BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00016122
         (1302 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   157   3e-95
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   157   3e-95
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   157   4e-95
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                155   6e-95
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               155   6e-95
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     155   1e-94
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        155   1e-94
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   154   1e-94
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   159   2e-94
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   152   2e-93
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   152   2e-93
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           154   4e-93
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   157   9e-93
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   147   2e-92
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   149   2e-92
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   144   1e-91
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   153   2e-91
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     153   2e-91
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   145   8e-91
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   144   2e-90

>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  157 bits (397), Expect(3) = 3e-95
 Identities = 67/114 (58%), Positives = 90/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE QT +K+K LRTDNG EFC   FN++C+++GI RHH+IP
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ + RCMLSH+++  +FWAEA STA Y+INRSP   LN
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633



 Score =  137 bits (346), Expect(3) = 3e-95
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
 Frame = -2

Query: 1271 DEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIRTL 1095
            DEWILD+ C+FH+C  ++WF S++ +  G VV MG++  C ++G G+V ++T DG+ RTL
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 1094 TGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS-- 924
              VRYIPG+ R LISL TL++ GY+YS   GVLKV KG+LV L  +     LY L G   
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTL 407

Query: 923  TXXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                T LWH RLGHM   GM
Sbjct: 408  TGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGM 440



 Score =  103 bits (258), Expect(3) = 3e-95
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT+S  +F EHCI+GK ++V F++++HTTK TLDY+H+DLWGP + PSLGG RYMLT
Sbjct: 449 LKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLT 508

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 509 IIDDYSRKV 517


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  157 bits (397), Expect(3) = 3e-95
 Identities = 67/114 (58%), Positives = 90/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE QT +K+K LRTDNG EFC   FN++C+++GI RHH+IP
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ + RCMLSH+++  +FWAEA STA Y+INRSP   LN
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633



 Score =  137 bits (346), Expect(3) = 3e-95
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
 Frame = -2

Query: 1271 DEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIRTL 1095
            DEWILD+ C+FH+C  ++WF S++ +  G VV MG++  C ++G G+V ++T DG+ RTL
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 1094 TGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS-- 924
              VRYIPG+ R LISL TL++ GY+YS   GVLKV KG+LV L  +     LY L G   
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 923  TXXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                T LWH RLGHM   GM
Sbjct: 408  TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 440



 Score =  103 bits (258), Expect(3) = 3e-95
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT+S  +F EHCI+GK ++V F++++HTTK TLDY+H+DLWGP + PSLGG RYMLT
Sbjct: 449 LKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLT 508

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 509 IIDDYSRKV 517


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  157 bits (397), Expect(3) = 4e-95
 Identities = 67/114 (58%), Positives = 90/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE QT +K+K LRTDNG EFC   FN++C+++GI RHH+IP
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ + RCMLSH+++  +FWAEA STA Y+INRSP   LN
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 633



 Score =  137 bits (346), Expect(3) = 4e-95
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
 Frame = -2

Query: 1271 DEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIRTL 1095
            DEWILD+ C+FH+C  ++WF S++ +  G VV MG++  C ++G G+V ++T DG+ RTL
Sbjct: 288  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 347

Query: 1094 TGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS-- 924
              VRYIPG+ R LISL TL++ GY+YS   GVLKV KG+LV L  +     LY L G   
Sbjct: 348  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 407

Query: 923  TXXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                T LWH RLGHM   GM
Sbjct: 408  TGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 440



 Score =  103 bits (257), Expect(3) = 4e-95
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT+S  +F EHCI+GK ++V F++++HTTK TLDY+H+DLWGP + PSLGG RYMLT
Sbjct: 449 LKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLT 508

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 509 VIDDYSRKV 517


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  155 bits (393), Expect(3) = 6e-95
 Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT CT+HMCP++DWF ++E +  G V MG++T C V G GTV ++  DG IR
Sbjct: 280  QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 339

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L+G+
Sbjct: 340  TLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGT 399

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 400  TILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 433



 Score =  154 bits (388), Expect(3) = 6e-95
 Identities = 65/109 (59%), Positives = 88/109 (80%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F+ F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH+++P
Sbjct: 513 YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVP 572

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSP 266
             PQQNGVA+R+NRTI+ K RCMLS++ L  QFWAEA STA Y+INRSP
Sbjct: 573 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 621



 Score = 88.2 bits (217), Expect(3) = 6e-95
 Identities = 36/60 (60%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T+++DYSRKV
Sbjct: 451 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKV 510


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  155 bits (393), Expect(3) = 6e-95
 Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT CT+HMCP++DWF ++E +  G V MG++T C V G GTV ++  DG IR
Sbjct: 112  QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 171

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L+G+
Sbjct: 172  TLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGT 231

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 232  TILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 265



 Score =  154 bits (388), Expect(3) = 6e-95
 Identities = 65/109 (59%), Positives = 88/109 (80%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F+ F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH+++P
Sbjct: 345 YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVP 404

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSP 266
             PQQNGVA+R+NRTI+ K RCMLS++ L  QFWAEA STA Y+INRSP
Sbjct: 405 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 453



 Score = 88.2 bits (217), Expect(3) = 6e-95
 Identities = 36/60 (60%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T+++DYSRKV
Sbjct: 283 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKV 342


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  155 bits (391), Expect(3) = 1e-94
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT CT+HMCP++DWF ++E++  G V MG++T C V G GTV ++  DG IR
Sbjct: 204  QTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 263

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 264  TLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGT 323

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 324  TILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 357



 Score =  152 bits (383), Expect(3) = 1e-94
 Identities = 64/114 (56%), Positives = 89/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F  F++WKT++E QT +K+K LRTDNG+E C + F  +CK +GI RH+++P
Sbjct: 437 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVP 496

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++ L  QFWAEA STA Y+INRSP  +++
Sbjct: 497 HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAID 550



 Score = 90.1 bits (222), Expect(3) = 1e-94
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T++DDYSRKV
Sbjct: 375 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 434


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  155 bits (393), Expect(3) = 1e-94
 Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT CT+HMCP++DWF ++E +  G V MG++T C V G GTV ++  DG IR
Sbjct: 295  QTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L+G+
Sbjct: 355  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGT 414

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 415  TILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 448



 Score =  151 bits (381), Expect(3) = 1e-94
 Identities = 64/109 (58%), Positives = 87/109 (79%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F+ F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH+++P
Sbjct: 528 YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 587

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSP 266
             PQQNGVA+R+NR I+ K RCMLS++ L  QFWAEA STA Y+INRSP
Sbjct: 588 HTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSP 636



 Score = 90.1 bits (222), Expect(3) = 1e-94
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T++DDYSRKV
Sbjct: 466 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 525


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  154 bits (390), Expect(3) = 1e-94
 Identities = 75/154 (48%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT CT+HMCP++DWF ++E++  G V MG++T C V G GTV ++  DG IR
Sbjct: 261  QTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 320

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LIS  TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 321  TLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 380

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 381  TILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 414



 Score =  154 bits (388), Expect(3) = 1e-94
 Identities = 66/114 (57%), Positives = 90/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F  F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH++IP
Sbjct: 494 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIP 553

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++ L  QFWAEA STA Y+INRSP  +++
Sbjct: 554 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAID 607



 Score = 88.6 bits (218), Expect(3) = 1e-94
 Identities = 36/60 (60%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RY++T++DDYSRKV
Sbjct: 432 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKV 491


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  159 bits (401), Expect(3) = 2e-94
 Identities = 76/153 (49%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ DEW+LDTGCT+HMCP++DWF ++E +  G V MG+NT C+V G GT+ ++  DG IR
Sbjct: 237  QTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIR 296

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GYRYS   G+LKV KG+LV++ A+ +  +LY L+G+
Sbjct: 297  TLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGT 356

Query: 923  TXXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T               ++ LWH RLGHM E G+
Sbjct: 357  T--IVGNVAAVTDSLSNSDLWHMRLGHMSEIGL 387



 Score =  147 bits (371), Expect(3) = 2e-94
 Identities = 63/114 (55%), Positives = 87/114 (76%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK E F  F++WKT++E QT +K+K LRTDNG+EFC R F  +C+ +GI RH+++ 
Sbjct: 467 YFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVS 526

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGV +R+NRTI+ K RCMLS++ L  +FWAEA STA Y+INRSP  +++
Sbjct: 527 HTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAID 580



 Score = 89.7 bits (221), Expect(3) = 2e-94
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T++DDYSRKV
Sbjct: 405 KFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKV 464


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  152 bits (384), Expect(3) = 2e-93
 Identities = 64/114 (56%), Positives = 90/114 (78%)
 Frame = -3

Query: 592  FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
            +FL HK++ F  F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH+++P
Sbjct: 735  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 794

Query: 412  GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
              PQQNGVA+R+NRTI+ K RC+LS++ L  QFWAEA STA Y+INRSP  +++
Sbjct: 795  HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAID 848



 Score =  150 bits (379), Expect(3) = 2e-93
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WIL+T C +HMCP++DWF ++E++  G V MG++T C V G GTV ++  DG IR
Sbjct: 502  QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 561

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 562  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 621

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 622  TILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGL 655



 Score = 90.1 bits (222), Expect(3) = 2e-93
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T++DDYSRKV
Sbjct: 673 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 732


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  152 bits (384), Expect(3) = 2e-93
 Identities = 64/114 (56%), Positives = 90/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F  F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI RH+++P
Sbjct: 528 YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 587

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RC+LS++ L  QFWAEA STA Y+INRSP  +++
Sbjct: 588 HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAID 641



 Score =  150 bits (379), Expect(3) = 2e-93
 Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WIL+T C +HMCP++DWF ++E++  G V MG++T C V G GTV ++  DG IR
Sbjct: 295  QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 354

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 355  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 414

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 415  TILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGL 448



 Score = 90.1 bits (222), Expect(3) = 2e-93
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP R  S GG RYM+T++DDYSRKV
Sbjct: 466 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKV 525


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  154 bits (389), Expect(3) = 4e-93
 Identities = 66/114 (57%), Positives = 89/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE QT +K+K L TDNG EFC   FN++C+++GI RHH+IP
Sbjct: 522 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIP 581

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ + RCMLSH+++  +FWAEA STA Y+INRSP   LN
Sbjct: 582 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLN 635



 Score =  137 bits (346), Expect(3) = 4e-93
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
 Frame = -2

Query: 1271 DEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIRTL 1095
            DEWILD+ C+FH+C  ++WF S++ +  G VV MG++  C ++G G+V ++T DG+ RTL
Sbjct: 290  DEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTL 349

Query: 1094 TGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGST- 921
              VRYIPG+ R LISL TL++ GY+YS   GVLKV KG+LV L  +     LY L G T 
Sbjct: 350  KNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTL 409

Query: 920  -XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
                             T LWH RLGHM   GM
Sbjct: 410  PGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGM 442



 Score = 99.8 bits (247), Expect(3) = 4e-93
 Identities = 44/69 (63%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + G T+S  +F EHCI+GK ++V F++++HTTK TLDY+H+DLWGP + PSLGG RYMLT
Sbjct: 451 LKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLT 510

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 511 IIDDYSRKV 519


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  157 bits (398), Expect(3) = 9e-93
 Identities = 69/121 (57%), Positives = 94/121 (77%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           + + HK E F  F++WK L+ENQT +KIKRLRTDNGLEFC  +F++FCK++GI+RH ++ 
Sbjct: 506 YMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVR 565

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLNG*LQCQ 233
             PQQNGVA+R+N+T+LE+ RCMLS++ L  +FWAEA STA Y+INR PH      +QC+
Sbjct: 566 NTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTG----IQCK 621

Query: 232 T 230
           T
Sbjct: 622 T 622



 Score =  148 bits (374), Expect(3) = 9e-93
 Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
 Frame = -2

Query: 1301 LAVDLADKSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLR 1122
            L  D      D W+LD+G ++H+CP ++WF ++E +D G + M N++ C+V+G G++ +R
Sbjct: 267  LVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIR 326

Query: 1121 THDGVIRTLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*ANRRGNL 942
            THDG   TL  VR++P + + LISL  L+S G+ +S + GVL+V KG+ +IL    RG L
Sbjct: 327  THDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTL 386

Query: 941  YALEGST-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGMDILAGED 804
            Y L+GST                 T LWH RLGHMGE+GM IL+ ED
Sbjct: 387  YFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKED 433



 Score = 84.3 bits (207), Expect(3) = 9e-93
 Identities = 38/60 (63%), Positives = 45/60 (75%)
 Frame = -1

Query: 783 SHEFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSR 604
           S EF EHC++GK  +  F  AIH TK TLDYIHSD WGP RV SLGG R+ +++IDDYSR
Sbjct: 442 SLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSR 501


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  147 bits (371), Expect(3) = 2e-92
 Identities = 63/114 (55%), Positives = 89/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE QT +++K LRTDN  EFC   F+++C+++GI RHH+IP
Sbjct: 521 YFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++++  +FWAEA +TA Y+INRSP   LN
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLN 634



 Score =  147 bits (370), Expect(3) = 2e-92
 Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1277 SKDEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            S DEWILDT C+FH+  ++DWF S++S+ +G VV MGN+    ++G G+V ++THDG+ R
Sbjct: 288  SHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITR 347

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IPG+ R LISL TL++ GY+YS  GGV+KV KG+LV +  +    NLY L GS
Sbjct: 348  TLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 407

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                 T LWH RLGHM E GM
Sbjct: 408  TLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGM 441



 Score = 95.5 bits (236), Expect(3) = 2e-92
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT  + +F E C++GK ++V F++++H TK  LDY+H+DLWGP R PSLGG RYMLT
Sbjct: 450 LDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLT 509

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 510 IIDDYSRKV 518


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  149 bits (375), Expect(3) = 2e-92
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1277 SKDEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            S DEWILDT C+FH+C ++DWF S++S+ +G VV MG++    ++G G+V ++THDG+ R
Sbjct: 288  SHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTR 347

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IPG+ R LISL TL++ GY+YS+ GGV+KV KG+LV +  +    NLY L GS
Sbjct: 348  TLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 407

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                 T LWH RLGHM E GM
Sbjct: 408  TLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGM 441



 Score =  148 bits (373), Expect(3) = 2e-92
 Identities = 64/114 (56%), Positives = 89/114 (78%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK  IE QT +++K LRTDNG EFC   F+++C+++GI RHH+IP
Sbjct: 521 YFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++++  +FWAEA +TA Y+INRSP   LN
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLN 634



 Score = 92.4 bits (228), Expect(3) = 2e-92
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT    +F EHC++GK ++V F++++H TK  LDY+H+DLWGP R   LGG RYMLT
Sbjct: 450 LDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLT 509

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 510 IIDDYSRKV 518


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  144 bits (364), Expect(3) = 1e-91
 Identities = 62/114 (54%), Positives = 88/114 (77%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +I+ QT +++K LRTDNG  FC   F+++C+++GI  HH+IP
Sbjct: 416 YFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIP 475

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++++  +FWAEA  TA Y+INRSP  SLN
Sbjct: 476 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLN 529



 Score =  144 bits (362), Expect(3) = 1e-91
 Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1277 SKDEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            S DEWILDT C+FH+C ++DWF S++S+ +G VV MG++    ++G G+V ++THDG+ R
Sbjct: 183  SHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTR 242

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IP + R LISL TL++ GY+YS  GGV+KV KG+LV +  +    NLY L GS
Sbjct: 243  TLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 302

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                 T +WH RLGHM E GM
Sbjct: 303  TLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGM 336



 Score = 98.6 bits (244), Expect(3) = 1e-91
 Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT  + +F EHC++GK ++V F++++H TK  LDY+H+DLWGP R PSLGG RYMLT
Sbjct: 345 LDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLT 404

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 405 IIDDYSRKV 413


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  153 bits (386), Expect(3) = 2e-91
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT  T+HMCP++DWF ++E+L  G V MG++T C V G GTV ++  DG IR
Sbjct: 330  QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 390  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 449

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 450  TILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 483



 Score =  145 bits (367), Expect(3) = 2e-91
 Identities = 61/109 (55%), Positives = 83/109 (76%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F  F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI  H+++P
Sbjct: 563 YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVP 622

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSP 266
             PQQNGVA+R+N  I+ K RCMLS++ L  QFWAEA ST  Y+INRSP
Sbjct: 623 HTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSP 671



 Score = 87.0 bits (214), Expect(3) = 2e-91
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP    S GG RYM+T++DDYSRKV
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  153 bits (386), Expect(3) = 2e-91
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = -2

Query: 1280 KSKDEWILDTGCTFHMCPDKDWFGSFESLDSGVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            ++ D+WILDT  T+HMCP++DWF ++E+L  G V MG++T C V G GTV ++  DG IR
Sbjct: 330  QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL+ VR+IP LKR LISL TL+  GY+YS   G+LKV KG+LV++ A+ +  NLY L G+
Sbjct: 390  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 449

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                +T LWH RLGHM E G+
Sbjct: 450  TILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 483



 Score =  145 bits (367), Expect(3) = 2e-91
 Identities = 61/109 (55%), Positives = 83/109 (76%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK++ F  F++WKT++E QT +K+K LRTDNG+EFC + F  +CK +GI  H+++P
Sbjct: 563 YFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVP 622

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSP 266
             PQQNGVA+R+N  I+ K RCMLS++ L  QFWAEA ST  Y+INRSP
Sbjct: 623 HTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSP 671



 Score = 87.0 bits (214), Expect(3) = 2e-91
 Identities = 36/60 (60%), Positives = 48/60 (80%)
 Frame = -1

Query: 777 EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLTLIDDYSRKV 598
           +F EHCI+GK ++V F+++ HTT+  LDY+HSDLWGP    S GG RYM+T++DDYSRKV
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKV 560


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  145 bits (367), Expect(3) = 8e-91
 Identities = 75/154 (48%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1277 SKDEWILDTGCTFHMCPDKDWFGSFESLDS-GVVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            S DEWILDT C+FH+C ++DWF S++S+ +  VV MG++    ++G G+V ++THDG+ R
Sbjct: 288  SHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTR 347

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IPG+ R LISL TL++ GY+YS  GGV+KV KG+LV +  +    NLY L GS
Sbjct: 348  TLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 407

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                 T LWH RLGHM E GM
Sbjct: 408  TLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGM 441



 Score =  141 bits (355), Expect(3) = 8e-91
 Identities = 62/114 (54%), Positives = 88/114 (77%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++ K +IE QT +++K L TDNG EFC   F+++C+++GI RHH+IP
Sbjct: 521 YFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQNGVA+R+NRTI+ K RCMLS++++  +FWAEA +TA Y+INRSP   LN
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLN 634



 Score = 97.1 bits (240), Expect(3) = 8e-91
 Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT  + +F EHC++GK ++V F++++H TK  LDY+H+DLWGP R PSLGG RYMLT
Sbjct: 450 LDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLT 509

Query: 624 LIDDYSRK 601
           +IDDYSRK
Sbjct: 510 IIDDYSRK 517


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  144 bits (363), Expect(3) = 2e-90
 Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
 Frame = -2

Query: 1277 SKDEWILDTGCTFHMCPDKDWFGSFESLDSG-VVYMGNNTQCRVLGKGTVNLRTHDGVIR 1101
            S DEWILDT C F +C ++DWF S +S+ +G VV MG+N    ++G G+V ++THDG+ R
Sbjct: 285  SHDEWILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTR 344

Query: 1100 TLTGVRYIPGLKRKLISLGTLESLGYRYSAEGGVLKVLKGALVIL*AN-RRGNLYALEGS 924
            TL  VR+IPG+ R LISL TL++ GY+YS  GGV+KV KG+LV +  +    NLY L GS
Sbjct: 345  TLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 404

Query: 923  T-XXXXXXXXXXXXXXXSTTLWHYRLGHMGEKGM 825
            T                 T LWH RLGHM E GM
Sbjct: 405  TLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGM 438



 Score =  142 bits (359), Expect(3) = 2e-90
 Identities = 60/114 (52%), Positives = 86/114 (75%)
 Frame = -3

Query: 592 FFLNHKHEVFSNFRDWKTLIENQTNQKIKRLRTDNGLEFCGRDFNEFCKEQGISRHHSIP 413
           +FL HK + F+ F++WK +IE Q  +++K LRTDNG EFC   F+++C+++GI RHH+IP
Sbjct: 518 YFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRKEGIGRHHTIP 577

Query: 412 GRPQQNGVADRINRTILEKVRCMLSHSKLGPQFWAEATSTASYIINRSPHRSLN 251
             PQQN VA+R+NRTI+ K RCMLS++++   +WAEA +T  Y+INRSP   LN
Sbjct: 578 YTPQQNSVAERMNRTIISKARCMLSNARMNKHYWAEAANTTCYLINRSPSILLN 631



 Score = 95.5 bits (236), Expect(3) = 2e-90
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
 Frame = -1

Query: 801 ITGCTTSH-EFREHCIYGKKRKVSFSSAIHTTKATLDYIHSDLWGP*RVPSLGGKRYMLT 625
           + GCT  + +F EHC++GK ++V F++++H TK  LDY+H+DLWGP R PSLGG  YMLT
Sbjct: 447 LDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLT 506

Query: 624 LIDDYSRKV 598
           +IDDYSRKV
Sbjct: 507 IIDDYSRKV 515