BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00013951
         (2862 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   431   0.0  
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   370   e-166
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]             319   e-144
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]             318   e-144
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             315   e-142
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...   250   e-124
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   242   e-123
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   277   e-118
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624...   236   e-118
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   216   e-111
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...   311   e-109
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   221   e-107
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...   221   e-107
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A...   292   e-107
gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus pe...   226   e-106
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...   281   e-101
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...   205   1e-98
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe...   207   2e-98
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   221   4e-98
gb|ABA97040.1| retrotransposon protein, putative, unclassified [...   203   5e-98

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  431 bits (1107), Expect(2) = 0.0
 Identities = 245/691 (35%), Positives = 355/691 (51%), Gaps = 9/691 (1%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDLILF+EAS  QA V++ CLD+FC AS  +VN  KS + FS      ++  +   L 
Sbjct: 687  FADDLILFSEASVEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTHLDIRDAVCNTLA 746

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            +   +DFG YLGVPT  GR +   YQ+LVD++  +L GW+ K+LS+A R     S  SS+
Sbjct: 747  MEATADFGKYLGVPTINGRSSKREYQYLVDRINGKLAGWKTKTLSIAGRATLIQSAFSSI 806

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P Y MQST LPRSTCD ID+    F+WG     +RVHL++WE I++ +K GGLG+RSMR 
Sbjct: 807  PYYTMQSTKLPRSTCDDIDRKSRSFLWGEQEGKRRVHLVAWENISKSKKEGGLGIRSMRQ 866

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
            +N+A L KLGWR++ EP++LW RILR KYC  R D+DMF+ ++ +S TW+G++    V+ 
Sbjct: 867  ANSAFLVKLGWRLLAEPSSLWSRILRAKYCDNRCDIDMFKEKSNASSTWRGILSSIDVVR 926

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDV-VAGATMADMW-VDNDWDWARLN 1221
            KG+ ++VGNG  T+FW H W   +PL S L  PIP + +  AT+ +MW + + W      
Sbjct: 927  KGINSAVGNGAKTLFWHHRWATSEPLIS-LASPIPPIELQDATVKEMWDLVSGWKVDVFA 985

Query: 1220 DLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSD--PLWP 1047
            + LP      + +  +I  ++A+D +YW G+  G F+ GSA  +  +  L   D  P W 
Sbjct: 986  NYLPEATLKLIAAHELIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELANMDAHPKWS 1045

Query: 1046 KIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRC-TLPESCLHVLRDCPVI 870
             +WK+P  QRVR FI++A+ +  + N  RFLR +   P C  C  + E+  H+LR CPV 
Sbjct: 1046 AVWKIPTPQRVRFFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVA 1105

Query: 869  KDIWLALSGNRLSASFFNTSNMRLWIFENI----RKGDVWSSTFGYMLWYSCKCRNELVF 702
            + +W  L    L        N+  WI +N+      G  W   F    W+  + RN+  F
Sbjct: 1106 RILWRKL--GMLGEHNREEINLGSWITKNLSADTMMGSEWLRVFAVSCWWLWRWRNDRCF 1163

Query: 701  SESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWVCPPVGWLV 522
            + +      S+ +  +   F                           L  W CP  GW+ 
Sbjct: 1164 NRNP-----SIPIDQVSFIFARVKEIKEAMDRNDTNKSQHSGRRKEILVRWQCPKEGWVK 1218

Query: 521  LNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVILHGLCAAVRLGY 342
            LNTD  SK         GL R P G     F   CG+C     EL  +L GL  A    +
Sbjct: 1219 LNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGSCTCTKAELLAVLRGLMIAWEGNH 1278

Query: 341  RRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCVNRCVNVPADIL 162
            +++++  DS      + +      P  +++ +C  LI        +    R  N  AD L
Sbjct: 1279 KQVIVSVDSELVAKLLISNAPPSSPYIHIINRCLSLIARKEWKIVIEHCYRETNRAADRL 1338

Query: 161  ANHALLNSCDFFEFTEPPPCISAALLADVVG 69
            AN  +            P  + A LL D+ G
Sbjct: 1339 ANMGVCAVERVVMIEAIPKDLHAILLEDLSG 1369



 Score =  248 bits (634), Expect(2) = 0.0
 Identities = 121/250 (48%), Positives = 169/250 (67%), Gaps = 2/250 (0%)
 Frame = -3

Query: 2860 SPEQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNAL 2681
            S  +V  ALK M P+KAPGPDG+  +FYQ  W +V   V   V  +++    PEG  +  
Sbjct: 436  SEVEVTLALKSMKPFKAPGPDGFQPLFYQRFWDLVKPNVMHLVSEILSGRDFPEGFNDTF 495

Query: 2680 MVLIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIID 2501
            +VLIPK++  Q   +FRPI L N+++KI TK+I+NRLKPILPS++SP   SF+  RQI D
Sbjct: 496  IVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPTQCSFVPNRQITD 555

Query: 2500 NVVIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKC 2321
            NV+IVQE+ H+M        +M +KID  KAYDR+RW+F+RE+L+   IP +LVDI+M C
Sbjct: 556  NVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFIRESLMELRIPQHLVDIVMNC 615

Query: 2320 QTFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPI-- 2147
             +  ++++LWNG       P+RG+RQGDPLS YL+V+CME L+H+I + V  G WKP+  
Sbjct: 616  VSSANLQILWNGEPMEKICPTRGLRQGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKA 675

Query: 2146 SIGGVDLSHL 2117
            S  G  +S+L
Sbjct: 676  SRNGPPISNL 685


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  370 bits (950), Expect(2) = e-166
 Identities = 244/705 (34%), Positives = 360/705 (51%), Gaps = 11/705 (1%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDLILFAEAS +Q  +IR  L++FC AS ++V+  KS + FS  V   +++ IS +  
Sbjct: 544  FADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESG 603

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I    + G YLG+P    RM  E +  ++++V+ RL GW+ +SLS+A R+    +VLSS+
Sbjct: 604  IGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSI 663

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P++VM + LLP ST D +D++   F+WGST + K+ HLLSW KI +P+  GG+GLRS R 
Sbjct: 664  PVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARD 723

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKY-CSGRLDVDMFQPRARSSHTWKGVVHG-ASV 1401
             N A++AK+GWR++Q+  +LW R++R KY   G  D    +P+ R S TW+ V  G   V
Sbjct: 724  MNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREV 783

Query: 1400 LTKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWV-DNDWDWARL 1224
            + KG+    G+G +  FW   WLL +PL  L  D IP+       AD W+  + W+   L
Sbjct: 784  VVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEIL 843

Query: 1223 NDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSD--PLW 1050
               LP  VK RL SV + +     D + W+GTQ G F+  SA  LL  ++    +    +
Sbjct: 844  GLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFF 903

Query: 1049 PKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCT-LPESCLHVLRDCPV 873
             +IWKL   +RVR FI++      + N  R  RH++ + +C  C    E+ LHVLRDCP 
Sbjct: 904  NRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPA 963

Query: 872  IKDIWLALSGNRLSASFFNTSNMRLWIFENIR--KGDVWSSTFGYMLWYSCKCRNELVFS 699
            ++ IW  L   R    FF+ S +  W+F N+   KG +W + FG  +W++ K R   VF 
Sbjct: 964  MEPIWRRLLPLRRHHEFFSQSLLE-WLFTNMDPVKG-IWPTLFGMGIWWAWKWRCCDVFG 1021

Query: 698  ESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLD---CWVCPPVGW 528
            E          +  + +                        P G  ++    W  P  GW
Sbjct: 1022 ERKICRDRLKFIKDMAE-----------EVRRVHVGAVGNRPNGVRVERMIRWQVPSDGW 1070

Query: 527  LVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVILHGLCAAVRL 348
            + + TD  S+         G  R+  G ++ GF    G+C +   ELW   +GL  A   
Sbjct: 1071 VKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDK 1130

Query: 347  GYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCVNRCVNVPAD 168
            G+RR+ +  D       ++      HP  +LV  CQ      +   ++S V R  N  AD
Sbjct: 1131 GFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFF-TRDWLVRVSHVYREANRLAD 1189

Query: 167  ILANHALLNSCDFFEFTEPPPCISAALLADVVGSSEATFPLA*VL 33
             LAN+A         F   P  +   LLADV G+    FP A +L
Sbjct: 1190 GLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTE---FPRAVLL 1231



 Score =  246 bits (628), Expect(2) = e-166
 Identities = 127/247 (51%), Positives = 162/247 (65%), Gaps = 2/247 (0%)
 Frame = -3

Query: 2851 QVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMVL 2672
            +V  A+K MG +KAPGPDGY  +FYQ  W  VG  V+  V      G++P  + +AL+VL
Sbjct: 296  EVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVL 355

Query: 2671 IPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNVV 2492
            I KV   +    FRP+SL NVLFKI TKM+V RLK ++  ++ PA ASFI GR  IDN+V
Sbjct: 356  IAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIV 415

Query: 2491 IVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQTF 2312
            +VQE +H+M        WM+LK+DL KAYDRVRW FL+ETL  A +       IM   T 
Sbjct: 416  LVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTD 475

Query: 2311 GSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI--G 2138
             SM +LWNG R+ SF P+RG+RQGDPLS YLFVLC+E L H+I  +V    WKPI++  G
Sbjct: 476  PSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCG 535

Query: 2137 GVDLSHL 2117
            G  LSH+
Sbjct: 536  GSKLSHV 542


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  319 bits (818), Expect(2) = e-144
 Identities = 215/702 (30%), Positives = 341/702 (48%), Gaps = 19/702 (2%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADDL+LF EAS  QA ++ DCLD F NAS  +VNFSKS +  S  V A L+R I + L
Sbjct: 684  FFADDLMLFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSIL 743

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
            ++PV    G+YLG+P    R++   +  ++DK+  +L  W+A SL+MA R V   + L++
Sbjct: 744  QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLAT 803

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +P Y MQ   LP STC+ IDK    F+WG   + +++H ++W +I +PR  GGLGLR  R
Sbjct: 804  VPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMAR 863

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A L K+ W++    + LW ++LR KY     D    Q ++  S  W+ ++ G  VL
Sbjct: 864  DFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK-NADFLHLQSQSNCSWGWRSIMKGKDVL 922

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN------DWD 1236
               +K +VGNGR   FW+  W+ D PL S       D +    M D+ V++       WD
Sbjct: 923  AGAIKWNVGNGRKINFWNDWWVGDGPLAS-----NTDCINQPHMTDIKVEDLITSQRRWD 977

Query: 1235 WARLNDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDP 1056
               L+++LP  + D +R+  I +  +  D L W  +  G+ +  SA  L+  +     D 
Sbjct: 978  TGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGH--DGDDR 1035

Query: 1055 LWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLPESCL-HVLRDC 879
                IW+    ++++ F++  V    + N  R  R +A +  CP C   +  L H+ R C
Sbjct: 1036 SHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRC 1095

Query: 878  PVIKDIWLALSGNRLSASFFNTSN---MRLWI------FENIRKGDVWSSTFGYMLWYSC 726
             + +  W     + +    F TSN   M  W+       +    G  WS  F Y+LW   
Sbjct: 1096 LLAEACW----DSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLW 1151

Query: 725  KCRNELVFSESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWV 546
            K RN LVF +++ +    +L  S +++                      T +      WV
Sbjct: 1152 KARNRLVF-DNNITAPSDILNRSFMES------------SEARCLLAKRTGLQTAFQTWV 1198

Query: 545  C---PPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVIL 375
                P  G+  LN+D   K         GL R+ +G+++AG+    G   S   ELW + 
Sbjct: 1199 VWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYICNIGTANSFLAELWGLR 1258

Query: 374  HGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCV 195
             GL  A   G+ +L+ ++DS +A + +  +   V PD  ++++  +L+ +   + K++ +
Sbjct: 1259 EGLLLAKNRGFTKLIAETDS-EAVVQVLRKDGPVTPDASILVKDCKLLLDHFQEIKVTHI 1317

Query: 194  NRCVNVPADILANHALLNSCDFFEFTEPPPCISAALLADVVG 69
             R  N  AD LAN    +S        PP  +   L  D +G
Sbjct: 1318 LREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQRDAIG 1359



 Score =  224 bits (570), Expect(2) = e-144
 Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 2/251 (0%)
 Frame = -3

Query: 2860 SPEQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNAL 2681
            S E+V  A+  M  Y +PGPDG PA+FYQ  W  VG  +++ V      G        A 
Sbjct: 434  SLEEVKKAVFGMKKYGSPGPDGIPAVFYQQFWGEVGPAMTDMVNHAFENGSTYISQLQAF 493

Query: 2680 MVLIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIID 2501
            M LIPK ++ +  A FRPI+LLNV FK+ +K++VNRL+PI+ +I+ P   SF+ GR  +D
Sbjct: 494  MTLIPKKDTPETAADFRPITLLNVSFKVISKVLVNRLRPIMSNIIGPHQNSFLPGRSTMD 553

Query: 2500 NVVIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKC 2321
            NV++ QEV+H+M  P    K M+LK+DL KAYD V W +L ETL     P  L+D+I+  
Sbjct: 554  NVILTQEVVHSMNNPRRKKKQMILKVDLQKAYDSVSWDYLEETLEDFGFPRRLIDLILFS 613

Query: 2320 QTFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI 2141
                S+ +LWNG R   FKP RG+RQGDPL+ YLF L ME L+H I   V    WKP+ I
Sbjct: 614  LQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHI 673

Query: 2140 --GGVDLSHLF 2114
              GG  +SHLF
Sbjct: 674  TRGGTGISHLF 684


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  318 bits (814), Expect(2) = e-144
 Identities = 214/702 (30%), Positives = 340/702 (48%), Gaps = 19/702 (2%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADDL+LF EAS  QA ++ DCLD F NAS  +VNFSKS +  S  V A L+R I + L
Sbjct: 684  FFADDLMLFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLLFCSSNVNAGLKRAIGSIL 743

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
            ++PV    G+YLG+P    R++   +  ++DK+  +L  W+A SL+MA R V   + L++
Sbjct: 744  QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLAT 803

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +P Y MQ   LP STC+ IDK    F+WG   + +++H ++W +I +PR  GGLGLR  R
Sbjct: 804  VPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMAR 863

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A L K+ W++    + LW ++LR KY     D    Q ++  S  W+ ++ G  VL
Sbjct: 864  DFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK-NADFLHLQSQSNCSWGWRSIMKGKDVL 922

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN------DWD 1236
               +K +VGNGR   FW+  W+ D PL S       D +    M D+ V++       WD
Sbjct: 923  AGAIKWNVGNGRKINFWNDWWVGDGPLAS-----NTDCINQPHMTDIKVEDLITSQRRWD 977

Query: 1235 WARLNDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDP 1056
               L+++LP  + D +R+  I +  +  D L W  +  G+ +  SA  L+  +     D 
Sbjct: 978  TGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGH--DGDDR 1035

Query: 1055 LWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLPESCL-HVLRDC 879
                IW+    ++++ F++  V    + N  R  R +A +  CP C   +  L H+ R C
Sbjct: 1036 SHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRC 1095

Query: 878  PVIKDIWLALSGNRLSASFFNTSN---MRLWI------FENIRKGDVWSSTFGYMLWYSC 726
             + +  W     + +    F TSN   M  W+       +       WS  F Y+LW   
Sbjct: 1096 LLAEACW----DSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYSTNWSLIFPYILWNLW 1151

Query: 725  KCRNELVFSESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWV 546
            K RN LVF +++ +    +L  S +++                      T +      WV
Sbjct: 1152 KARNRLVF-DNNITAPSDILNRSFMES------------SEARCLLAKRTGLQTAFQTWV 1198

Query: 545  C---PPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVIL 375
                P  G+  LN+D   K         GL R+ +G+++AG+    G   S   ELW + 
Sbjct: 1199 VWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLR 1258

Query: 374  HGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCV 195
             GL  A   G+ +L+ ++DS +A + +  +   V PD  ++++  +L+ +   + K++ +
Sbjct: 1259 EGLLLAKNRGFTKLIAETDS-EAVVQVLRKDGPVTPDASILVKDCKLLLDHFQEIKVTHI 1317

Query: 194  NRCVNVPADILANHALLNSCDFFEFTEPPPCISAALLADVVG 69
             R  N  AD LAN    +S        PP  +   L  D +G
Sbjct: 1318 LREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQRDAIG 1359



 Score =  222 bits (566), Expect(2) = e-144
 Identities = 116/251 (46%), Positives = 154/251 (61%), Gaps = 2/251 (0%)
 Frame = -3

Query: 2860 SPEQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNAL 2681
            S E+V  A+  M  Y +PGPDG PA+FYQ  W  VG  +++ V      G        A 
Sbjct: 434  SLEEVKKAVFGMKKYGSPGPDGIPAVFYQQFWGEVGPAMTDMVNHAFENGSTYISQLQAF 493

Query: 2680 MVLIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIID 2501
            M LIPK ++ +  A FRPI+LLN  FK+ +K++VNRL+PI+ +I+ P   SF+ GR  +D
Sbjct: 494  MTLIPKKDTPETAADFRPITLLNASFKVISKVLVNRLRPIMSNIIGPHQNSFLPGRSTMD 553

Query: 2500 NVVIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKC 2321
            NV++ QEV+H+M  P    K M+LK+DL KAYD V W +L ETL     P  L+D+I+  
Sbjct: 554  NVILTQEVVHSMNNPRRKKKQMILKVDLQKAYDSVSWDYLEETLEDFGFPRRLIDLILFS 613

Query: 2320 QTFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI 2141
                S+ +LWNG R   FKP RG+RQGDPL+ YLF L ME L+H I   V    WKP+ I
Sbjct: 614  LQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQTRVNARTWKPVHI 673

Query: 2140 --GGVDLSHLF 2114
              GG  +SHLF
Sbjct: 674  TRGGTGISHLF 684


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  315 bits (808), Expect(2) = e-142
 Identities = 213/702 (30%), Positives = 340/702 (48%), Gaps = 19/702 (2%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADDL+LF EAS  QA ++ DCLD F +AS  +VNFSKS +  S  V A L+R I + L
Sbjct: 1216 FFADDLMLFGEASEHQAQIMFDCLDSFSDASGLKVNFSKSLLFCSSNVNAGLKRAIGSIL 1275

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
            ++PV    G+YLG+P    R++   +  ++DK+  +L  W+A SL+MA R V   + L++
Sbjct: 1276 QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLAT 1335

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +P Y MQ   LP STC+ IDK    F+WG   + +++H ++W +I +PR  GGLGLR  R
Sbjct: 1336 VPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMAR 1395

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A L K+ W++    + LW ++LR KY     D    Q ++  S  W+ ++ G  VL
Sbjct: 1396 DFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK-NADFLHLQSQSNCSWGWRSIMKGKDVL 1454

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN------DWD 1236
               +K +VGNGR   FW+  W+ D PL S       D +    M D+ V++       WD
Sbjct: 1455 AGAIKWNVGNGRKINFWNDWWVGDGPLAS-----NTDCINQPHMTDIKVEDLTTSQRRWD 1509

Query: 1235 WARLNDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDP 1056
               L+++LP  + D +R+  I +  +  D   W  +  G+ +  SA  L+  +       
Sbjct: 1510 TGALHNILPINMIDMVRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSLIAGHDGDGRSH 1569

Query: 1055 LWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLPESCL-HVLRDC 879
             W  IW+    ++++ F++  V    + N  R  R +A +  CP C   +  L H+ R C
Sbjct: 1570 DW--IWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRC 1627

Query: 878  PVIKDIWLALSGNRLSASFFNTSN---MRLWI------FENIRKGDVWSSTFGYMLWYSC 726
             + +  W     + +    F TSN   M  W+       +    G  WS  F Y+LW   
Sbjct: 1628 LLAEACW----DSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLW 1683

Query: 725  KCRNELVFSESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWV 546
            K RN LVF +++ +    +L  S +++                      T +      WV
Sbjct: 1684 KARNRLVF-DNNITAPSDILNRSFMES------------SEARCLLAKRTGLQTAFQTWV 1730

Query: 545  C---PPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVIL 375
                P  G+  LN+D   K         GL R+ +G+++AG+    G   S   ELW + 
Sbjct: 1731 VWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLR 1790

Query: 374  HGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCV 195
             GL  A   G+ +L+ ++DS +A + +  +   V PD  ++++  +L+ +   + K++ +
Sbjct: 1791 EGLLLAKNRGFTKLIAETDS-EAVVQVLRKDGPVTPDASILVKDCKLLLDHFQEIKVTHI 1849

Query: 194  NRCVNVPADILANHALLNSCDFFEFTEPPPCISAALLADVVG 69
             R  N  AD LAN    +S        PP  +   L  D +G
Sbjct: 1850 LREGNQCADFLANLGQSSSWGTTILERPPDDLRIFLQRDAIG 1891



 Score =  220 bits (561), Expect(2) = e-142
 Identities = 116/251 (46%), Positives = 153/251 (60%), Gaps = 2/251 (0%)
 Frame = -3

Query: 2860 SPEQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNAL 2681
            S E+V  A+  M  Y +PGPDG PA+FYQ  W  VG  +++ V      G        A 
Sbjct: 966  SLEEVKKAVFGMKKYGSPGPDGIPAVFYQQFWGEVGPAMTDMVNHAFENGSTYISQLQAF 1025

Query: 2680 MVLIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIID 2501
            M LIPK ++ +  A FRPI+L NV FK+ +K++VNRL+PI+ +I+ P   SF+ GR  +D
Sbjct: 1026 MTLIPKKDTPETAADFRPITLPNVSFKVISKVLVNRLRPIMSNIIGPHQNSFLPGRSTMD 1085

Query: 2500 NVVIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKC 2321
            NV++ QEV+H+M  P    K M+LK+DL KAYD V W +L ETL     P  L+D+I+  
Sbjct: 1086 NVILTQEVVHSMNNPRRKKKQMILKVDLQKAYDSVSWDYLEETLEDFGFPRRLIDLILFS 1145

Query: 2320 QTFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI 2141
                S+ +LWNG R   FKP RG+RQGDPL  YLF L ME L+H I   V    WKP+ I
Sbjct: 1146 LQESSLAILWNGGRPPPFKPGRGLRQGDPLVPYLFNLVMERLAHDIQTRVNARTWKPVHI 1205

Query: 2140 --GGVDLSHLF 2114
              GG  +SHLF
Sbjct: 1206 TRGGTGISHLF 1216


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score =  250 bits (639), Expect(2) = e-124
 Identities = 193/678 (28%), Positives = 310/678 (45%), Gaps = 8/678 (1%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            F+ADD+ LF +AS     VI++ L++F N S  +VN SKS  IF  K+    +R ++  L
Sbjct: 683  FYADDVFLFGQASVRNGGVIQNVLEEFGNISGLRVNMSKSLAIFPPKMNPQRRRMLADFL 742

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
             +   + FG YLG      ++    Y  L++KV   + GWQAK L+MA R     SV+SS
Sbjct: 743  TMKGSTSFGKYLGCNILPNKLRRGDYDGLLEKVKSAINGWQAKYLNMAGRCTLIKSVVSS 802

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
             P+Y MQS+LLP S  + I+K    F+W        +  +SW++I  P   GGLG R + 
Sbjct: 803  FPVYGMQSSLLPVSVMNEIEKDCRKFLWNKMDKSHYLARMSWDRICSPTGKGGLGFRRLH 862

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A +AKLGW +I++   LW RIL+ +Y   R        +   S  W+ +V G  +L
Sbjct: 863  NWNLAFMAKLGWMIIKDETKLWVRILKARYWE-RGSFLSAVGKNHHSPIWRDIVKGRELL 921

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDNDWDWARLND 1218
             KGL   +GNGRST  W H W+   PL  ++   IP+ ++   ++++     WD  +++ 
Sbjct: 922  EKGLVRRIGNGRSTSLWYHWWVGGGPLVDVMGSNIPEFMSHWQVSNIIKRGRWDTKKISH 981

Query: 1217 LLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDP-LWPKI 1041
            LLP  +  +++ + +    +  D   W   + G FS  SA  L+     +      W  +
Sbjct: 982  LLPPDILKQIKEIPLASMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSWRGL 1041

Query: 1040 WKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIAS-SPMCPRCTLP-ESCLHVLRDCPVIK 867
            W+     + +  I+  ++   L   +   + I + +P C  C  P E  +H+ RDC V  
Sbjct: 1042 WRKNIPFKYKLLIWNGIHN-ILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVAS 1100

Query: 866  DIWLALSGNRL--SASFFNTSNMRLWIFENIRKGDVWSSTFGYMLWYSCKCRNELVFSES 693
             +W+ +  +    + + F       WI  N+ + D W + F    W+    RN+ VF  +
Sbjct: 1101 SVWIEILKHHKPNNQNLFFNLEWEEWIDFNLNQHDYWVTKFTTAFWHIWCSRNKTVFECA 1160

Query: 692  DSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWVCPPVGWLVLNT 513
             +  + +   + +V  F+                  +G+ V   +  W  P  G+L LNT
Sbjct: 1161 VNHPKFT--YNRVVADFF-----TNIRAFQVNNTQGNGSKV---VLRWKPPHQGFLKLNT 1210

Query: 512  DVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVILHGLCAAVRLGYRRL 333
            D   K         G+FRD  G +  GF  +  A      EL  I  GL  A    Y +L
Sbjct: 1211 DGAWKADWENAGIGGVFRDAVGNWELGFAKRVDAGSPEAAELMAIREGLQVAWDCNYHKL 1270

Query: 332  LIQSDSAQACLAIAARGLRV--HPDYYLVLQ-CQQLIHEANGDFKLSCVNRCVNVPADIL 162
             ++ D A+  + + A+ L    HP   +V+  C  L    + +F    + R  N  A  L
Sbjct: 1271 EVECD-AKGVVQLLAKPLEAENHPLGVIVMDICILLTRHWSVEF--LHIKREGNKVAHCL 1327

Query: 161  ANHALLNSCDFFEFTEPP 108
            A  A+    +   F  PP
Sbjct: 1328 AAEAVNQVEERVIFINPP 1345



 Score =  223 bits (568), Expect(2) = e-124
 Identities = 108/248 (43%), Positives = 157/248 (63%), Gaps = 1/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            +++ +AL  M P K+PGPDG  A F++  W  +G  V   + R      +P G  ++ + 
Sbjct: 436  DEIKEALAQMAPLKSPGPDGIQAFFFKKYWEQMGPSVVSLIIRAFENNRIPSGLSDSFLA 495

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPK+ES  C   FRPI L N ++K+ TK+I NR+KPIL  ++ P+  SF+ GR I +N+
Sbjct: 496  LIPKIESPVCCKDFRPIGLCNTVYKMITKVIANRIKPILGELIHPSQTSFVPGRNIQENI 555

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            +I +E+             M LKIDL+KAYD + W F+RETL   + P +L+ +IM C +
Sbjct: 556  IIAKEMAFLFKKSNPKRNIMALKIDLSKAYDSLEWGFIRETLQGFNFPQSLIALIMDCIS 615

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIGG 2135
              ++ L+WNG  + SF PSRG+RQGDPLS Y+FVLCME LS +IS+ ++ G WKPI I  
Sbjct: 616  SPAISLIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCMERLSMLISDRIRDGSWKPIKISS 675

Query: 2134 -VDLSHLF 2114
             + +SH+F
Sbjct: 676  DLGVSHIF 683


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
            gi|7268307|emb|CAB78601.1| reverse transcriptase like
            protein [Arabidopsis thaliana]
          Length = 929

 Score =  242 bits (618), Expect(2) = e-123
 Identities = 123/248 (49%), Positives = 161/248 (64%), Gaps = 2/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            ++V  A++ MG +KAPGPDGY  +FYQ  W  VG  VS+ V      G++P+ + + L+V
Sbjct: 247  DEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLV 306

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            L+ KV   +    FRP+SL NVLFKI TKM+V RLK ++  ++ PA ASFI GR   DN+
Sbjct: 307  LLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNI 366

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            V+VQE +H+M        WM+LK+DL KAYDR+RW FL ETL  A +    +  IM+C  
Sbjct: 367  VVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVA 426

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI-- 2141
               M LLWNG ++ SF P RG+RQGDP+S YLFVLC+E L H I  AV  G WK ISI  
Sbjct: 427  GPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISISQ 486

Query: 2140 GGVDLSHL 2117
            GG  +SH+
Sbjct: 487  GGPKVSHV 494



 Score =  230 bits (586), Expect(2) = e-123
 Identities = 140/404 (34%), Positives = 212/404 (52%), Gaps = 6/404 (1%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDLILFAEAS +Q                 +V+  KS + FS  V   L+  I+ +  
Sbjct: 496  FADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVSRDLEGLITAETG 538

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I    + G YLG+P    R+  + +  ++++V+ RL GW+++SLS+A R+    +VL S+
Sbjct: 539  IGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSI 598

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P++ M S LLP S  + +DK    F+WGST + ++ HLLSW+K+ RP+  GGLGLR+ + 
Sbjct: 599  PIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKD 658

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKY-CSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
             N A+LAK+GWR++ +  +LW R+LR KY  +   D     P+A  S TW+ +       
Sbjct: 659  MNRALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHDSSWLVPKATWSSTWRSI------- 711

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN-DWDWARLN 1221
              GL+  V  G         W+L +PLC+     +      A + + W +   WD  +L 
Sbjct: 712  GVGLREGVAKG---------WILHEPLCTRATCLLSPEELNARVEEFWTEGVGWDMVKLG 762

Query: 1220 DLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDP----L 1053
              LP  V DRL +V I       DR+ W+GT  G F+ GSA  LL     + S P     
Sbjct: 763  QCLPRSVTDRLHAVVIKGVLGLRDRISWQGTSDGDFTVGSAYVLLTQE--EESKPCMESF 820

Query: 1052 WPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPR 921
            + +IW + A +RVR F+++   +  + N  R  RHI    +C R
Sbjct: 821  FKRIWGVIAPERVRVFLWLVGQQVIMTNVERVRRHIGDIEVCQR 864


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 732

 Score =  277 bits (708), Expect(2) = e-118
 Identities = 160/444 (36%), Positives = 249/444 (56%), Gaps = 9/444 (2%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDLILFAEAS +Q  VIR  L++FC AS ++V+  KS + FS+ V   L + IS +  
Sbjct: 206  FADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKLISDESG 265

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I    + G YLG+P    R+  + +  +++K+T RL GW+ + LS+A RV    +VLSS+
Sbjct: 266  ISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSI 325

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P++ M +  LP+ST D +DK    F+WGS+   ++ HL+SW+++ +PR  GGLG+R  + 
Sbjct: 326  PVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQD 385

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKY-CSGRLDVDMFQPRARSSHTWKGVVHG-ASV 1401
             N A+L+K+GWR+IQ+ ++LW RI+R  Y      D    + R+  S TW+ V  G   V
Sbjct: 386  MNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREV 445

Query: 1400 LTKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN-DWDWARL 1224
            +  GL   +G+GR  +FW   WL + PL  LLV   P    G    D+  +   WD A +
Sbjct: 446  VIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDLRRNGIGWDMATI 505

Query: 1223 NDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSD--PLW 1050
               +    + +L+S  +     A DR+ W  +Q G F   +    L  +     D    +
Sbjct: 506  APYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFF 565

Query: 1049 PKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCT-LPESCLHVLRDCPV 873
             ++W + A +RVR F+++   +A + N+ R  RH++++ +C  C    ES +HVLRDCP 
Sbjct: 566  DRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPA 625

Query: 872  IKDIWLAL---SGNRLSASFFNTS 810
            ++ IWL L     N +SA+    S
Sbjct: 626  MEGIWLRLISDLANEVSAAHLKLS 649



 Score =  177 bits (450), Expect(2) = e-118
 Identities = 96/205 (46%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
 Frame = -3

Query: 2827 MGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMVLIPKVESLQ 2648
            MG YKAPGPDG+  +FYQ  W +VG  VS  V      G +PEG+ +A++VLI KV   +
Sbjct: 1    MGKYKAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPE 60

Query: 2647 CPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNVVIVQEVLHT 2468
                FRPISL NVLFK  TK +V RLK ++  ++ PA ASFI GR   DN+VI+QE +H+
Sbjct: 61   RITQFRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHS 120

Query: 2467 MAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQTFGSMELLWN 2288
            M        WM+LK+DL KAYDR+RW FL +TL    +P   +  IM+C T  SM LLWN
Sbjct: 121  MRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQCVTEPSMSLLWN 180

Query: 2287 --GSRSGSFKPSRGVRQGDPLSSYL 2219
                    +KP   + QG P  S++
Sbjct: 181  EHSIARKDWKPI-SLSQGGPKLSHI 204


>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
          Length = 1635

 Score =  236 bits (601), Expect(2) = e-118
 Identities = 112/249 (44%), Positives = 161/249 (64%), Gaps = 2/249 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            E++  A+  M P KAPG DG  AIFYQ  W +VG    +++  +     +P      ++V
Sbjct: 928  EEIRHAVFNMSPLKAPGVDGLHAIFYQSQWHIVGESFCKAIKEVFQTQCLPAEVNRTVLV 987

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPK+E     + +RPISL  V++K  TK+I NRL+ +LP ++ P   SF+ GR I +N+
Sbjct: 988  LIPKIEQPTSFSMYRPISLCTVMYKTITKIIANRLQELLPELIGPHQTSFVPGRHITENI 1047

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            ++ QE++H+M        +M +K+DL KAYDR+ W+F++ETL   ++P  L+++IM+C T
Sbjct: 1048 IVAQEIIHSMRRKKGRKGFMAIKVDLGKAYDRLSWTFIQETLQELNLPTMLINLIMECIT 1107

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG- 2138
              +M +LWNG  S  F P RGVRQGDPLS Y+FVLC+E LSH IS ++Q G WKPI +  
Sbjct: 1108 TATMNVLWNGELSSEFCPGRGVRQGDPLSPYIFVLCIERLSHGISRSIQQGHWKPIRLAR 1167

Query: 2137 -GVDLSHLF 2114
             G  LSHLF
Sbjct: 1168 MGTPLSHLF 1176



 Score =  218 bits (555), Expect(2) = e-118
 Identities = 141/479 (29%), Positives = 214/479 (44%), Gaps = 6/479 (1%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADDL+  +EASS QA +I   +D+F  +S  +VN SK+ + FS  + A     I + L
Sbjct: 1176 FFADDLLFLSEASSQQAIIINKIIDEFSASSGAKVNKSKTLVYFSANISAMEASRIGSDL 1235

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
               V  + G YLGVP    R++ + YQ +VDK+ +RL GW A  L++A R+  A SVL +
Sbjct: 1236 GYSVTDNLGKYLGVPLCHSRISKQTYQSIVDKIDQRLSGWNASHLTLAGRITLAQSVLQA 1295

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            + +Y MQ+T LPRS    ID+    F+W  + +H+++ L++W+ I  P+  GGLG + + 
Sbjct: 1296 ISVYAMQTTKLPRSIKMKIDQLCRRFIWSGSAEHQKMSLVNWDMICTPKCKGGLGFKKLD 1355

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A+L K  WR+I EP  L  ++L  KY     +     P    SH WK +       
Sbjct: 1356 IMNHALLMKNTWRLITEPTKLSNQVLLTKYGVHLDEFPTSLPTRYGSHLWKAMGSTWEQT 1415

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDNDWDWARLND 1218
              G+  ++G+G+                                            R+  
Sbjct: 1416 RVGMCWNIGDGK--------------------------------------------RVRY 1431

Query: 1217 LLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDPLWPKIW 1038
            LLP  +  ++ SV         D  +W  +  G FS  SA  LL   +       W  +W
Sbjct: 1432 LLPNNILLKIASVHPPTASHGADSFFWGASSNGNFSVKSAYELLDDPIGNGDHSFWCLVW 1491

Query: 1037 KLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLP-ESCLHVLRDCPVIKDI 861
                   +R F+++ ++      +    RH+  S  C RC  P E  LH LRDC   + +
Sbjct: 1492 SWKGPHSIRVFLWLLLHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTARRV 1551

Query: 860  WLALSGNRLSASFF-----NTSNMRLWIFENIRKGDVWSSTFGYMLWYSCKCRNELVFS 699
            W  L  N    SFF     +   M L   +N    + W   FG  +W     RN  +F+
Sbjct: 1552 WSHLLPNNYPHSFFLCPLSDWLQMNLMRKKNNTSQEYWRVCFGVAVWRLWFWRNNFLFN 1610


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  216 bits (549), Expect(2) = e-111
 Identities = 189/655 (28%), Positives = 288/655 (43%), Gaps = 3/655 (0%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADD++LF +A SSQ   I +  D+F  AS  ++N SKS   +S         +++    
Sbjct: 683  FADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISG 742

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I   +  G YLG P   GR     + F+++K+  RL  W+ + L+   R+  ATSVLS++
Sbjct: 743  IQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTI 802

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P Y MQ   LP++ CD+ID+    F+W  + ++K +HL++W+ I RP+ +GGLG+RS R 
Sbjct: 803  PTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIRSARD 861

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
            +N  +L KL W M+Q  N LW  +L  KY SG   ++     + SS +W  ++    +L 
Sbjct: 862  ANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA-NVNSNSSPSWFSIIRAKDILK 920

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDNDWDWARLNDL 1215
             G     G G S+ FW   W     L SL+  PI D+       D+ +            
Sbjct: 921  TGYSWRAGAGTSS-FWFSNWSSHGYLGSLV--PIIDI------HDIHL------------ 959

Query: 1214 LP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDPLWPKIWK 1035
                VKD L SV                       T S            +D +W  IW+
Sbjct: 960  ---TVKDVLTSV----------------------ETSS------------NDSVWSWIWQ 982

Query: 1034 LPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRC-TLPESCLHVLRDCPVIKDIW 858
            L A ++ +  I++A + A     +   R +A +  C RC    ES LH +RDC     IW
Sbjct: 983  LTAPEKYKLLIWLACHNAAPTLSLLHHRKMAPAATCSRCGENDESFLHCVRDCKHSAAIW 1042

Query: 857  LALSGNRLSASFFNTSNMRLWIFENIRKGDVWSSTFGYMLWYSCKCRNELVFS-ESDSST 681
              L    ++A+FF+ S+++ WI  N   G   + TF   LW+S + RN +  S E+   T
Sbjct: 1043 HKL--GFVTAAFFSVSSVQDWI-RNFSSGS-RAITFLAGLWWSWRHRNLMCLSNETWPLT 1098

Query: 680  RISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWVCPPVGWLVLNTDVVS 501
            RIS  ++  ++A                       P  A +  W        +LN D   
Sbjct: 1099 RISFRINDSINAIRSAFVKSNVI-----------QPDSARMVKWNQGNHQCHILNVDGSC 1147

Query: 500  KXXXXXXXXXGLFRDPSGVFIAGFQ-FKCGACGSLTVELWVILHGLCAAVRLGYRRLLIQ 324
                      G+FR+  G +++G+  F   +   L  EL  +  GL  A  +G   L   
Sbjct: 1148 LGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACY 1207

Query: 323  SDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCVNRCVNVPADILA 159
            SDS      I     + H    L+   + L+   N  F +    R  N  AD LA
Sbjct: 1208 SDSLLTINLITRTTSKYHTYAVLIQDIKDLLSAHN--FSVYHCFREGNQCADYLA 1260



 Score =  215 bits (548), Expect(2) = e-111
 Identities = 111/248 (44%), Positives = 151/248 (60%), Gaps = 2/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            ++V+ AL  M PYKAPGPDG+  IF++  W +VG  V   V      G       N L+ 
Sbjct: 434  KEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIA 493

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPK++S      FRPISL N L+KI TK++V+RL+P L +++ P  +SF+ GR   DN 
Sbjct: 494  LIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNS 553

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            +I+QE+LH M        ++  K+DL KA+D V W FL   L+    P  +V +IM C +
Sbjct: 554  IILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVS 613

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI-- 2141
              +  LLWNG++   FKP+ G+RQGDPLS YLF+LCME LS  I +AV  G W+PI I  
Sbjct: 614  SANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIIN 673

Query: 2140 GGVDLSHL 2117
             G  +SHL
Sbjct: 674  DGPQISHL 681


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score =  311 bits (796), Expect(2) = e-109
 Identities = 219/702 (31%), Positives = 342/702 (48%), Gaps = 20/702 (2%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDLILFAEAS +Q  V+R  L+KFC AS ++V+  KS + FS+ V   L++ IS +  
Sbjct: 136  FADDLILFAEASVAQIRVVRKVLEKFCIASGQKVSLEKSKIFFSQNVHRDLEKFISDESG 195

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I    + G YLG+P    R+  + +  ++ +V+ RL GW+ + LS+A R+    SVLSS+
Sbjct: 196  IKSTKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLTKSVLSSI 255

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P++ M +  LP++T D  D+    FVWGS+ + K+ HLL+W KI   ++ GGLG+RS R 
Sbjct: 256  PIHTMSTIALPKATLDGFDRISKSFVWGSSTEKKKQHLLAWNKIYCTKQAGGLGIRSSRA 315

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
             N A+LAK+GWR++Q+ ++LW R++                          ++    V+ 
Sbjct: 316  MNTALLAKIGWRLLQDKSSLWARVI--------------------------MLGMREVVI 349

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDNDWDWARLNDL 1215
             G+   VG+G++T FW   WL++ PL   ++ P P  +  A + D+W  +   W  L ++
Sbjct: 350  PGVSWVVGDGQTTRFWADKWLMNTPLREDIIGPAPVGLEEARVCDLW-QHGRGWL-LENI 407

Query: 1214 LP*VVKD---RLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSD--PLW 1050
             P V  D   RL++V +       DRL W  +  G F+  SA   L  +    SD   ++
Sbjct: 408  APYVAPDIRLRLKAVVVDNITGVRDRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMY 467

Query: 1049 PKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCT-LPESCLHVLRDCPV 873
             ++WK+ A +RV+ F+++ V++  + N  R  RH++ + +C  C    E+ +H+LRDCP 
Sbjct: 468  DRVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPA 527

Query: 872  IKDIWLALSGNRLSASFFNTSNMRLWIFENI-RKGDV-----------WSSTFGYMLWYS 729
            +  IW  +   R   +FF T  +  W+++N+   G V           W    G +   +
Sbjct: 528  MYGIWTRIIPRRKRGTFF-TQTLLEWVYDNLGDSGKVDGCPWSCVRWGWKWRCGNVFGVN 586

Query: 728  CKCRNELVFSESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVG--APLD 555
             KCR+ + F    +S    V+ + LV+                     SG   G    + 
Sbjct: 587  GKCRDMVKFVRDRAS---EVIQAHLVEG-------------------NSGKIRGRIERMV 624

Query: 554  CWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVIL 375
             WV P  GWL LNTD  SK         G+ R   G +I GF    G C +   ELW + 
Sbjct: 625  SWVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVY 684

Query: 374  HGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCV 195
            +GL  A      RL ++ DS      +       HP  +LV  C   I   +   ++S V
Sbjct: 685  YGLYIAWERKITRLEVEVDSELVVGFLTTWISDSHPLSFLVRLCYGFI-SRDWIVRISHV 743

Query: 194  NRCVNVPADILANHALLNSCDFFEFTEPPPCISAALLADVVG 69
             R  N  AD LAN+A      F  F      + + L+ D  G
Sbjct: 744  YREANRLADGLANYASSLPLGFHSFDVCLKIVYSVLVEDKNG 785



 Score =  115 bits (287), Expect(2) = e-109
 Identities = 66/158 (41%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
 Frame = -3

Query: 2584 IVNRLKPILPSIVSPAHASFIHGRQIIDNVVIVQEVLHTMAAPTSSTKWMMLKIDLAKAY 2405
            +V RLK ++P ++ P  +SFI G    DN+V+VQE +H+M                    
Sbjct: 1    MVMRLKRVMPKLIGPTQSSFIPGWLSADNIVVVQEAVHSMRRKKG--------------- 45

Query: 2404 DRVRWSFLRETLIRAHIPINLVDIIMKCQTFGSMELLWNGSRSGSFKPSRGVRQGDPLSS 2225
                      TL  A++P + ++ IMKC    +M +LWNG ++ SF PSRG+RQGDPLS 
Sbjct: 46   ---------HTLHAANLPSSWINWIMKCVKEPAMTVLWNGEKTESFIPSRGLRQGDPLSP 96

Query: 2224 YLFVLCMEFLSHIISEAVQMGRWKPISI--GGVDLSHL 2117
            YLFVLC+E L H I  AV    WKPIS+  GG  LSH+
Sbjct: 97   YLFVLCLERLCHQIDLAVGTKEWKPISMSRGGPLLSHI 134


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score =  221 bits (564), Expect(2) = e-107
 Identities = 182/699 (26%), Positives = 307/699 (43%), Gaps = 31/699 (4%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADD I FA+A S     +++ L  +C+AS +++N  KSS+ F K+    ++  + + L+
Sbjct: 696  FADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQ 755

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            +       SYLG+PT  G  TT  ++FL +++ KR+ GW  + LS A       +V  ++
Sbjct: 756  VDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAI 815

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P YVM    +P S C+ +   I    WG     K++H  SW  ++ P+ LGG+G R    
Sbjct: 816  PNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTT 875

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
             N A+L +  WR++ +P++L  R+L+G+Y       +  QP++  S TW+ ++ G  +L 
Sbjct: 876  FNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKS-PSFTWRSLLFGRELLA 934

Query: 1394 KGLKASVGNGRSTIFWDHAWLLD-QPLCSLLVDPIPDVVAGATMADMWVDND--WDWARL 1224
            KG++  VG+G++   +   W+   +P     + P P     AT++ +  ++   WD   +
Sbjct: 935  KGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFP---TDATVSCLMNEDARCWDGDLI 991

Query: 1223 NDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARL--------------- 1089
              L P  +   +  + I    DA D   W   +LG++S  SA  L               
Sbjct: 992  RSLFPVDIAKEILQIPISRHGDA-DFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGR 1050

Query: 1088 -LGSNLLQVSDPLWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTL 912
             + S LL+ S   W  +WK+ A  +++  ++ A +E          RHI S+  C  C  
Sbjct: 1051 GMASRLLE-SQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNR 1109

Query: 911  PESCLHVLRDCPVIKDIWLALSGN---RLSASFFNTSNMRLWIFENIRKGDVWSST-FGY 744
             ++  HV   CP    IW  + G    +L  + F+T  MR WIF+ +++G   ++T    
Sbjct: 1110 DDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFST--MRQWIFDFLKRGSSHANTLLAV 1167

Query: 743  MLWYSCKCRNELVFSESDSST----RISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGT 576
              W+  + RN    +++++ T    R+ + + S VD                      G 
Sbjct: 1168 TFWHIWEARNN---TKNNNGTVHPQRVVIKILSYVDMI-------LKHNTKTVDGQRGGN 1217

Query: 575  PVGAPLDCWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSG-VFIAGFQFKCGACGSL 399
                P   W  PP    ++N+D              L RD +G   +A  +         
Sbjct: 1218 TQAIPR--WQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPE 1275

Query: 398  TVELWVILHGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEAN 219
              E   I   L  A   G   +++ SD    CL +  R      D   V    + I +  
Sbjct: 1276 LAEALAIRRALGLAKEEGLEHIVMASD----CLTVIRRIQTSGRDRSGVGCVIEDIKKLA 1331

Query: 218  GDFKLSC---VNRCVNVPADILANHALLNSCDFFEFTEP 111
              F L     VNR  N+ A  LA +A L++C  +    P
Sbjct: 1332 STFVLCSFMHVNRLSNLAAHSLARNAELSTCTVYRSVIP 1370



 Score =  197 bits (500), Expect(2) = e-107
 Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 2/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            E++  AL  MG  KAPGPDG+PA+FYQ +W ++   +  +V   +    +PEG C++++V
Sbjct: 447  EEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVV 506

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPKV +    + FRPISL NVL+KIA+K++ NRLKP LP IVS   ++F+ GR I D+ 
Sbjct: 507  LIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSA 566

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            ++  E LHT+    +   +  LKID+ KAYDRV W++L   L +     + ++ +M+C +
Sbjct: 567  LVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVS 626

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG- 2138
                 +  NG  +    PSRG+RQGDP+S YLF+LC E LS ++ +    G  + I  G 
Sbjct: 627  SVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGR 686

Query: 2137 -GVDLSHL 2117
             G  +SHL
Sbjct: 687  HGPPISHL 694


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
            protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score =  221 bits (564), Expect(2) = e-107
 Identities = 182/699 (26%), Positives = 307/699 (43%), Gaps = 31/699 (4%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADD I FA+A S     +++ L  +C+AS +++N  KSS+ F K+    ++  + + L+
Sbjct: 653  FADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQ 712

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            +       SYLG+PT  G  TT  ++FL +++ KR+ GW  + LS A       +V  ++
Sbjct: 713  VDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAI 772

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P YVM    +P S C+ +   I    WG     K++H  SW  ++ P+ LGG+G R    
Sbjct: 773  PNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTT 832

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
             N A+L +  WR++ +P++L  R+L+G+Y       +  QP++  S TW+ ++ G  +L 
Sbjct: 833  FNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKS-PSFTWRSLLFGRELLA 891

Query: 1394 KGLKASVGNGRSTIFWDHAWLLD-QPLCSLLVDPIPDVVAGATMADMWVDND--WDWARL 1224
            KG++  VG+G++   +   W+   +P     + P P     AT++ +  ++   WD   +
Sbjct: 892  KGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFP---TDATVSCLMNEDARCWDGDLI 948

Query: 1223 NDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARL--------------- 1089
              L P  +   +  + I    DA D   W   +LG++S  SA  L               
Sbjct: 949  RSLFPVDIAKEILQIPISRHGDA-DFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGR 1007

Query: 1088 -LGSNLLQVSDPLWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTL 912
             + S LL+ S   W  +WK+ A  +++  ++ A +E          RHI S+  C  C  
Sbjct: 1008 GMASRLLE-SQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNR 1066

Query: 911  PESCLHVLRDCPVIKDIWLALSGN---RLSASFFNTSNMRLWIFENIRKGDVWSST-FGY 744
             ++  HV   CP    IW  + G    +L  + F+T  MR WIF+ +++G   ++T    
Sbjct: 1067 DDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFST--MRQWIFDFLKRGSSHANTLLAV 1124

Query: 743  MLWYSCKCRNELVFSESDSST----RISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGT 576
              W+  + RN    +++++ T    R+ + + S VD                      G 
Sbjct: 1125 TFWHIWEARNN---TKNNNGTVHPQRVVIKILSYVDMI-------LKHNTKTVDGQRGGN 1174

Query: 575  PVGAPLDCWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSG-VFIAGFQFKCGACGSL 399
                P   W  PP    ++N+D              L RD +G   +A  +         
Sbjct: 1175 TQAIPR--WQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPE 1232

Query: 398  TVELWVILHGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEAN 219
              E   I   L  A   G   +++ SD    CL +  R      D   V    + I +  
Sbjct: 1233 LAEALAIRRALGLAKEEGLEHIVMASD----CLTVIRRIQTSGRDRSGVGCVIEDIKKLA 1288

Query: 218  GDFKLSC---VNRCVNVPADILANHALLNSCDFFEFTEP 111
              F L     VNR  N+ A  LA +A L++C  +    P
Sbjct: 1289 STFVLCSFMHVNRLSNLAAHSLARNAELSTCTVYRSVIP 1327



 Score =  197 bits (500), Expect(2) = e-107
 Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 2/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            E++  AL  MG  KAPGPDG+PA+FYQ +W ++   +  +V   +    +PEG C++++V
Sbjct: 404  EEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVV 463

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPKV +    + FRPISL NVL+KIA+K++ NRLKP LP IVS   ++F+ GR I D+ 
Sbjct: 464  LIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSA 523

Query: 2494 VIVQEVLHTMAAPTSSTKWMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            ++  E LHT+    +   +  LKID+ KAYDRV W++L   L +     + ++ +M+C +
Sbjct: 524  LVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVS 583

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG- 2138
                 +  NG  +    PSRG+RQGDP+S YLF+LC E LS ++ +    G  + I  G 
Sbjct: 584  SVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGR 643

Query: 2137 -GVDLSHL 2117
             G  +SHL
Sbjct: 644  HGPPISHL 651


>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 768

 Score =  292 bits (747), Expect(2) = e-107
 Identities = 205/696 (29%), Positives = 312/696 (44%), Gaps = 5/696 (0%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FF DDL+LFAEA+S QA  I   L  FC +S  +VN SK+ + FSK V   +   I   L
Sbjct: 110  FFTDDLLLFAEATSGQAQCINSVLGDFCLSSGTKVNQSKTHVYFSKNVPDAVATRIWRDL 169

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
               V  D G YLG+P    R++ + YQ ++DK  ++L GW A  LS+A R+    SVL +
Sbjct: 170  GYTVTKDLGKYLGMPLLHSRVSQQTYQGILDKTDQKLLGWAASQLSLAGRITLTQSVLQA 229

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +P+Y MQ+T LP S    +D+    F+W    + +++ L+SW  I +P+  GGLG + + 
Sbjct: 230  VPIYAMQTTNLPGSIKTKLDQICRRFLWSGNDELRKMSLVSWHNICQPKMAGGLGFKRLD 289

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
              N A+L K+ W +I EPN L  ++L  KY    L++    P    SH WK V       
Sbjct: 290  IMNEALLLKVAWHLITEPNKLCVQVLSTKYGVPPLEIPHTLPTRYGSHLWKSVGRVWDYA 349

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQ-PLCSLLVDPIPDVVAGATMAD-MWVDNDWDWARL 1224
             +G++  VGNG    FW   W      L  L + PIP  ++   +AD +  D  W+W + 
Sbjct: 350  KRGIRWIVGNGWKVKFWWDCWATTPLTLADLAIHPIPPDLSDLYVADFVSTDGSWNWPKF 409

Query: 1223 NDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDPLWPK 1044
            + +LP      + S+      + VD++YW  +  G F+  SA  LL  +  Q  D  W  
Sbjct: 410  SHILPHQAVMIIASIHPPSACNGVDQVYWAASPQGDFTVKSAYDLLDQSRGQERDSYWKI 469

Query: 1043 IWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLP-ESCLHVLRDCPVIK 867
             W     Q ++ FI++ ++           R +   P C RC    E+ +HVL DCP  K
Sbjct: 470  AWSWKGPQSIKIFIWLVLHNRLKTRAELATRRLNIEPSCERCGAGLENTIHVLHDCPYSK 529

Query: 866  DIWLALSGNRLSASFFNTSNMRLWIFEN--IRKGDVWSSTFGYMLWYSCKCRNELVFSES 693
                   G +L    F  +  RLW + N  I   D W S+    +    K R   +    
Sbjct: 530  A--STSLGTKLWRVIFGVAIWRLWFWRNRFIFTKDHWESS---AIALDIKVRAAEI---Q 581

Query: 692  DSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWVCPPVGWLVLNT 513
              ++ ++    S V+  W                             W  P   W+ LNT
Sbjct: 582  QCNSSLTATDKSRVEK-WIR---------------------------WGAPTWPWVKLNT 613

Query: 512  DVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVILHGLCAAVRLGYRRL 333
            D  +K          L RD  GV+  G+    G C   + ELW + HGL  A   GYRR+
Sbjct: 614  D-GAKKPSDHAGAGELIRDYKGVWQIGYCANLGFCSVTSAELWGLFHGLSIAWLHGYRRV 672

Query: 332  LIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKLSCVNRCVNVPADILANH 153
            +++ DS      ++     ++    L+   Q+LI   +   +++ + R  N  +D LA +
Sbjct: 673  IVEVDSRCILQLVSNSNPTINEHLSLITAIQELIGR-DWLIQMNHIYREANAASDFLATY 731

Query: 152  ALLNSCDFFEFTEPPPCISAALLADVVGSSEATFPL 45
            +L        F  PP  +   L  DV G + +   L
Sbjct: 732  SLAFPVGLHYFQSPPLNLLNILNNDVSGVAHSRLVL 767



 Score =  126 bits (316), Expect(2) = e-107
 Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = -3

Query: 2437 MMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQTFGSMELLWNGSRSGSFKPS 2258
            M +K+DL KAYDR+ W+F+ ETL    +PI L+ +IM+C T  SM +LW+G  +  F PS
Sbjct: 1    MAIKVDLEKAYDRLSWNFIYETLTELALPIGLIQLIMECITSTSMNILWHGELTDDFSPS 60

Query: 2257 RGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG--GVDLSHLF 2114
            RGVRQGDPLS Y+FVLC+E LSH I +++    WKPI +   G  LSHLF
Sbjct: 61   RGVRQGDPLSPYIFVLCVERLSHGIYQSIHQDHWKPIRLSRLGTPLSHLF 110


>gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus persica]
          Length = 992

 Score =  226 bits (577), Expect(2) = e-106
 Identities = 188/702 (26%), Positives = 311/702 (44%), Gaps = 22/702 (3%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADD  LFA A+ +    ++D LD +  A  +QVNF KS++ FSK V    Q  ++  +
Sbjct: 325  FFADDSFLFAWANMADCMALKDILDTYERALGQQVNFQKSAVCFSKNVHRGDQLMLAQFM 384

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
             IP V     YLG+P    +     +  L +++ K+L+ W+ K LS A + +    V  +
Sbjct: 385  GIPCVDHHSQYLGLPMVLDKKKGASFNHLKERLWKKLQTWKGKLLSGAGKEILIKVVAQA 444

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +P+Y M   LLP+  C+ ++K +  F W S+ ++K++H ++W+++  P++ GGLG R++ 
Sbjct: 445  IPIYTMSCFLLPKYVCEDLNKLVAQFWWNSSTENKKIHWMAWDRLCAPKEEGGLGFRNLH 504

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVD-MFQPRARSSHTWKGVVHGASV 1401
              N A+LAK GWR++Q P++L  ++L+ KY   R  ++    P A  S  WK +    +V
Sbjct: 505  AFNLALLAKQGWRLLQNPDSLVTKVLKAKYFPTRSFLETTVSPYA--SVVWKSLCDARTV 562

Query: 1400 LTKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDNDWDW---A 1230
            + +G +  VG+G +   W+  W L QP    +  P P+  A   ++D+   +  +W    
Sbjct: 563  IIQGSRWQVGSGDTIGIWEDRW-LPQPNSFQIFSPRPEHSAITKVSDLIHGDSREWNAPL 621

Query: 1229 RLNDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSA---ARLLGSNLLQVSD 1059
              N   P  V   +RS+ + ++    D L W   + G+F+  SA   AR L S+  + S 
Sbjct: 622  LQNVFFPEEVM-LIRSIPLSLR-LTPDMLVWHYDKKGMFTVKSAYHVARSLHSSTGRASS 679

Query: 1058 P-------LWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLP-ES 903
                     W  +WK     RV+ F +  ++           + ++    C  C  P +S
Sbjct: 680  SNSDAVARNWSLLWKAIVPARVKTFWWRVISGILPTKANLARKKVSLDEECMLCEGPVKS 739

Query: 902  CLHVLRDCP------VIKDIWLALSGNRLSASFFNTSNMRLWIFENIRKGDVWSSTFGYM 741
             +H+LRDCP        KD W+     +LS+  F T  M  W     R G         +
Sbjct: 740  LIHILRDCPWNNGAHSPKD-WVCRCAEQLSSQDFATFLMVGWAIWEARNG---------L 789

Query: 740  LWYSCKCRNELVFSESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAP 561
            LW + K R+E V   +       + VS+ + +                      +  G  
Sbjct: 790  LWNNKKSRHEQVSLHASLRLHDFLRVSNCLGS---------------------QSRQGQI 828

Query: 560  LDCWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFK-CGACGSLTVELW 384
               W  P    L +N D   K          + RD +G F+AG   K      +  VE  
Sbjct: 829  KQMWQPPHENSLKINVDGAWKPGTTEGGVGVVVRDSTGKFVAGCATKLTNVFSAPQVEAL 888

Query: 383  VILHGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLIHEANGDFKL 204
                    A+  GY+ ++ +SD+ Q   A+    +       +V   + L+ +  G+   
Sbjct: 889  AARTNTILAMERGYQNVVFESDALQIVTALRNHSIDRSVIGPVVEDTKSLLTQITGE-GF 947

Query: 203  SCVNRCVNVPADILANHALLNSCDFFEFTEPPPCISAALLAD 78
            + + R  N  A  LA  AL      + F EPP  IS  L  D
Sbjct: 948  THIRRTANGVAHRLARFALHIGGSLYWFEEPPDFISDILYED 989



 Score =  189 bits (481), Expect(2) = e-106
 Identities = 103/249 (41%), Positives = 154/249 (61%), Gaps = 3/249 (1%)
 Frame = -3

Query: 2851 QVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMVL 2672
            ++ +A+  M P KAPGPDG P IF+Q  W +VG+ V+ ++   +  G + +      +VL
Sbjct: 77   EIHEAVFQMYPTKAPGPDGMPPIFFQKYWHIVGSDVTRAIKDFLTSGRLLQKINFTHVVL 136

Query: 2671 IPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNVV 2492
            IPKV+  +  +  RPISL NVLFKIATK++ NRLK IL  I+SP+ ++ I GR I DN +
Sbjct: 137  IPKVKHPKDMSQLRPISLCNVLFKIATKVLANRLKLILDKIISPSQSALISGRLISDNTI 196

Query: 2491 IVQEVLHTMAAPTSSTK-WMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQT 2315
            +  E++H +       K +M LK+D++KAYDR+ WSFL   + +       + +++ C +
Sbjct: 197  LAAEIIHYLRRRRRGKKGFMALKMDMSKAYDRIEWSFLEAIMRKLGFAEQWIQLMLTCIS 256

Query: 2314 FGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI-- 2141
              S   + NG+  G   PSRG+RQGDPLS YLF+LC E L+ +I++  + G  K +SI  
Sbjct: 257  TVSYSFVINGTPHGFLHPSRGLRQGDPLSPYLFLLCAEGLTALIAQKEREGFLKGVSICR 316

Query: 2140 GGVDLSHLF 2114
            G   +SHLF
Sbjct: 317  GAPAISHLF 325


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score =  281 bits (719), Expect(2) = e-101
 Identities = 187/608 (30%), Positives = 275/608 (45%), Gaps = 8/608 (1%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADDL+LFAEAS  QA  +  CLD FC +S +++N  K+ + FSK V   L+ DI     
Sbjct: 111  FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDIIQHTG 170

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
               V+  G YLG     GR +   +  +++K+  +L GW+ + LS+A R+  +  V+SS+
Sbjct: 171  FNQVNSLGKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSKFVISSI 230

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P Y MQ   +P++ CD I+K   GFVWG +   ++ HL+SW+    P+  GGLG +    
Sbjct: 231  PYYHMQYAKIPKTICDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHH 290

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
             N A L K+ W +I++P+ LW R+L  KY       +    +   S  WK +V       
Sbjct: 291  MNEAFLMKMLWNLIKQPDKLWCRVLYSKYGRNNDLNNNISSQPYDSPLWKAIVGIWDDFK 350

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQ-PLCSLLVDPIPDVVAGATMADMWVDNDWDWARLND 1218
            + +   +G+GRST FW   W+ +   L S       D       A +     WD   L D
Sbjct: 351  RHVIWQIGDGRSTNFWLDKWISNNTSLFSSSTQSYVDTTISVRDA-INTSGVWDLNFLMD 409

Query: 1217 LLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVSDPLWPKIW 1038
             L   + +++ ++      D  D + W GT    F+  SA  L   N   V    W  +W
Sbjct: 410  NLHVDIVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGD-WKTLW 468

Query: 1037 KLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTL-PESCLHVLRDCPVIKDI 861
                  R++ FI++A +   L N  R    +  SP CP C    E+ +HVLRDC     +
Sbjct: 469  NWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQV 528

Query: 860  WLALSGNRLSASFFNTSNMRLWIFENIRK---GD---VWSSTFGYMLWYSCKCRNELVFS 699
            WL L  +    +FF + + R W+F N+ K   GD    W +TF    WY    RN+ +F 
Sbjct: 529  WLRLIPHNYITNFF-SFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFE 587

Query: 698  ESDSSTRISVLVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLDCWVCPPVGWLVL 519
                      LV                           G         W+ PP GW+ L
Sbjct: 588  IGFQRPSNPTLVIQKFTREIEDNTKLVHKSSHQKETIYIG---------WMRPPFGWVKL 638

Query: 518  NTDVVSKXXXXXXXXXGLFRDPSGVFIAGFQFKCGACGSLTVELWVILHGLCAAVRLGYR 339
            N D   K         GL RD  G +I G+  K G C +   E+W +  GL  A R    
Sbjct: 639  NCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMAWRENTT 698

Query: 338  RLLIQSDS 315
             L+++SDS
Sbjct: 699  HLIVESDS 706



 Score =  118 bits (296), Expect(2) = e-101
 Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
 Frame = -3

Query: 2437 MMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQTFGSMELLWNGSRSGSFKPS 2258
            M +KIDL KAYD + W+F+ E L     P  L++II  C +  S +++WNG +S SF PS
Sbjct: 1    MTIKIDLEKAYDLLNWNFVEECLKECKFPSKLINIIHHCISTPSYKIMWNGDKSESFYPS 60

Query: 2257 RGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG--GVDLSHL 2117
            RG+RQGDPLS YLFV+CME LSHII++ V+   WKP+  G  G  +SHL
Sbjct: 61   RGIRQGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHL 109


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score =  205 bits (522), Expect(2) = 1e-98
 Identities = 150/587 (25%), Positives = 252/587 (42%), Gaps = 27/587 (4%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADD ++F+ AS ++   ++   D++  AS +  NF KSSM F  K+    +  I     
Sbjct: 658  FADDSLVFSTASVAECKHLKGIFDRYAKASGQIFNFEKSSMFFGGKIPEEQKAAIRNIFN 717

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            + VVS +  YLG+P+  GR  T  ++ +  +V  ++  WQ K  S   + +   +V  ++
Sbjct: 718  LNVVSKYEKYLGLPSMIGRKKTSFFREVKLRVLSKINNWQHKMFSSGGKEILIKAVAQAV 777

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P Y M    LP+  C+ I   I  F WGS  D + +H   W+K++  +  GGLG R    
Sbjct: 778  PAYAMSVFKLPKGLCEEIQSEIAKFWWGSKKDKRGIHWARWDKLSCAKSRGGLGFRDFIS 837

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
             N A++AK GWR+IQ PN+L  ++LR +Y      +D  +P +  S  W+ ++ G  V+ 
Sbjct: 838  FNQAMVAKQGWRLIQFPNSLVSKVLRARYFKSCSFLDA-KPGSNPSFIWRSILWGRQVIQ 896

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDP-IP-DVVAGATMADMWVDNDWDWARLN 1221
            KG +  +GNG + + +   W+        +  P +P D   G  M D   +N+W+ A+LN
Sbjct: 897  KGARWRIGNGSNILVYKDNWIPRPDTFKPISPPTLPIDTTVGELMDD---ENNWNVAKLN 953

Query: 1220 DLLP*VVKDRLRSVRI-IMQDDAVDRLYWRGTQLGVFSTGSAARLL------------GS 1080
                 + +D    ++I + +   VD + W   + G +S  S  ++             GS
Sbjct: 954  QHF--MQEDTEAILKIPLPRSQKVDEMMWHYDKHGEYSVKSGYQIALKLKAPDEPSNSGS 1011

Query: 1079 NLLQVSDPLWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLP-ES 903
            N        W  +W +   ++++ F++ A        E  + R     P+C  C    E+
Sbjct: 1012 N-----SKRWKAVWSMELPEKMKIFMWRAARNLLPTAENLWKRKCLKDPICQGCNREVET 1066

Query: 902  CLHVLRDCPVIKDIWLALSGNRLSASFFNTSNMRLWIFENIRKGDVWSS----------T 753
              H L DC   + IW   +    S    N  N  +  F      +VWS+           
Sbjct: 1067 VRHALLDCKAARKIWYHATS---SVQISNAQNQDILEFIY----EVWSTWGKTKAEQTIA 1119

Query: 752  FGYMLWYSCKCRNELVFSESDSSTRISVL-VSSLVDAFWXXXXXXXXXXXXXXXXXXSGT 576
            F + +W++   RN+ +F    S  R S     SL++A+                      
Sbjct: 1120 FCWAIWFA---RNKRIFEGKKSDPRASAAKAESLLEAYHRARKPDASHIHNVKRIVQKK- 1175

Query: 575  PVGAPLDCWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFIA 435
                    W  PP  +L +N D              + +DPSG  +A
Sbjct: 1176 --------WEPPPGNFLKVNVDAAINNRDQVAGLGAVIKDPSGKIVA 1214



 Score =  184 bits (468), Expect(2) = 1e-98
 Identities = 101/248 (40%), Positives = 145/248 (58%), Gaps = 2/248 (0%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            E++ +AL  M P KAPGPDG PA F+Q +W  V + V  +   ++N G       +  + 
Sbjct: 409  EEIVEALHQMSPTKAPGPDGLPAAFFQKHWQTVRSSVIGTCMHILNEGGNLSALNHTFIA 468

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPK    +    FRPISL NV+++I  K I NRLKPIL  I+SP  ++FI  R I DNV
Sbjct: 469  LIPKTTKPKKVTEFRPISLCNVIYRIVAKTIANRLKPILSQIISPTQSAFIPNRLISDNV 528

Query: 2494 VIVQEVLHTMAAPTSSTKWMM-LKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQ 2318
            +I  E LH +       K ++ LK+D++KAYDRV W+FL++T+ +       +++IM C 
Sbjct: 529  IIGYECLHKIRHSQGKKKGLVALKLDISKAYDRVEWTFLKQTMKKLGFSRKWLELIMGCI 588

Query: 2317 TFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISIG 2138
            T  S  ++ NG+  G F P RG+RQG PLS YLF++C E  S ++ +A    R   +   
Sbjct: 589  TSVSFSVIINGTPKGFFHPERGLRQGCPLSPYLFIICTEVFSSLLLQAETKKRISGLRFA 648

Query: 2137 -GVDLSHL 2117
              V +SHL
Sbjct: 649  EDVTISHL 656


>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
          Length = 1755

 Score =  207 bits (526), Expect(2) = 2e-98
 Identities = 125/437 (28%), Positives = 220/437 (50%), Gaps = 17/437 (3%)
 Frame = -2

Query: 2117 FFADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQL 1938
            FFADD  +FA+A+ +   V++   + + +AS +Q+N  KS + FS  +    Q  +++ L
Sbjct: 1098 FFADDSFVFAKATDNNCGVLKHIFEVYEHASGQQINCQKSCVAFSANIHMDTQSRLASVL 1157

Query: 1937 EIPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSS 1758
             +P V    +YLG+P   GR  T  +++L ++V K+L+GW+ ++LS+A + V    V  S
Sbjct: 1158 GVPRVDSHATYLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQTLSIAGKEVLLKVVAQS 1217

Query: 1757 LPLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR 1578
            +PLYVM   LLP+  C  I++ +  F WG   +++++H + WE++ + +  GG+G R ++
Sbjct: 1218 IPLYVMSCFLLPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLCKAKTEGGMGFRCLQ 1277

Query: 1577 *SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPR--ARSSHTWKGVVHGAS 1404
              N A+LAK GWR++  P++L  R+L+ KY       + ++    +R S  WK +     
Sbjct: 1278 AFNMAMLAKQGWRLVHNPHSLASRLLKAKYFP---QTNFWEATLGSRPSCVWKSIWTARK 1334

Query: 1403 VLTKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN---DWDW 1233
            VL  G +  +G+G+S   W   W+      +++  P+ D +    ++++  +     WD 
Sbjct: 1335 VLEMGSRFQIGDGKSVRIWGDKWVPRPATFAVITSPL-DGMENTKVSELICNEGSPQWDL 1393

Query: 1232 ARLNDL-LP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLL---------- 1086
             +LN+L LP  V D +R    I      DR+ W   + G+F+  SA R+           
Sbjct: 1394 QKLNNLFLPVDVVDIVRIPLSIRAPP--DRIVWNYDKHGLFTVKSAYRVALRVTSGDEDE 1451

Query: 1085 GSNLLQVSDPLWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRC-TLP 909
             S+    +  LW  IW      +++ F +   ++          + +    MC  C  + 
Sbjct: 1452 SSSSNSDTGMLWRHIWNATVPTKLKIFAWRVAHDILPTKANLIKKGVDMQDMCMFCGDIT 1511

Query: 908  ESCLHVLRDCPVIKDIW 858
            ES LHVL  CP     W
Sbjct: 1512 ESALHVLAMCPFAVATW 1528



 Score =  182 bits (462), Expect(2) = 2e-98
 Identities = 99/252 (39%), Positives = 149/252 (59%), Gaps = 3/252 (1%)
 Frame = -3

Query: 2860 SPEQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNAL 2681
            S +++ DA+  M P KAPGPDG P +FYQ  W +VG  V  +V   +    +     +  
Sbjct: 847  SYQEIKDAVFQMQPSKAPGPDGLPPLFYQKYWRIVGDDVVAAVRAFLQSNEMLRQLNHTF 906

Query: 2680 MVLIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIID 2501
            + LIPKV+  +  A  RPISL NVL++I  K + NR+K ++ S++S + ++F+ GR I D
Sbjct: 907  VTLIPKVKEPRTMAQLRPISLCNVLYRIGAKTLANRMKFVMQSVISESQSAFVPGRLITD 966

Query: 2500 NVVIVQEVLHTMAAPTSSTKWMM-LKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMK 2324
            N ++  E+ H +       K  + LK+D++KAYDRV W FL + ++    PI  V ++M 
Sbjct: 967  NSIVAFEIAHFLKQRRRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMD 1026

Query: 2323 CQTFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPIS 2144
            C T  S   L NG  +    P+RG+RQGDPLS YLF+LC E  + ++S+A + G+ + I 
Sbjct: 1027 CVTTVSYSFLVNGEPTRILYPTRGLRQGDPLSPYLFLLCAEGFTTLLSKAERQGQLQGIV 1086

Query: 2143 I--GGVDLSHLF 2114
            I  G   +SHLF
Sbjct: 1087 ICRGAPTVSHLF 1098


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  221 bits (564), Expect(2) = 4e-98
 Identities = 147/501 (29%), Positives = 244/501 (48%), Gaps = 11/501 (2%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            FADD + F + + +    + + L K+  AS + +N +KS++ FS K    ++R +   L 
Sbjct: 622  FADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLR 681

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I      G YLG+P   GR   + +  +VD++ +R   W  + LS A + +   +VLSS+
Sbjct: 682  IDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSM 741

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P Y M    LP S C  I   +  F W S PD +++  +SW+K+  P   GGLG R    
Sbjct: 742  PSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFRE--- 798

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYCSGRLDVDMFQPRARSSHTWKGVVHGASVLT 1395
                I AKL WR+++EP++L  R+L GKYC+    +D     + +SH W+G++ G  +L 
Sbjct: 799  ----IEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLR 854

Query: 1394 KGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWVDN--DWDWARLN 1221
            KGL  S+G G S   W  AW L        + P  +     ++ D+   +   W+   + 
Sbjct: 855  KGLGWSIGQGDSINVWTEAW-LSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIR 913

Query: 1220 DLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLLGSNLLQVS--DPLWP 1047
              LP   +D++R + I       D L W   + G ++T +   L   N    S  D  W 
Sbjct: 914  KHLP-QYEDQIRKITINAL-PLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQ 971

Query: 1046 K-IWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRCTLPESCLHVLRDCPVI 870
            K IWK+    +V+ F++ A+  A    E    R+I +   C RC   ES LH++  CP  
Sbjct: 972  KNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSLHLMLLCPYA 1031

Query: 869  KDIWLALSGNRLSASFFNTSNMRLWIFENIR------KGDVWSSTFGYMLWYSCKCRNEL 708
            K +W  L+    + S    S++ L + +  R       G   +  + ++LW+  K RN L
Sbjct: 1032 KKVW-ELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRL 1090

Query: 707  VFSESDSSTRISVLVSSLVDA 645
            +F ++ S +   +++ +++DA
Sbjct: 1091 IF-DNHSCSEEGLVLKAILDA 1110



 Score =  166 bits (421), Expect(2) = 4e-98
 Identities = 93/249 (37%), Positives = 144/249 (57%), Gaps = 4/249 (1%)
 Frame = -3

Query: 2851 QVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMVL 2672
            ++ +AL  +   KAPGPDG+ A F+   W ++ A VS  +        +        + L
Sbjct: 373  EIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTL 432

Query: 2671 IPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNVV 2492
            IPK+ + +  + +RPI+L NV +KI  K++  RL+P L  ++S   ++F+ GR I DNV+
Sbjct: 433  IPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVL 492

Query: 2491 IVQEVLHTMAAPTSSTKW--MMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQ 2318
            I  E+LH +   + + K+  M +K D++KAYDR++W+FL+E L+R       +  +M+C 
Sbjct: 493  ITHEILHFLRV-SGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCV 551

Query: 2317 TFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI- 2141
               S   L NGS  GS  PSRG+RQGDPLS YLF+LC E LS +  +A + G    I + 
Sbjct: 552  CTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVA 611

Query: 2140 -GGVDLSHL 2117
             G   ++HL
Sbjct: 612  RGSPQVNHL 620


>gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1913

 Score =  203 bits (517), Expect(2) = 5e-98
 Identities = 168/659 (25%), Positives = 274/659 (41%), Gaps = 31/659 (4%)
 Frame = -2

Query: 2114 FADDLILFAEASSSQADVIRDCLDKFCNASSEQVNFSKSSMIFSKKVRATLQRDISTQLE 1935
            F DD +LF +A   QA +I+  L+++   + + VN +K S++F     A  Q  I   L+
Sbjct: 1256 FVDDTLLFFKADCEQARLIKGVLNEYALGTGQLVNPNKCSILFDDTSHAETQDAIKNLLQ 1315

Query: 1934 IPVVSDFGSYLGVPTACGRMTTERYQFLVDKVTKRLRGWQAKSLSMAERVVFATSVLSSL 1755
            I   +    YLG PT  GR+   ++Q L +K+ KR+  W    LS   + +    V+ ++
Sbjct: 1316 IVCHNFEDKYLGFPTPEGRLNKGKFQSLQEKMWKRIILWGENYLSSGGKEIMLKVVIQAI 1375

Query: 1754 PLYVMQSTLLPRSTCDAIDKHILGFVWGSTPDHKRVHLLSWEKIARPRKLGGLGLRSMR* 1575
            P+YVM    LP S C+ ++K    F WG+    ++ H  +W  + +P+  GGL  R  R 
Sbjct: 1376 PVYVMSIFRLPESVCEDLNKLARNFWWGADKGKRKTHWRAWSCLTKPKHNGGLAFRDFRL 1435

Query: 1574 SNAAILAKLGWRMIQEPNALWGRILRGKYC-SGRLDVDMFQPRARSSHTWKGVVHGASVL 1398
             N A+LA+  WR++ +P++L  R+++ KY  +G L    F   A  S  W+ + HG ++L
Sbjct: 1436 FNQALLARQAWRLLDKPDSLCARVMKAKYYPNGSLVDTAFGGNA--SPGWRAIEHGLALL 1493

Query: 1397 TKGLKASVGNGRSTIFWDHAWLLDQPLCSLLVDPIPDVVAGATMADMWV------DNDWD 1236
             KG+   +GNGRS   W   W+     C         +         WV      D  WD
Sbjct: 1494 KKGIVWRIGNGRSVRIWRDPWIPRDHSCR-------PITTKRNCRVKWVSDLLGQDGSWD 1546

Query: 1235 WARLNDLLP*VVKDRLRSVRIIMQDDAVDRLYWRGTQLGVFSTGSAARLL---------G 1083
              +++ +   +  D +  +R  ++ +  D L W   +LG FS  SA +L           
Sbjct: 1547 VQKVSRVFLPIDADEILKIRTSVRLEE-DFLSWHPDRLGQFSVRSAYKLAISLDYADESS 1605

Query: 1082 SNLLQVSDPLWPKIWKLPAQQRVRQFIYMAVNEAFLYNEVRFLRHIASSPMCPRC-TLPE 906
            S+  Q    +W  IWK    Q+V+ F + A N      E +  R++  S +C  C    E
Sbjct: 1606 SSSGQNPQKIWDLIWKCNVPQKVKVFCWRAANNCLANQENKKKRNLERSEICCICGNETE 1665

Query: 905  SCLHVLRDCPVIKDIWLAL-SGNRLSASFFNTSNMRLWIFENIRKGDVWS-STFGYMLWY 732
               H L  CP    +W A+ +   LS +    +    W F+ I             MLW 
Sbjct: 1666 DVSHALSRCPHAVHLWEAMKAAGSLSLNVAGNATGGSWFFDQIENTPAEERMMLCMMLWR 1725

Query: 731  SCKCRNELVFSESDSSTRISV-LVSSLVDAFWXXXXXXXXXXXXXXXXXXSGTPVGAPLD 555
                RNEL   +      +S   + S   +                      T + +  +
Sbjct: 1726 IWFVRNELYHGKVPPPIAVSKRFLESYCSSLLEIKQHPHADVVRGKHVVQQPTRMRSEAN 1785

Query: 554  --------CWVCPPVGWLVLNTDVVSKXXXXXXXXXGLFRDPSGVFI---AGFQFKCGAC 408
                     W  P +GW+ LN D              + RD  G  I    GF  +C + 
Sbjct: 1786 HLRRVVPARWEKPQMGWMKLNVDGSYDSNSSKGGIGVVLRDSVGTVIFSACGFLERCSS- 1844

Query: 407  GSLTVELWVILHGLCAAVRLGYRRLLIQSDSAQACLAIAARGLRVHPDYYLVLQCQQLI 231
              L  EL     G+  A++     ++++SD   A   I +    +    YLV   ++L+
Sbjct: 1845 -PLESELLACKEGINLALQWTLLPIILESDCLIAVNMIQSVKKEMSQLAYLVRDIRELM 1902



 Score =  184 bits (467), Expect(2) = 5e-98
 Identities = 100/252 (39%), Positives = 147/252 (58%), Gaps = 3/252 (1%)
 Frame = -3

Query: 2854 EQVWDALKVMGPYKAPGPDGYPAIFYQHNWSVVGAQVSESVPRLVNYGIVPEGSCNALMV 2675
            +++ DAL  +GP KAPG DG+PA F+Q NW  +   V  +V       I+PEG  +  +V
Sbjct: 1006 QEIADALFQIGPIKAPGLDGFPARFFQRNWDAIKKDVVSAVKSFFETSIMPEGVNDTAIV 1065

Query: 2674 LIPKVESLQCPAYFRPISLLNVLFKIATKMIVNRLKPILPSIVSPAHASFIHGRQIIDNV 2495
            LIPKV+       FRPISL NV++KI +K +VNRL+PIL  +VS   ++F+ GR I DN 
Sbjct: 1066 LIPKVDQPMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDNA 1125

Query: 2494 VIVQEVLHTMAAPTSSTK-WMMLKIDLAKAYDRVRWSFLRETLIRAHIPINLVDIIMKCQ 2318
            ++  E  H +    ++ K     K+DL+KAYDRV W FL +T+ +       +  IM C 
Sbjct: 1126 LLAFECFHFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRWIKWIMTCL 1185

Query: 2317 TFGSMELLWNGSRSGSFKPSRGVRQGDPLSSYLFVLCMEFLSHIISEAVQMGRWKPISI- 2141
            +     + +NG+   +F PSRG+RQGDPLS +LF+   +  S ++ E V  G   P+ I 
Sbjct: 1186 SSVRYSIKFNGTLLDTFAPSRGLRQGDPLSPFLFLFVADGFSRLMEERVAAGDITPVKIC 1245

Query: 2140 -GGVDLSHLFLL 2108
             G + +SHL  +
Sbjct: 1246 RGALGISHLLFV 1257