLSPKGFVSLAE 659
              PI +SS   L    +G C+                 HM   + G +   PKG+ S+AE
Sbjct: 331  -HPILVSSCSTL----VGSCQID---------------HMQRPSFGFSDFCPKGYASVAE 370

Query: 660  P----EAVLSTDVDEEVGLVDEINXXXXXXXXXXXXXXXXXXXINGVKGTNGLSKLEKFG 827
                 +A  STD +EEV +VDE+                    I   +            
Sbjct: 371  AISSTDASSSTDAEEEVCVVDELQEILKEMKKEDKRQSAYRWRIEQAR----------VR 420

Query: 828  GISERKYFALKRRQVKIETETWEQAAKEYRELLMDMCEHKLAPNLPYIKTMFLGWFEPLK 1007
            G+ E KY  L+RRQ+KIETE WE+AA EYRELLMDMCE KLAPNLPY+K++FLGWFEPL 
Sbjct: 421  GMGEGKYLMLRRRQIKIETEAWERAADEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLC 480

Query: 1008 SKIDEVQELIRKGKCKASYAPYFDQLPSDKMTVITMHKLVGLLLTGGEHGYARVVQAACI 1187
            + I + Q+L R+GK K +Y PY D+LP+D M VITMHKL+GLL+T GEHG  RVV AAC 
Sbjct: 481  NAITKEQDLCRQGKNKTAYGPYMDKLPADMMAVITMHKLMGLLMT-GEHGSCRVVSAACT 539

Query: 1188 IGDAIEQEAKLHKFLENTKMAKVPKDKRSGEQEEGSSAAVEEQRIQEQRRLGKKVTNLIK 1367
            IG+AIEQE K+H FLE TK  KV KD+ +GE +           ++E  +L KKVTNLI+
Sbjct: 540  IGEAIEQEVKIHNFLERTKKKKVGKDQETGESDAA---------MKENEKLNKKVTNLIE 590

Query: 1368 KQKLLAVRKIVNSQDDFPPWGADARAKVGGHLINLFVQTAYV 1493
            K+KL AVR IV   DD   W  +A+AKVG  +I L  QTA++
Sbjct: 591  KKKLQAVRHIVRGHDDSKAWSQEAKAKVGSRMIELLTQTAFI 632