BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00016513
         (3827 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1429   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1407   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1405   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1405   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1404   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1401   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1399   0.0  
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1398   0.0  
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe...  1391   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1371   0.0  
gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1367   0.0  
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...  1363   0.0  
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...  1362   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1358   0.0  
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...  1357   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1354   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1352   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...  1348   0.0  
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...  1347   0.0  
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...  1347   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1429 bits (3699), Expect = 0.0
 Identities = 698/900 (77%), Positives = 783/900 (87%), Gaps = 5/900 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD----DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKY 3204
            YA+AAEAIA   SE+D    DE++ELV E+   D         + +   KL+ G+ Q K+
Sbjct: 93   YASAAEAIA---SEEDMSGVDEVQELVEEVNKGD---------KLEKQPKLIGGVAQGKH 140

Query: 3203 GILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQ 3024
             +L++RQ+KMETEAWE AAKEY+ELL+DMC+QKLAPNLPY+KSLFLGWFEPLR+ IAAEQ
Sbjct: 141  NVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQ 200

Query: 3023 ESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEH 2844
            +  K+GK+RAAYAPY+  LPADMMAVITMHK+M LLM+G G+GSA+VV AAC IGEAIEH
Sbjct: 201  DLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEH 260

Query: 2843 EVRIHRFFEKAKNKKKDTTTEDG-SDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDH 2667
            EVRI RF EK K K   +   DG S+P T  K QE+LRKKV+ L+K+  +++VRQIVK  
Sbjct: 261  EVRIQRFMEKTKKKSASSNNPDGGSNPVT--KEQEKLRKKVSMLMKKQKLQQVRQIVKRQ 318

Query: 2666 DDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKN 2487
            DD KPWGQ+   KVG+RLI+LL ETAYIQPPA+Q+ + PPD+RPAF+HT +TV+ +TQK 
Sbjct: 319  DDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKG 378

Query: 2486 CRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAK 2307
             RRYG+IECDPLVRKGLEKTARHMVIPYMPMLVPPL W GYDKGAY FLPSYVMR HGA+
Sbjct: 379  TRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGAR 438

Query: 2306 QQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPL 2127
            QQREA+KRAP K L+  F AL+TLGNTKWR+NKRVL +IDRIW+SGGR+ADLVDRED+PL
Sbjct: 439  QQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPL 498

Query: 2126 PEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDF 1947
            PEEPDTEDE                NSERHSQRCD ELKLAVARKM+DEDGF+YPHNLDF
Sbjct: 499  PEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDF 558

Query: 1946 RGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRI 1767
            RGRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR+
Sbjct: 559  RGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRV 618

Query: 1766 AFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQ 1587
            AF ENHL+DIFDSADRPLEG+RWWLSAEDPFQCL+ CIN++EALRS SPE  ISH+PVHQ
Sbjct: 619  AFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQ 678

Query: 1586 DGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNA 1407
            DGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIAARVLDIM+ D+QKDPA EPNA
Sbjct: 679  DGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNA 738

Query: 1406 LRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAK 1227
            LRA+ LI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAI D+ E+F+ +CYAAK
Sbjct: 739  LRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAK 798

Query: 1226 TTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSL 1047
            TTLTALGEMFEAARSIMSWLGDCAK+IASENHPVRW TPLGLPVVQPYRK GRHLIKTSL
Sbjct: 799  TTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSL 858

Query: 1046 QVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHAC 867
            QVL+LQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT +AC+KAGLNFAGVHDSYWTHAC
Sbjct: 859  QVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHAC 918

Query: 866  DVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            DVDEMNRILREKFVELY +PILE+L+E FQKSFP L FPPLPERGDFDLREVLESPYFFN
Sbjct: 919  DVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1407 bits (3641), Expect = 0.0
 Identities = 689/898 (76%), Positives = 774/898 (86%), Gaps = 3/898 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAI  TS ED DEI+EL+ E+ K+++  K+++       PK  K + GM   KY 
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANL------QPKQPKTIGGMGVGKYN 167

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
             L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIAAEQ+
Sbjct: 168  FLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHE 287

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDD 2661
             RIHRF EK K K    + +    P    K +ERLRKKV  L+K+  +R+VR+IVK  DD
Sbjct: 288  ARIHRFLEKTK-KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 346

Query: 2660 MKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCR 2481
             KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  R
Sbjct: 347  EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404

Query: 2480 RYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQ 2301
            RYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W+GYDKG Y FLPSY+MRTHGAKQQ
Sbjct: 405  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464

Query: 2300 REAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPE 2121
            REAVKR P KQL+ VF ALDTLGNTKWRVN++VL I+DRIW+SGGR+ADLVDRED+PLPE
Sbjct: 465  REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPE 524

Query: 2120 EPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRG 1941
             PDTEDE                N ERHSQRCD ELKLAVARKM+DEDGFYYPHNLDFRG
Sbjct: 525  APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584

Query: 1940 RAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAF 1761
            RAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+YGGGVDKLSY+GR+AF
Sbjct: 585  RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644

Query: 1760 AENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDG 1581
            +ENHL+DIFDSA+RPLEGKRWWL AEDPFQCL+ CINIAEALRSPSPE  IS++P+HQDG
Sbjct: 645  SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDG 704

Query: 1580 SCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALR 1401
            SCNGLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +R
Sbjct: 705  SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMR 764

Query: 1400 AKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTT 1221
            A+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER  IEDDNELFA ACYAAKTT
Sbjct: 765  ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTT 824

Query: 1220 LTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQV 1041
            LTALGEMFEAARSIMSWLGDCAKIIA ENHPVRWTTPLGLPVVQPYRK GRHLIKTSLQ+
Sbjct: 825  LTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 884

Query: 1040 LTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDV 861
            LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK++GL+FAGVHDSYWTHACDV
Sbjct: 885  LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDV 944

Query: 860  DEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            D+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 945  DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 690/899 (76%), Positives = 778/899 (86%), Gaps = 4/899 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAIA TS ED DEI+EL+ E+ K+++  K+++       PK  K + GM   KY 
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNL------QPKQPKTIGGMGVGKYN 167

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
            +L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIAAEQ+
Sbjct: 168  LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHE 287

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSD-PHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHD 2664
             RIHRF EK K  K +  + D  D P    K +ERLRKKV  L+K+  +++VR+IVK  D
Sbjct: 288  ARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQD 345

Query: 2663 DMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNC 2484
            D KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  
Sbjct: 346  DEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGS 403

Query: 2483 RRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQ 2304
            RRYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W+GYDKGAY FLPSY+MRTHGAKQ
Sbjct: 404  RRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQ 463

Query: 2303 QREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLP 2124
            QREAVKR P KQL+ VF ALDTLGNTKWR+N++VL I+DRIW+SGGR+ADLVDRED+PLP
Sbjct: 464  QREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLP 523

Query: 2123 EEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFR 1944
            EEPD EDE                N ERHSQRCD ELKLAVARKM+DEDGFYYPHNLDFR
Sbjct: 524  EEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFR 583

Query: 1943 GRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIA 1764
            GRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN+YGGGVDKLSY+GR+A
Sbjct: 584  GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVA 643

Query: 1763 FAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQD 1584
            F+ENH++DIFDSA+RPLEGKRWWL AEDPFQCL+ CINIAEALRSPSPE  IS++P+HQD
Sbjct: 644  FSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQD 703

Query: 1583 GSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNAL 1404
            GSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +
Sbjct: 704  GSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVM 763

Query: 1403 RAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKT 1224
            RA+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  IEDDNELFA ACYAAKT
Sbjct: 764  RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKT 823

Query: 1223 TLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQ 1044
            TLTALGEMFEAARSIMSWLGDCAKIIA ENHPVRWTTPLGLPVVQPYRK GRHLIKTSLQ
Sbjct: 824  TLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ 883

Query: 1043 VLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACD 864
            +LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK++GL+FAGVHDSYWTHA D
Sbjct: 884  ILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASD 943

Query: 863  VDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            VD+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 944  VDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 688/898 (76%), Positives = 774/898 (86%), Gaps = 3/898 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAI  TS ED DEI+EL+ E+ K+++  K+++       PK  K + GM   KY 
Sbjct: 114  YGSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANL------QPKQPKTIGGMGVGKYN 167

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
             L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIAAEQ+
Sbjct: 168  FLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHE 287

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDD 2661
             RIHRF EK K K    + +    P    K +ERLRKKV  L+K+  +R+VR+IVK  DD
Sbjct: 288  ARIHRFLEKTK-KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 346

Query: 2660 MKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCR 2481
             KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  R
Sbjct: 347  EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSR 404

Query: 2480 RYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQ 2301
            RYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W+GYDKG Y FLPSY+MRTHGAKQQ
Sbjct: 405  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQ 464

Query: 2300 REAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPE 2121
            REAVKR P KQL+ VF ALDTLGNTKWRVN++VL I++RIW+SGGR+ADLVDRED+PLPE
Sbjct: 465  REAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPE 524

Query: 2120 EPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRG 1941
             PDTEDE                N ERHSQRCD ELKLAVARKM+DEDGFYYPHNLDFRG
Sbjct: 525  APDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRG 584

Query: 1940 RAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAF 1761
            RAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGLRWLKIHLAN+YGGGVDKLSY+GR+AF
Sbjct: 585  RAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAF 644

Query: 1760 AENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDG 1581
            +ENHL+DIFDSA+RPLEGKRWWL AEDPFQCL+ CINIAEALRSPSPE  IS++P+HQDG
Sbjct: 645  SENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDG 704

Query: 1580 SCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALR 1401
            SCNGLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +R
Sbjct: 705  SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMR 764

Query: 1400 AKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTT 1221
            A+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER  IEDDNELFA ACYAAKTT
Sbjct: 765  ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTT 824

Query: 1220 LTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQV 1041
            LTALGEMFEAARSIMSWLGDCAKIIA ENHPVRWTTPLGLPVVQPYRK GRHLIKTSLQ+
Sbjct: 825  LTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 884

Query: 1040 LTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDV 861
            LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK++GL+FAGVHDSYWTHACDV
Sbjct: 885  LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDV 944

Query: 860  DEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            D+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 945  DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1404 bits (3633), Expect = 0.0
 Identities = 689/899 (76%), Positives = 778/899 (86%), Gaps = 4/899 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAIA TS ED DEI+EL+ E+ K+++  K+++       PK  K + GM   KY 
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNL------QPKQPKTIGGMGVGKYN 167

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
            +L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIAAEQ+
Sbjct: 168  LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 228  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHE 287

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSD-PHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHD 2664
             RIHRF EK K  K +  + D  D P    K +ER+RKKV  L+K+  +++VR+IVK  D
Sbjct: 288  ARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQD 345

Query: 2663 DMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNC 2484
            D KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  
Sbjct: 346  DEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGS 403

Query: 2483 RRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQ 2304
            RRYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W+GYDKGAY FLPSY+MRTHGAKQ
Sbjct: 404  RRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQ 463

Query: 2303 QREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLP 2124
            QREAVKR P KQL+ VF ALDTLGNTKWR+N++VL I+DRIW+SGGR+ADLVDRED+PLP
Sbjct: 464  QREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLP 523

Query: 2123 EEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFR 1944
            EEPD EDE                N ERHSQRCD ELKLAVARKM+DEDGFYYPHNLDFR
Sbjct: 524  EEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFR 583

Query: 1943 GRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIA 1764
            GRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN+YGGGVDKLSY+GR+A
Sbjct: 584  GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVA 643

Query: 1763 FAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQD 1584
            F+ENH++DIFDSA+RPLEGKRWWL AEDPFQCL+ CINIAEALRSPSPE  IS++P+HQD
Sbjct: 644  FSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQD 703

Query: 1583 GSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNAL 1404
            GSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +
Sbjct: 704  GSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVM 763

Query: 1403 RAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKT 1224
            RA+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  IEDDNELFA ACYAAKT
Sbjct: 764  RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKT 823

Query: 1223 TLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQ 1044
            TLTALGEMFEAARSIMSWLGDCAKIIA ENHPVRWTTPLGLPVVQPYRK GRHLIKTSLQ
Sbjct: 824  TLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ 883

Query: 1043 VLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACD 864
            +LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK++GL+FAGVHDSYWTHA D
Sbjct: 884  ILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASD 943

Query: 863  VDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            VD+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 944  VDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1401 bits (3626), Expect = 0.0
 Identities = 688/898 (76%), Positives = 776/898 (86%), Gaps = 3/898 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAIA TS ED DEI+EL+ E+ K+++  K+++       PK  K V GM   KY 
Sbjct: 106  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNL------QPKQPKTVGGMGIGKYN 159

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
            +L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPY+KSLFLGWFEPLR+AIAAEQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQK 219

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDD 2661
             RIHRF EK K    D + E+ +      K +ERLRKKV  L+K+  +++VR+IVK  DD
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETAGD--IMKERERLRKKVKILMKKQKLQQVRKIVKQQDD 337

Query: 2660 MKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCR 2481
             KPWGQ+N  KVG +LIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  R
Sbjct: 338  EKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSR 395

Query: 2480 RYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQ 2301
            RYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W GYD+GAY FLPSY+MRTHGAKQQ
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455

Query: 2300 REAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPE 2121
            REAVKR P KQL+ VF ALDTLGNTKWRVNKRVL I+DRIW+SGGR+ADLVDRED+PLPE
Sbjct: 456  REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515

Query: 2120 EPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRG 1941
            EPDTEDE                N ERHSQRCD ELKLAVARKM+DE+GFYYPHNLDFRG
Sbjct: 516  EPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRG 575

Query: 1940 RAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAF 1761
            RAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLRWLKIHLAN+YGGGVDKLSY+GR AF
Sbjct: 576  RAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAF 635

Query: 1760 AENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDG 1581
            +ENH++DIFDSADRPLEG+RWWL AEDPFQCL+ CINI+EALRSPSPE  ISH+P+HQDG
Sbjct: 636  SENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDG 695

Query: 1580 SCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALR 1401
            SCNGLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +R
Sbjct: 696  SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMR 755

Query: 1400 AKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTT 1221
            A+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AIEDDNELF+ ACYAAKTT
Sbjct: 756  ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTT 815

Query: 1220 LTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQV 1041
            LTALGEMFEAARSIMSWLGDCAKIIA EN PVRWTTPLGLPVVQPYRK GRHLIKTSLQ+
Sbjct: 816  LTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 875

Query: 1040 LTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDV 861
            LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT I CK+AGL+FAGVHDSYWTHA DV
Sbjct: 876  LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDV 935

Query: 860  DEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            D+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 936  DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1399 bits (3620), Expect = 0.0
 Identities = 687/899 (76%), Positives = 776/899 (86%), Gaps = 4/899 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAIA TS ED DEI+EL+ E+ K+++  K+++       PK  K + GM   KY 
Sbjct: 114  YGSAAEAIASTSEEDTDEIQELIEEMNKENEALKTNL------QPKQPKTIGGMGVGKYN 167

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
            +L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIAAEQ+
Sbjct: 168  LLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQK 227

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R A AP++  LPA+MMAVITMHK+M  LM+G G GSA+VV AA  IGEAIEHE
Sbjct: 228  LCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHE 287

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSD-PHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHD 2664
             RIHRF EK K  K +  + D  D P    K +ER+RKKV  L+K+  +++VR+IVK  D
Sbjct: 288  ARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQD 345

Query: 2663 DMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNC 2484
            D KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  +T K  
Sbjct: 346  DEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGS 403

Query: 2483 RRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQ 2304
            RRYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W+GYDKGAY FLPSY+MRTHGAKQ
Sbjct: 404  RRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQ 463

Query: 2303 QREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLP 2124
            QREAVKR P KQL+ VF ALDTLGNTKWR+N++VL I+DRIW+SGGR+ADLVDRED+PLP
Sbjct: 464  QREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLP 523

Query: 2123 EEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFR 1944
            EEPD EDE                N ERHSQRCD ELKLAVARKM+DEDGFYYPHNLDFR
Sbjct: 524  EEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFR 583

Query: 1943 GRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIA 1764
            GRAYPMHP+LNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN+YGGGVDKLSY+GR+A
Sbjct: 584  GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVA 643

Query: 1763 FAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQD 1584
            F+ENH++DIFDSA+RPLEGKRWWL AEDPFQCL+ CINIAEALRSPSPE  IS++P+HQD
Sbjct: 644  FSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQD 703

Query: 1583 GSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNAL 1404
            GSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +
Sbjct: 704  GSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVM 763

Query: 1403 RAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKT 1224
            RA+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  IEDDNELFA ACYAAKT
Sbjct: 764  RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKT 823

Query: 1223 TLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQ 1044
            TLTALGEMFEAARSIMSWLGDCAKIIA ENHPVRWTTPLGLPVVQPYRK GRHLIKTSLQ
Sbjct: 824  TLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ 883

Query: 1043 VLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACD 864
            +LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK++GL+FAGVHDSYWTHA D
Sbjct: 884  ILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASD 943

Query: 863  VDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            VD+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 944  VDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 688/898 (76%), Positives = 776/898 (86%), Gaps = 3/898 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDDEIRELVREI-KDHDTRKSSIPRPRADHPK--KLVEGMTQRKYG 3201
            Y +AAEAIA TS ED DEI+EL+ E+ K+++  K+++       PK  K V GM   KY 
Sbjct: 106  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNL------QPKQPKTVGGMGIGKYN 159

Query: 3200 ILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQE 3021
            +L++RQ+K+ETEAWE AAKEYQELL DMC+QKLAPNLPY+KSLFLGWFEPL++AIAAEQ+
Sbjct: 160  LLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLKDAIAAEQK 219

Query: 3020 SFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHE 2841
               EGK+R AYAP++  LPA+MMAVITMHK+M LLM+G G GSA+VV AA  IGEAIEHE
Sbjct: 220  LCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHE 279

Query: 2840 VRIHRFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDD 2661
             RIHRF EK K    D + E+ +      K +ERLRKKV  L+K+  +++VR+IVK  DD
Sbjct: 280  ARIHRFLEKTKKNALDGSLEETAGD--IMKERERLRKKVKILMKKQKLQQVRKIVKQQDD 337

Query: 2660 MKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCR 2481
             KPWGQ+N  KVG RLIQ+L ETAYIQPP +Q+ + PPD+RPAF+HT +TV  DT K  R
Sbjct: 338  EKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAFMHTLKTV--DTVKGSR 395

Query: 2480 RYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQ 2301
            RYG+I+CDPLVRKGL+KTARHMVIPYMPMLVPP  W GYD+GAY FLPSY+MRTHGAKQQ
Sbjct: 396  RYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQ 455

Query: 2300 REAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPE 2121
            REAVKR P KQL+ VF ALDTLGNTKWRVNKRVL I+DRIW+SGGR+ADLVDRED+PLPE
Sbjct: 456  REAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPE 515

Query: 2120 EPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRG 1941
            EPDTE+E                N ERHSQRCD ELKLAVARKM+DE+GFYYPHNLDFRG
Sbjct: 516  EPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRG 575

Query: 1940 RAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAF 1761
            RAYPMHP+LNHLGSDLCRGILEF+EGRPLGKSGLRWLKIHLAN+YGGGVDKLS +GR AF
Sbjct: 576  RAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSCEGRAAF 635

Query: 1760 AENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDG 1581
            +ENH++DIFDSADRPLEG+RWWL AEDPFQCL+ CI+I+EALRSPSPE  ISH+P+HQDG
Sbjct: 636  SENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCISISEALRSPSPETSISHMPIHQDG 695

Query: 1580 SCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALR 1401
            SCNGLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVLDIM+ D+ KDPA +PN +R
Sbjct: 696  SCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMR 755

Query: 1400 AKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTT 1221
            A+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AIEDDNELFA ACYAAKTT
Sbjct: 756  ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFAAACYAAKTT 815

Query: 1220 LTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQV 1041
            LTALGEMFEAARSIMSWLGDCAKIIA EN PVRWTTPLGLPVVQPYRK GRHLIKTSLQ+
Sbjct: 816  LTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQI 875

Query: 1040 LTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDV 861
            LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMT IACK+AGL+FAGVHDSYWTHA DV
Sbjct: 876  LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKEAGLSFAGVHDSYWTHASDV 935

Query: 860  DEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            D+MN+ILREKFVELY+ PILE+L+E+FQ+SFP+L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 936  DQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993


>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1391 bits (3601), Expect = 0.0
 Identities = 701/1007 (69%), Positives = 794/1007 (78%), Gaps = 40/1007 (3%)
 Frame = -1

Query: 3587 MWRRALKIGSSLRRLKVSSDSSIALPAS-----QRSSSFL-------------NRLLVHS 3462
            MWR   K  +S R+  +SS S    P+S      + SSFL             NR+LV  
Sbjct: 1    MWRNLAKQVAS-RKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMG 59

Query: 3461 SNSV-------ENWXXXXXXXXXXXXXXXXXXXFHQHYATAAEAIAVTSSEDDDEIRELV 3303
               V       E                     + + YA+ AEAIA T  E+D    E +
Sbjct: 60   FRQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEI 119

Query: 3302 REIKDHDTRKSSIPRPRADHPKKLVEGMTQRKYGILKKRQVKMETEAWELAAKEYQELLT 3123
            +E+ +   R++++       PK++V GM   KY +L+KRQ+K+ETEAW+ AAKEYQELL 
Sbjct: 120  QEMLEDLIRENNMVESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLA 179

Query: 3122 DMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQESFKEGKSRAAYAPYWGLLPADMMAVI 2943
            DMC+QKLAPNLPY+KSLFLGWFEPLR+AIAA+Q+S K+  SR ++APY+  LPAD MAVI
Sbjct: 180  DMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVI 239

Query: 2942 TMHKMMALLMSGTGH-GSAKVVHAACQIGEAIEHEVRIHRFFEKAKNKKK--DTTTEDGS 2772
            TMHK+M LLM+  G  GS +VV AAC IGEAIEHEVRIHRF EK K KK   D   E  S
Sbjct: 240  TMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADS 299

Query: 2771 DPHTS------------AKTQERLRKKVNTLIKQHHVRKVRQIVKDHDDMKPWGQENQAK 2628
             P T              K QERLRKKVN LIK+  +++VR IVK+ +D+KPWGQE   K
Sbjct: 300  VPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVK 359

Query: 2627 VGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCRRYGIIECDPLV 2448
            VG RLIQLL +TAYIQPP +QI + PPD+RPAF+H  +T+  DTQK  RRYG+IECDP+V
Sbjct: 360  VGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIV 419

Query: 2447 RKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQREAVKRAPGKQ 2268
            RKG+EKTARHMV+PYMPMLVPP+ W GYD+GAY FLPSYVMRTHGAKQQRE VKR P KQ
Sbjct: 420  RKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQ 479

Query: 2267 LDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPEEPDTEDEXXXX 2088
            L+ VF ALDTLG+TKWRVNKRVL +IDRIW+SGGR+ADLVDRED+PLPEEPDTEDE    
Sbjct: 480  LEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIR 539

Query: 2087 XXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRGRAYPMHPHLNH 1908
                        NSERHSQRCD ELKLA +RKM+DE+GFYYPHNLDFRGRAYPMHP+LNH
Sbjct: 540  KWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 599

Query: 1907 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAFAENHLDDIFDS 1728
            LGSD+CRGILEF+EGR LGKSGLRWLKIHLANLY GGVDKLS+D R AF ENH+D+IFDS
Sbjct: 600  LGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDS 659

Query: 1727 ADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDGSCNGLQHYAAL 1548
            ADRPLEG+RWWL AEDPFQCL+ACIN+ EALRSPSPE  IS++PVHQDGSCNGLQHYAAL
Sbjct: 660  ADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAAL 719

Query: 1547 GRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALRAKFLINQVDRK 1368
            GRDKLGAAAVNLV GDKPADVYSGIAARVLDIMR D++KDPA  PNAL A+ LINQVDRK
Sbjct: 720  GRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRK 779

Query: 1367 LVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTTLTALGEMFEAA 1188
            LVKQTVMTSVYGVTY+GARDQIKRRLKER +I DD  LFA ACYAA+TTLTALGEMFEAA
Sbjct: 780  LVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAA 839

Query: 1187 RSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETDKVM 1008
            RSIMSWLG+CAK+IASEN PVRW TPLGLPVVQPYR+ GRHLIKTSLQVLTLQRETDKVM
Sbjct: 840  RSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVM 899

Query: 1007 AKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKF 828
             KRQRTAFPPNFVHSLDGSHMMMT +ACKKAGLNFAGVHDSYWTHACD+DEMNRILREKF
Sbjct: 900  VKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKF 959

Query: 827  VELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            VELYE PILE+L+E FQ+SFP L FPPLP+RGDFDLR+VLESPYFFN
Sbjct: 960  VELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1371 bits (3549), Expect = 0.0
 Identities = 677/903 (74%), Positives = 767/903 (84%), Gaps = 8/903 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD----DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKY 3204
            YA+ AEA++ T  E+D    DEI+EL+ E+K  + R+ +  R       K+  GM Q +Y
Sbjct: 138  YASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRREK---LKMERGMEQGRY 194

Query: 3203 GILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQ 3024
              L++RQVK+ETEAWELAAKEY+ELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AI  EQ
Sbjct: 195  LRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQ 254

Query: 3023 ESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEH 2844
            E  + GK++AAYAPY+  LPADMM+VITMHK++ LLM+G  HGS +VV AAC IG+AIE 
Sbjct: 255  ELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQ 314

Query: 2843 EVRIHRFFEKAKNKK--KDTTTEDGS-DPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVK 2673
            EVRIH F EK K KK  KD   E G  DP      QE+LRKKV  L+K+  +   RQIVK
Sbjct: 315  EVRIHNFLEKTKRKKVGKDKNVEGGGFDP--VIHEQEKLRKKVTNLMKKQKLHAARQIVK 372

Query: 2672 DHDDMKPWGQENQAKVGARLIQLLTETAYIQPPA-NQIVEDPPDVRPAFIHTTQTVLTDT 2496
             HD+ KPWG E +AKVG+RLI+LL +TAYIQPP  NQ+ + PPD+RPAF+HT +TV+ + 
Sbjct: 373  GHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREA 432

Query: 2495 QKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTH 2316
            +K  RR+G+IECDPLV+KGLE+TARHMVIPY+PMLVPPLKW GYDKGA+ FLPSYVMRTH
Sbjct: 433  KKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTH 492

Query: 2315 GAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDRED 2136
            GA+QQREAVKRAP  QL+ VF AL+TLGNTKWR+NKR+ +++DRIW+ GG +ADLVDR D
Sbjct: 493  GARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRND 552

Query: 2135 IPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHN 1956
            +PLPE+PDTEDE                NSERHSQRCD ELKLAVARKM+DEDGF+YPHN
Sbjct: 553  VPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHN 612

Query: 1955 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYD 1776
            LDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG SGL WLKIHLANL+ GGVDKLS++
Sbjct: 613  LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHE 672

Query: 1775 GRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIP 1596
            GRI F ENHLDDIFDSADRPLEGKRWWL+AEDPFQ L+ACIN++EALRS SPE  ISHIP
Sbjct: 673  GRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIP 732

Query: 1595 VHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVE 1416
            VHQDGSCNGLQHYAALGRD+LGA AVNLV G+KPADVYSGIAARVLDIM+ D++KDPA+ 
Sbjct: 733  VHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIF 792

Query: 1415 PNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACY 1236
            P+ALRA+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AI DD ELF  ACY
Sbjct: 793  PDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACY 852

Query: 1235 AAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIK 1056
            AAK TLTALGEMF+AARSIMSWLGDCAKIIASEN PVRWTTPLGLPVVQPYRK GRHLIK
Sbjct: 853  AAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIK 912

Query: 1055 TSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWT 876
            TSLQVLTLQRET+ +M KRQRTAFPPNFVHSLDGSHMMMT IACKKAGLNFAGVHDSYWT
Sbjct: 913  TSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWT 972

Query: 875  HACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPY 696
            HACDVDEMNR+LREKFV+LYE PILE+L+E+FQ+SFP LEFPPLPERGDFDLREVLESPY
Sbjct: 973  HACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPY 1032

Query: 695  FFN 687
            FFN
Sbjct: 1033 FFN 1035


>gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508709657|gb|EOY01554.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 996

 Score = 1367 bits (3538), Expect = 0.0
 Identities = 671/904 (74%), Positives = 756/904 (83%), Gaps = 9/904 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSE--DDDEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKYGI 3198
            YA+AAEA+  T  +    +EI EL+  +   + + S + +P     KK+ EGM   KY  
Sbjct: 99   YASAAEAVISTEEDMSGSEEIHELMEAMAREEKKMSFLVQP-----KKVAEGMGVAKYNT 153

Query: 3197 LKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQES 3018
            LKKRQ+K+ETEAWE AAKEYQELL DMC+ KLAPNLPY+KSLFLGWFEPLR++I  EQE 
Sbjct: 154  LKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQEL 213

Query: 3017 FKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGT-GHGSAKVVHAACQIGEAIEHE 2841
             KE   R ++A Y+  L ADMMAV+TMHK+M LLM+ T G G  +VV AACQIGEAIEHE
Sbjct: 214  CKEN-CRISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIRVVQAACQIGEAIEHE 272

Query: 2840 VRIHRFFEKAKNKKKDTTTEDG-SDPHTS-----AKTQERLRKKVNTLIKQHHVRKVRQI 2679
             +I  F  K K KK      DG S+P T+      K QE+LRKKV  L+K+  V +VR+I
Sbjct: 273  AKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKVTQLLKKQKVHQVRKI 332

Query: 2678 VKDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTD 2499
            VK HD  K WGQE   KVG RLIQLL E AYIQPP +Q+ + PPD+RPAF+H+ +T+  D
Sbjct: 333  VKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPDIRPAFVHSLKTITKD 392

Query: 2498 TQKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRT 2319
              K  RRYG+IECD LVRKGLEKTARHMVIPYMPMLVPP  W GYD+GAY FLPSYVMRT
Sbjct: 393  GNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRT 452

Query: 2318 HGAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDRE 2139
            HGAKQQRE VKR P KQL+ +F ALDTLGNTKWR+NKRVL ++DR+W++GGR+A LVDRE
Sbjct: 453  HGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLGVVDRLWANGGRVASLVDRE 512

Query: 2138 DIPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPH 1959
            D+PLPE+PDTEDE                N+ERHS RCD ELKLAVARKM+DEDGFYYPH
Sbjct: 513  DVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVELKLAVARKMRDEDGFYYPH 572

Query: 1958 NLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSY 1779
            NLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLGKSGLRWLKIHLANLY GGVDKLSY
Sbjct: 573  NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSY 632

Query: 1778 DGRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHI 1599
            +GRIAF ENHLDDIFDSADRPLEG+RWWLSAEDPFQCL+ACIN++EALRS SPE  ISH+
Sbjct: 633  EGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDPFQCLAACINLSEALRSSSPETTISHM 692

Query: 1598 PVHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAV 1419
            PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIAARV+DIMR D++KDPA+
Sbjct: 693  PVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEKPADVYSGIAARVVDIMRRDAEKDPAI 752

Query: 1418 EPNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACAC 1239
             P+AL A+ LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAI DD E+F  +C
Sbjct: 753  NPHALHARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADDTEMFVASC 812

Query: 1238 YAAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLI 1059
            YAA+TTLTALGEMF+AARSIM+WLG+CAK+I+SEN PVRW TPLGLPVVQPYR+ GRHLI
Sbjct: 813  YAARTTLTALGEMFQAARSIMNWLGECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLI 872

Query: 1058 KTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYW 879
            KTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMT +ACKKAGLNFAGVHDSYW
Sbjct: 873  KTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYW 932

Query: 878  THACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESP 699
            THACDVDEMNRILREKFVELYE PILE+L+E+FQKSFP+L FPPLPERGDFDLREVLESP
Sbjct: 933  THACDVDEMNRILREKFVELYEAPILENLLESFQKSFPSLNFPPLPERGDFDLREVLESP 992

Query: 698  YFFN 687
            YFFN
Sbjct: 993  YFFN 996


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 1363 bits (3528), Expect = 0.0
 Identities = 663/899 (73%), Positives = 757/899 (84%), Gaps = 4/899 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD----DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKY 3204
            YA+ AEA++ T  E++    DE++EL++++   + R++   +    +  +   GM Q KY
Sbjct: 130  YASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQNRAR---GMGQGKY 186

Query: 3203 GILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQ 3024
             +LK+RQ+K+ETEAWE AAKEY+EL+ DMC+QKLAPNLPYMKSLFLGWFEPLRNAI  EQ
Sbjct: 187  HMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQ 246

Query: 3023 ESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEH 2844
            +  ++GK++ AYAPY   LPADMM+VITMHK+M LLM+G  HG+ +VV AAC IGEAIE 
Sbjct: 247  DLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQ 306

Query: 2843 EVRIHRFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHD 2664
            EVRIH+F E  + KK D   E+G +   + K +E+L KKV  L+K+  ++ VR IV  HD
Sbjct: 307  EVRIHKFLEMTRKKKVDKDQENG-ESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHD 365

Query: 2663 DMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNC 2484
              K W  E +AKVG+RLI+LLT+TA+IQPPA+Q+ + PPD+RPAF+HT +TV  D +   
Sbjct: 366  ASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNAS 425

Query: 2483 RRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQ 2304
            RRYG+IECDPLV KGLEKTARHMVIPYMPMLVPPL W GYDKG YFFLPSYVMR HGA+Q
Sbjct: 426  RRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQ 485

Query: 2303 QREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLP 2124
            QREA+KR P +QL+ VF ALD LGNT+WRVNKRVL+++DRIW+SGG +ADLVDR D+PLP
Sbjct: 486  QREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADLVDRNDVPLP 545

Query: 2123 EEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFR 1944
            EEPDTEDE                N ERHSQRCDTELKLAVARKM+DE+GFYYPHNLDFR
Sbjct: 546  EEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFR 605

Query: 1943 GRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIA 1764
            GRAYPMHP+LNHLGSD+CRGILEF EGRPLGKSGL WLKIHLANLY GGVDKLS +GRIA
Sbjct: 606  GRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVDKLSLEGRIA 665

Query: 1763 FAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQD 1584
            F ENHLDDIFDS D+PLEG+RWWL AEDPFQCL+ CIN+AEALRS SPE  ISHIPVHQD
Sbjct: 666  FTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETFISHIPVHQD 725

Query: 1583 GSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNAL 1404
            GSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVL+IMR D+QKDP V P AL
Sbjct: 726  GSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQKDPVVFPEAL 785

Query: 1403 RAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKT 1224
            RAK LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER +I DD E+F CACYAAK 
Sbjct: 786  RAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGSISDDAEIFGCACYAAKI 845

Query: 1223 TLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQ 1044
            TLTALGEMFEAAR IMSWLG+CAKIIASEN PVRWTTPLGLPVVQPYRKFGRHLIKTSLQ
Sbjct: 846  TLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKFGRHLIKTSLQ 905

Query: 1043 VLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACD 864
            VLTLQRET+KVM KRQRTAFPPNFVHSLD SHMMMT IACKKAGL+FAGVHDSYWTHACD
Sbjct: 906  VLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKKAGLSFAGVHDSYWTHACD 965

Query: 863  VDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            VDEMN+ILREKFV+LYE PILE+L+E+FQ+SFP L FPPLPERGDFDLR+VLESPYFFN
Sbjct: 966  VDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPERGDFDLRDVLESPYFFN 1024


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score = 1362 bits (3525), Expect = 0.0
 Identities = 664/910 (72%), Positives = 751/910 (82%), Gaps = 15/910 (1%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD----DEIRELVREIKDHDTRKSSIPRPRADHP--KKLVEGMTQR 3210
            YATAA  +  ++ E D    DE++E + EI  H  +  +  R +      KK + GM   
Sbjct: 88   YATAAAQVIASTDESDFSGCDELQEQIEEINKHHKKMDAHFRQQQQQQQRKKTIAGMGIG 147

Query: 3209 KYGILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAA 3030
            KY ILKKRQ+KMETEAWE AA+EYQELLTDMC+QKLAPNLPY+KSLFLGWFEPLR+AIA 
Sbjct: 148  KYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAK 207

Query: 3029 EQESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTG-HGSAKVVHAACQIGEA 2853
            EQE  +E  ++ ++ PY+  LPADMMAVITMHK+M LLM+  G +GS +VV AAC +GEA
Sbjct: 208  EQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEA 267

Query: 2852 IEHEVRIHRFFEKAKNKKKDTTTEDG--------SDPHTSAKTQERLRKKVNTLIKQHHV 2697
            IEHE RIHRF EK K KKK T  E+         SD    AK QE+LRKKV  L+K+  V
Sbjct: 268  IEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEKLAKEQEKLRKKVTELMKKQKV 327

Query: 2696 RKVRQIVKDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTT 2517
            ++VR + K HDD  PWGQE Q KVG RLIQLL ETAYIQPP NQ+ +  PD+RPAF+HT 
Sbjct: 328  QQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHTL 387

Query: 2516 QTVLTDTQKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLP 2337
            + V+ DTQK  RRYG+IECDP+VR GLEK+ARHMVIPYMPMLVPPL W GYD+GAY FLP
Sbjct: 388  KNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLFLP 447

Query: 2336 SYVMRTHGAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIA 2157
            SYVMRTHGAKQQR AVKR P KQL+ V+ AL+TLGNTKWR+NK++L ++DRIW++GGR+A
Sbjct: 448  SYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKILTVVDRIWANGGRLA 507

Query: 2156 DLVDREDIPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDED 1977
             L+DRED PLPEE +TEDE                NSERHSQRCD ELKLAVARKM+DED
Sbjct: 508  GLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCDIELKLAVARKMKDED 567

Query: 1976 GFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGG 1797
            GFYYPHNLDFRGRAYPMHPHLNHLGSD+CRGILEFAEGRPLGKSG RWLKIHLAN+Y GG
Sbjct: 568  GFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSGFRWLKIHLANVYAGG 627

Query: 1796 VDKLSYDGRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPE 1617
            VDKLSY+GR+AF ENHLD IFDSADRPLEG+RWWL AEDPFQCL+ C N+AEA RS SPE
Sbjct: 628  VDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLATCFNLAEAFRSSSPE 687

Query: 1616 ACISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDS 1437
              ISH+P+HQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIAARVLDIMR D+
Sbjct: 688  TTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSGEKPADVYSGIAARVLDIMRTDA 747

Query: 1436 QKDPAVEPNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNE 1257
            +KDP   PNAL AK LIN+VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A+ DD  
Sbjct: 748  EKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAVADDPS 807

Query: 1256 LFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRK 1077
            L+A +CYAAKTTL AL EMFE ARSIM+WLG+CAK+IASEN PV+WTTPLGLPVVQPYR+
Sbjct: 808  LYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIASENQPVQWTTPLGLPVVQPYRQ 867

Query: 1076 FGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAG 897
             GRHLIKTSLQ+L LQ+ETDK+M KRQRTAFPPNFVHSLDGSHMMMT +ACK AGLNFAG
Sbjct: 868  LGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKHAGLNFAG 927

Query: 896  VHDSYWTHACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLR 717
            VHDSYWTHACDVDEMNRILRE FVELYE PILE+L+E FQKSFP L+FPPLP+RGDFDLR
Sbjct: 928  VHDSYWTHACDVDEMNRILRENFVELYEAPILENLLEGFQKSFPKLKFPPLPDRGDFDLR 987

Query: 716  EVLESPYFFN 687
            +VLESPYFFN
Sbjct: 988  DVLESPYFFN 997


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1358 bits (3516), Expect = 0.0
 Identities = 655/812 (80%), Positives = 724/812 (89%), Gaps = 1/812 (0%)
 Frame = -1

Query: 3119 MCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQESFKEGKSRAAYAPYWGLLPADMMAVIT 2940
            MC+QKLAPNLPY+KSLFLGWFEPLR+ IAAEQ+  K+GK+RAAYAPY+  LPADMMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 2939 MHKMMALLMSGTGHGSAKVVHAACQIGEAIEHEVRIHRFFEKAKNKKKDTTTEDG-SDPH 2763
            MHK+M LLM+G G+GSA+VV AAC IGEAIEHEVRI RF EK K K   +   DG S+P 
Sbjct: 61   MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120

Query: 2762 TSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDDMKPWGQENQAKVGARLIQLLTETAYI 2583
            T  K QE+LRKKV+ L+K+  +++VRQIVK  DD KPWGQ+   KVG+RLI+LL ETAYI
Sbjct: 121  T--KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 178

Query: 2582 QPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCRRYGIIECDPLVRKGLEKTARHMVIPY 2403
            QPPA+Q+ + PPD+RPAF+HT +TV+ +TQK  RRYG+IECDPLVRKGLEKTARHMVIPY
Sbjct: 179  QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 238

Query: 2402 MPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQREAVKRAPGKQLDHVFAALDTLGNTK 2223
            MPMLVPPL W GYDKGAY FLPSYVMR HGA+QQREA+KRAP K L+  F AL+TLGNTK
Sbjct: 239  MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 298

Query: 2222 WRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPEEPDTEDEXXXXXXXXXXXXXXXXNSE 2043
            WR+NKRVL +IDRIW+SGGR+ADLVDRED+PLPEEPDTEDE                NSE
Sbjct: 299  WRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSE 358

Query: 2042 RHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEG 1863
            RHSQRCD ELKLAVARKM+DEDGF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEG
Sbjct: 359  RHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 418

Query: 1862 RPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAFAENHLDDIFDSADRPLEGKRWWLSAE 1683
            RPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR+AF ENHL+DIFDSADRPLEG+RWWLSAE
Sbjct: 419  RPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAE 478

Query: 1682 DPFQCLSACINIAEALRSPSPEACISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVVG 1503
            DPFQCL+ CIN++EALRS SPE  ISH+PVHQDGSCNGLQHYAALGRDKLGAAAVNLV G
Sbjct: 479  DPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 538

Query: 1502 DKPADVYSGIAARVLDIMRGDSQKDPAVEPNALRAKFLINQVDRKLVKQTVMTSVYGVTY 1323
            +KPADVYSGIAARVLDIM+ D+QKDPA EPNALRA+ LI+QVDRKLVKQTVMTSVYGVTY
Sbjct: 539  EKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTY 598

Query: 1322 IGARDQIKRRLKERCAIEDDNELFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIA 1143
            IGARDQIKRRLKERCAI D+ E+F+ +CYAAKTTLTALGEMFEAARSIMSWLGDCAK+IA
Sbjct: 599  IGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIA 658

Query: 1142 SENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHS 963
            SENHPVRW TPLGLPVVQPYRK GRHLIKTSLQVL+LQRETDKVM KRQRTAFPPNFVHS
Sbjct: 659  SENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHS 718

Query: 962  LDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYELPILEDLVEN 783
            LDGSHMMMT +AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY +PILE+L+E 
Sbjct: 719  LDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEG 778

Query: 782  FQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            FQKSFP L FPPLPERGDFDLREVLESPYFFN
Sbjct: 779  FQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
            [Chenopodium album]
          Length = 988

 Score = 1357 bits (3512), Expect = 0.0
 Identities = 663/896 (73%), Positives = 754/896 (84%), Gaps = 2/896 (0%)
 Frame = -1

Query: 3368 ATAAEAIAVTSSEDDDEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKYGILKK 3189
            A AAE I   SSE+DDEIRELV EI   +  K    R +   P  +V GMT  +Y +L+K
Sbjct: 99   AAAAEEIVTASSEEDDEIRELVDEINKLERVKPQSIRRK--EPINMVAGMTAGRYNVLRK 156

Query: 3188 RQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQESFKE 3009
            RQ+K+ETEAW  AA+EYQELL DMC+QKLAPNLPYMKSLFLGWFEPL++AI A QE+ K 
Sbjct: 157  RQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQEACKV 216

Query: 3008 GKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEHEVRIH 2829
            G++R  Y   +  LPADMMAVITMHK+M LLM+G+G+G   V+ AA QIGEA+E E +I 
Sbjct: 217  GRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNGGTTVIQAATQIGEAVEQEAKIR 276

Query: 2828 RFFEKAKNKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKDHDDMKPW 2649
            +F EK+K KK  T   D  D   SAK Q+RL KKV TL+K+  + +VR+IV+  DD KPW
Sbjct: 277  KFLEKSK-KKPATNNNDEDD---SAKAQQRLAKKVTTLMKKQKISQVREIVRGQDDSKPW 332

Query: 2648 GQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQKNCRR-YG 2472
             Q+NQ KVG +LIQLL ETAYIQPPA+Q+ + PPD+RPAFIHT +TV  ++QK  RR YG
Sbjct: 333  SQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPAFIHTQKTVCKESQKGLRRRYG 392

Query: 2471 IIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGAKQQREA 2292
            +IECDPLVR+GLEKTARHMVIPYMPML+PPL W GYDKGAY +LPSY+MRTHG KQQR+A
Sbjct: 393  VIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRTHGVKQQRDA 452

Query: 2291 VKR-APGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIPLPEEP 2115
            +KR A    L  VF ALDTLGNTKWRVNK+VL+IIDRIW+SGG +ADLVDRED+PLP EP
Sbjct: 453  IKRVARDNNLCTVFEALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDREDMPLPGEP 512

Query: 2114 DTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLDFRGRA 1935
            DT+D                 N+ERHSQRCDTELKLAVARKM+DE+GFYYPHNLDFRGRA
Sbjct: 513  DTDDAEEIKKWKWKVKHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRA 572

Query: 1934 YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGRIAFAE 1755
            YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGL WLK+H+ANLY GGVDKLSY+GR+AF E
Sbjct: 573  YPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLSYEGRVAFTE 632

Query: 1754 NHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVHQDGSC 1575
            N LDD+FDSADRPLEG+RWWL+AEDPFQCL+ACIN+ +ALRS SPE  +SHIP+HQDGSC
Sbjct: 633  NRLDDVFDSADRPLEGRRWWLTAEDPFQCLAACINLTDALRSSSPEDYLSHIPIHQDGSC 692

Query: 1574 NGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPNALRAK 1395
            NGLQHYAALGRDKLGA AVNLV G KPADVYSGIAARV +IMRGD++KDP++EPNA  AK
Sbjct: 693  NGLQHYAALGRDKLGAEAVNLVAGGKPADVYSGIAARVFEIMRGDAEKDPSIEPNAFHAK 752

Query: 1394 FLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAAKTTLT 1215
             L+NQVDRKLVKQTVMTSVYGVTYIG RDQIKRRLKER AI DDN+LFA +CYAAKTT+T
Sbjct: 753  LLLNQVDRKLVKQTVMTSVYGVTYIGVRDQIKRRLKERDAIVDDNDLFAASCYAAKTTMT 812

Query: 1214 ALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLT 1035
            AL EMFEAARSIM WLGDCAKIIASEN P RW+TPLGLPVVQPYR  GR L+KTSLQVLT
Sbjct: 813  ALEEMFEAARSIMGWLGDCAKIIASENQPARWSTPLGLPVVQPYRNHGRRLVKTSLQVLT 872

Query: 1034 LQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHACDVDE 855
            L+ +TDKVMAKRQRTAFPPNFVHSLDGSHMMMT IACKKAG+NFAGVHDSYWTHACDVD+
Sbjct: 873  LRCDTDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFAGVHDSYWTHACDVDK 932

Query: 854  MNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFFN 687
            MN+ILREKFVELYE PILE+L+E+FQ+SFP L+FPPLPERGDFDLREVLESPYFFN
Sbjct: 933  MNQILREKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLESPYFFN 988


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1354 bits (3505), Expect = 0.0
 Identities = 659/903 (72%), Positives = 764/903 (84%), Gaps = 8/903 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD------DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQR 3210
            YA+ AEA+AV+S++ +      DE+ EL+ E+K  + ++ +  R +    + L  GM  R
Sbjct: 124  YASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQ---RMLTSGMGHR 180

Query: 3209 KYGILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAA 3030
            KY  LK+RQVK+ETEAWE AAKEY+ELL DMC+QKLAPNLPY+KSLFLGWFEPLR+ IA 
Sbjct: 181  KYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAE 240

Query: 3029 EQESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAI 2850
            EQE   +GKS+AAYA Y+  LPADMMAVITMHK+M LLM+G  HG+A+VV AA  IG+AI
Sbjct: 241  EQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAI 300

Query: 2849 EHEVRIHRFFEKAKNKK--KDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIV 2676
            E EVRIH F EK K +K  KD   EDG   H + + QE+LRKKV  L+K+  +R V QIV
Sbjct: 301  EQEVRIHNFLEKTKKQKAEKDKQKEDGE--HVTQE-QEKLRKKVTNLMKKQKLRAVGQIV 357

Query: 2675 KDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDT 2496
            +  DD KPWGQ+ +AKVG+RLI LL +TAYIQPPANQ+  DPPD+RPAF+H+ +TV  +T
Sbjct: 358  RRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKET 417

Query: 2495 QKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTH 2316
            +   RRYGII+CD LV KGLE+TARHMVIPYMPMLVPP+KW GYDKG + +LPSYVMRTH
Sbjct: 418  KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 477

Query: 2315 GAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDRED 2136
            GA+QQREAVKRA   QL  VF ALDTLGNTKWR+NKRVL+++DRIW+ GGR+ADLVDR+D
Sbjct: 478  GARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537

Query: 2135 IPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHN 1956
             PLPEEPDTEDE                N ERHSQRCD ELKLAVARKM+DE+ F+YPHN
Sbjct: 538  APLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHN 597

Query: 1955 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYD 1776
            +DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG+SGLRWLKIHLANL+ GGV+KLS +
Sbjct: 598  VDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLE 657

Query: 1775 GRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIP 1596
            GRI F ENH+DDIFDS+D+PLEG+RWWL+AEDPFQCL+ CIN++EA+RS SPE  +SHIP
Sbjct: 658  GRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIP 717

Query: 1595 VHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVE 1416
            VHQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIAARVLDIM+ D+Q+DPA  
Sbjct: 718  VHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEF 777

Query: 1415 PNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACY 1236
            P+A+RA+ L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AI DD+ELF  ACY
Sbjct: 778  PDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACY 837

Query: 1235 AAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIK 1056
            AAK TLTALGEMFEAARSIM+WLG+CAKIIASEN PVRWTTPLGLPVVQPYRK GRHLIK
Sbjct: 838  AAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIK 897

Query: 1055 TSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWT 876
            TSLQ+LTLQRET+KVM KRQRTAFPPNF+HSLDGSHMMMT +AC++AGLNFAGVHDSYWT
Sbjct: 898  TSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWT 957

Query: 875  HACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPY 696
            HACDVD++NRILREKFVELYE PILE L+E+FQ S+P L FPPLPERGDFD+R+VLESPY
Sbjct: 958  HACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPY 1017

Query: 695  FFN 687
            FFN
Sbjct: 1018 FFN 1020


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 1352 bits (3500), Expect = 0.0
 Identities = 661/903 (73%), Positives = 766/903 (84%), Gaps = 8/903 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD------DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQR 3210
            YA+ AEA+AV+S++ +      DE++EL+ E+K  + ++ +  R +    + L  GM  R
Sbjct: 125  YASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFAFRRRKQ---RMLTSGMGHR 181

Query: 3209 KYGILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAA 3030
            KY  LK+RQVK+ETEAWE AAKEY+ELL DMC+QKLAPNLPY+KSLFLGWFEPLR+ IA 
Sbjct: 182  KYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAE 241

Query: 3029 EQESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAI 2850
            EQE   +GKS+AAYA Y   LPADMMAVITMHK+M LLM+G  HG+A+VV AA  IG+AI
Sbjct: 242  EQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAI 301

Query: 2849 EHEVRIHRFFEKAKNKK--KDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIV 2676
            E EVRIH F EK K +K  KD   EDG   H + + QE+LRKKV  L+K+  +R V QIV
Sbjct: 302  EQEVRIHNFLEKTKKQKAEKDKQKEDGE--HVTQE-QEKLRKKVTNLMKKQKLRAVGQIV 358

Query: 2675 KDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDT 2496
            +  DD KPWGQ+ +AKVG+RLI+LL +TAYIQPPANQ+  DPPD+RPAF+H+ +TV  +T
Sbjct: 359  RRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET 418

Query: 2495 QKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTH 2316
            +   RRYGII+CD LV KGLE+TARHMVIPYMPMLVPP+KW GYDKG + +LPSYVMRTH
Sbjct: 419  KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 478

Query: 2315 GAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDRED 2136
            GA+QQREAVKRA   QL  VF ALDTLG+TKWR+NKRVL++IDRIW+ GGR+ADLVDR+D
Sbjct: 479  GARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDD 538

Query: 2135 IPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHN 1956
             PLPEEPDTEDE                N ERHSQRCD ELKLAVARKM+DE+GF+YPHN
Sbjct: 539  APLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHN 598

Query: 1955 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYD 1776
            +DFRGRAYPMHPHLNHLGSD+CRG+L FAEGRPLG+SGLRWLKIHLANL+ GGV+KLS +
Sbjct: 599  VDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLE 658

Query: 1775 GRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIP 1596
            GRIAF ENH+DDIFDSAD+PLEG+RWWL+AEDPFQCL+ CIN++EA+RS SPE  ISHIP
Sbjct: 659  GRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIP 718

Query: 1595 VHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVE 1416
            VHQDGSCNGLQHYAALGRD+LGAAAVNLV G+KPADVYSGIAARVLDIM+ D+Q+DPA  
Sbjct: 719  VHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEF 778

Query: 1415 PNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACY 1236
            P+A+RA+ L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AI DD+ELF  ACY
Sbjct: 779  PDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACY 838

Query: 1235 AAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIK 1056
            AAK TLTALGEMFEAARSIM+WLG+CAKIIASEN PVRWTTPLGLPVVQPYRK GRHLIK
Sbjct: 839  AAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIK 898

Query: 1055 TSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWT 876
            TSLQ+LTLQ+ET+KVM KRQRTAFPPNF+HSLDGSHMMMT +AC++AGLNFAGVHDSYWT
Sbjct: 899  TSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWT 958

Query: 875  HACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPY 696
            HACDVD++NRILREKFVELYE PILE L+E+FQ S+P L FPPLPERGDFDLR+VLESPY
Sbjct: 959  HACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPY 1018

Query: 695  FFN 687
            FFN
Sbjct: 1019 FFN 1021


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 656/903 (72%), Positives = 762/903 (84%), Gaps = 8/903 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD------DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQR 3210
            YA+ AEA+AV+S++ +      DE+ EL+ E+K  + ++ +  R +    + L  GM  R
Sbjct: 124  YASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFAFRRRKQ---RMLTSGMGHR 180

Query: 3209 KYGILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAA 3030
            KY  LK+RQVK+ETEAWE AAKEY+ELL DMC+QKLAPNLPY+KSLFLGWFEPLR+ IA 
Sbjct: 181  KYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAE 240

Query: 3029 EQESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAI 2850
            EQE   +GKS+AAYA Y+  LPADMMAVITMHK+M LLM+G  HG+A+VV AA  IG+AI
Sbjct: 241  EQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAI 300

Query: 2849 EHEVRIHRFFEKAKNKK--KDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIV 2676
            E EVRIH F EK K +K  KD   EDG   H + + QE+LRKKV  L+K+  +R V QIV
Sbjct: 301  EQEVRIHNFLEKTKKQKAEKDKQKEDGE--HVTQE-QEKLRKKVTNLMKKQKLRAVGQIV 357

Query: 2675 KDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDT 2496
            +  DD KPWGQ+ +AKVG+RLI LL +TAYIQPPANQ+  DPPD+ PAF+H+ +TV  +T
Sbjct: 358  RRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKET 417

Query: 2495 QKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTH 2316
            +   RRYGII+CD LV KGLE+TARHMVIPYMPMLVPP+KW GYDKG + +LPSYVMRTH
Sbjct: 418  KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTH 477

Query: 2315 GAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDRED 2136
            GA+QQREAVKRA   QL  VF ALDTLGNTKWR+NKRVL+++DRIW+ GGR+ADLVDR+D
Sbjct: 478  GARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537

Query: 2135 IPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHN 1956
             PLPEEPDTEDE                N ERHSQRCD ELKLAVARKM+DE+ F+YPHN
Sbjct: 538  APLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHN 597

Query: 1955 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYD 1776
            +DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG+SGLRWLKIHLANL+ GGV+KLS +
Sbjct: 598  VDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLE 657

Query: 1775 GRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIP 1596
            GRI F ENH+DDIFDS+D+PLEG+RWWL+AEDPFQCL+ CIN++EA+RS SPE  +SHIP
Sbjct: 658  GRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIP 717

Query: 1595 VHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVE 1416
            VHQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPA+ YSGIAARVLDIM+ D+Q+DPA  
Sbjct: 718  VHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKRDAQRDPAEF 777

Query: 1415 PNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACY 1236
            P+A+RA+ L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER AI DD+ELF  ACY
Sbjct: 778  PDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACY 837

Query: 1235 AAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIK 1056
            AAK TLTALGEMFEAARSIM+WLG+CAKIIASEN PVRWTTPLGLPVVQPYRK GRHLIK
Sbjct: 838  AAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIK 897

Query: 1055 TSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWT 876
            TSLQ+LTLQRET+KVM KRQRTAFPPNF+HSLDGSHMMMT +AC++AGLNFAGVHDSYWT
Sbjct: 898  TSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWT 957

Query: 875  HACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPY 696
            HACDVD++NRILREKFVELYE PILE L+E+FQ S+P L FPPLPERGDFD+R+VLESPY
Sbjct: 958  HACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPY 1017

Query: 695  FFN 687
            FFN
Sbjct: 1018 FFN 1020


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score = 1347 bits (3486), Expect = 0.0
 Identities = 659/901 (73%), Positives = 758/901 (84%), Gaps = 6/901 (0%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDD----DEIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRKY 3204
            YAT AEA++ T  E+D    +EI+EL++E+K  + R+      R  + +++  GM   KY
Sbjct: 132  YATVAEAVSSTDVEEDVSIVEEIQELLQEMKKEEQREGENGGGR--NRRRVARGMGSGKY 189

Query: 3203 GILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAEQ 3024
             +LK RQVK+ETEAWE AA EY+ELL DMC+QKLAPNLPYMKSLFLGWFEPLR+AIA EQ
Sbjct: 190  RMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQ 249

Query: 3023 ESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTGHGSAKVVHAACQIGEAIEH 2844
            E  +  K + AYAPY+  LPADMMAVITMHK+M LLM+G  HG A+VV AAC IG+AIE 
Sbjct: 250  ERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQ 309

Query: 2843 EVRIHRFFEKAK--NKKKDTTTEDGSDPHTSAKTQERLRKKVNTLIKQHHVRKVRQIVKD 2670
            EVRIH+F EK K  N+ K+   E+G + +T    QE+LRKKV  LIK+  +  VR+IVK 
Sbjct: 310  EVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKG 369

Query: 2669 HDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHTTQTVLTDTQK 2490
             DD KPWGQ+ +AKVG+R+I+LLT+TAYIQ PA+Q+V+ PPD+ PAF HT +TV  +T+ 
Sbjct: 370  QDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKG 429

Query: 2489 NCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFLPSYVMRTHGA 2310
              ++YG+IEC+PLV KGLE+TARHMVIPYMPMLVPP+KW GYDKGA+FFLPSYVMRTHGA
Sbjct: 430  GSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGA 489

Query: 2309 KQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRIADLVDREDIP 2130
            KQQR+ VKR P KQL+ VF ALDTLGNTKWRVN RVL+++DRIWS GGR+ADLVDR D+P
Sbjct: 490  KQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVP 549

Query: 2129 LPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDEDGFYYPHNLD 1950
            LPE+P+TEDE                N ERHSQRCD ELKL+VARKM+DE+GFYYPHN+D
Sbjct: 550  LPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVD 609

Query: 1949 FRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVDKLSYDGR 1770
            FRGRAYPMHP+LNHLGSDLCRGILEFAEGR LGKSGL WLKIHLANLY GGVDKLS++GR
Sbjct: 610  FRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGGVDKLSHEGR 669

Query: 1769 IAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSPEACISHIPVH 1590
            +AF ENHLDDIFDSAD+PLEG+RWWL AEDPFQCL+ CIN+ EALRS SPE  ISHIPVH
Sbjct: 670  LAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVH 729

Query: 1589 QDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGDSQKDPAVEPN 1410
            QDGSCNGLQHYAALGRD LGAAAVNLV  +KPADVYSGIAARVL I+R D+Q+DPAV P+
Sbjct: 730  QDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIRRDAQRDPAVFPD 789

Query: 1409 ALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDNELFACACYAA 1230
            ALRAK L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER A  ++ ELF  +CYAA
Sbjct: 790  ALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAA 849

Query: 1229 KTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYRKFGRHLIKTS 1050
            K TLTALGEMF+AAR IMSWLG+CAKIIASEN PVRWTTPLGLPVVQPYRK GRH +KTS
Sbjct: 850  KVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTS 909

Query: 1049 LQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFAGVHDSYWTHA 870
            LQ+LTLQRET+KVM KRQRTAFPPNFVHSLDGSHMMMT +AC+KAGL FAGVHDSYWTHA
Sbjct: 910  LQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHA 969

Query: 869  CDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDLREVLESPYFF 690
            CDVDEMNRILREKFVELYE+PILE+L+++FQKSFP L  PPLPERGDFDLREVL SPYFF
Sbjct: 970  CDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVLPPLPERGDFDLREVLGSPYFF 1029

Query: 689  N 687
            N
Sbjct: 1030 N 1030


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score = 1347 bits (3485), Expect = 0.0
 Identities = 663/911 (72%), Positives = 755/911 (82%), Gaps = 16/911 (1%)
 Frame = -1

Query: 3371 YATAAEAIAVTSSEDDD-----EIRELVREIKDHDTRKSSIPRPRADHPKKLVEGMTQRK 3207
            YATAA A  + S+++ D     + + L+ ++  H  +     RP+    KK+V GM   K
Sbjct: 85   YATAAAADVIPSNDESDLSGSDDFQGLMEQVNKHFQKMEPQFRPQE---KKMVAGMGIGK 141

Query: 3206 YGILKKRQVKMETEAWELAAKEYQELLTDMCQQKLAPNLPYMKSLFLGWFEPLRNAIAAE 3027
            Y ILK+RQ+KMETEAWE AA+EYQE+L DMC+QKLAPNLPY+KSLFLGWFEPLR+AI AE
Sbjct: 142  YAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAE 201

Query: 3026 QESFKEGKSRAAYAPYWGLLPADMMAVITMHKMMALLMSGTG-HGSAKVVHAACQIGEAI 2850
            QE  K    R ++  ++  LPADMMAVITMHK+M LLM+G G   S +VV AA  +GEAI
Sbjct: 202  QELCKRNL-RVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEAI 260

Query: 2849 EHEVRIHRFFEKAKNKKK----------DTTTEDGSDPHTSAKTQERLRKKVNTLIKQHH 2700
            EHE RIH+F EK K +K           D   E+G      +K QE+LRKKV TLIK+  
Sbjct: 261  EHEGRIHKFLEKTKKRKNVEAKISEGESDAAIEEGEK---LSKEQEKLRKKVTTLIKKQK 317

Query: 2699 VRKVRQIVKDHDDMKPWGQENQAKVGARLIQLLTETAYIQPPANQIVEDPPDVRPAFIHT 2520
            V++VR+IVK HDD +PWGQE   KVG+RLIQL+ ETAYIQPP +QI + PPD+RPAF+HT
Sbjct: 318  VQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHT 377

Query: 2519 TQTVLTDTQKNCRRYGIIECDPLVRKGLEKTARHMVIPYMPMLVPPLKWIGYDKGAYFFL 2340
             +T+  DTQK+ RRYG+IECDPLVRKGLEK+ARHMVIPYMPMLVPPL W GYD+GA+ FL
Sbjct: 378  LKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLFL 437

Query: 2339 PSYVMRTHGAKQQREAVKRAPGKQLDHVFAALDTLGNTKWRVNKRVLNIIDRIWSSGGRI 2160
            PSYVMR HG+KQQR+AVKRA   QL+ VF ALDTLGNTKWR+NKRVL ++DRIW+SGG +
Sbjct: 438  PSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGHL 497

Query: 2159 ADLVDREDIPLPEEPDTEDEXXXXXXXXXXXXXXXXNSERHSQRCDTELKLAVARKMQDE 1980
            A LVDRED PLPEEP TEDE                NSERHSQRCD ELKLAVARKM+DE
Sbjct: 498  AGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKDE 557

Query: 1979 DGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGG 1800
            +GFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEFAEGRPLGKSGLRWLKIHLANLY G
Sbjct: 558  EGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAG 617

Query: 1799 GVDKLSYDGRIAFAENHLDDIFDSADRPLEGKRWWLSAEDPFQCLSACINIAEALRSPSP 1620
            GVDKLSYDGRI+F ENHLDDIFDSAD+PLEG+RWWL AEDPFQCL+ACIN++EALRSPSP
Sbjct: 618  GVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPSP 677

Query: 1619 EACISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVVGDKPADVYSGIAARVLDIMRGD 1440
            E   SH PVHQDGSCNGLQHYAALGRDKLGAAAVNLV G+KPADVYSGIA RVLDIM+ D
Sbjct: 678  ETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIATRVLDIMQRD 737

Query: 1439 SQKDPAVEPNALRAKFLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDN 1260
            ++KDPA+ PN++ AK L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERC I DD 
Sbjct: 738  AEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIADDP 797

Query: 1259 ELFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIASENHPVRWTTPLGLPVVQPYR 1080
            +L++ ACYAAKTTL AL EMFE AR IM+WLG+CAK+IASEN PVRWTTPLGLPVVQPYR
Sbjct: 798  QLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIASENQPVRWTTPLGLPVVQPYR 857

Query: 1079 KFGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTTIACKKAGLNFA 900
            + GRHLIKTSLQVLTL+RETDKVM KRQRTAFPPNFVHSLDGSHMMMT +ACK+AGLNFA
Sbjct: 858  QLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFA 917

Query: 899  GVHDSYWTHACDVDEMNRILREKFVELYELPILEDLVENFQKSFPNLEFPPLPERGDFDL 720
            GVHDSYWTHACDVDEMNRILREKFVELYE PILE+L+E+FQ SFPNL+FPPLPERG FDL
Sbjct: 918  GVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQSSFPNLKFPPLPERGVFDL 977

Query: 719  REVLESPYFFN 687
            ++VL S YFFN
Sbjct: 978  KDVLRSTYFFN 988