BLASTX nr result
ID: Rheum21_contig00012624
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00012624
(337 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 58 1e-06
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 57 3e-06
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein... 57 3e-06
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 57 3e-06
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 56 6e-06
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein... 56 6e-06
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 56 6e-06
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S... 56 6e-06
ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea ma... 56 6e-06
ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293... 56 6e-06
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi... 55 7e-06
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote... 55 7e-06
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein... 55 7e-06
dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare] 55 7e-06
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 55 1e-05
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 55 1e-05
>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 57.8 bits (138), Expect = 1e-06
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G +VPENDGRRHALTL+VSDYKRRMGLL
Sbjct: 616 ATVGCRVPENDGRRHALTLTVSDYKRRMGLL 646
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A IGV+VPENDGRRH+LTLSVSDYKRR GL+
Sbjct: 594 ATIGVRVPENDGRRHSLTLSVSDYKRRRGLV 624
>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 619
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +GV+VPE+DGRRHALTLSVSDYKRR GLL
Sbjct: 589 ATVGVRVPEDDGRRHALTLSVSDYKRRRGLL 619
>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 657
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +GV+VPE+DGRRHALTLSVSDYKRR GLL
Sbjct: 627 ATVGVRVPEDDGRRHALTLSVSDYKRRRGLL 657
>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
tuberosum]
Length = 652
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G VPENDGRRHALTLSVSDYKRR GLL
Sbjct: 622 ATVGCSVPENDGRRHALTLSVSDYKRRRGLL 652
>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
italica]
Length = 650
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G KVP+NDGRRHALTLSVSDYKRR GLL
Sbjct: 620 ATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 650
>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
[Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform 2 [Solanum lycopersicum]
Length = 645
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G VPENDGRRHALTLSVSDYKRR GLL
Sbjct: 615 ATVGCSVPENDGRRHALTLSVSDYKRRRGLL 645
>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
gi|241942942|gb|EES16087.1| hypothetical protein
SORBIDRAFT_08g017010 [Sorghum bicolor]
Length = 656
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G KVP+NDGRRHALTLSVSDYKRR GLL
Sbjct: 626 ATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 656
>ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea mays]
gi|223950353|gb|ACN29260.1| unknown [Zea mays]
gi|413916604|gb|AFW56536.1| plus-3 domain-containing
protein [Zea mays]
Length = 650
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G KVP+NDGRRHALTLSVSDYKRR GLL
Sbjct: 620 ATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 650
>ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293|gb|ACL52521.1| unknown
[Zea mays] gi|414878213|tpg|DAA55344.1| TPA:
hypothetical protein ZEAMMB73_654453 [Zea mays]
Length = 647
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G KVP+NDGRRHALTLSVSDYKRR GLL
Sbjct: 617 ATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 647
>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
Length = 661
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G K+P+NDGRRHALTLSVSDYKRR GLL
Sbjct: 631 ATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 661
>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum
urartu]
Length = 681
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G K+P+NDGRRHALTLSVSDYKRR GLL
Sbjct: 651 ATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 681
>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
[Brachypodium distachyon]
Length = 658
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G K+P+NDGRRHALTLSVSDYKRR GLL
Sbjct: 628 ATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 658
>dbj|BAJ96429.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G K+P+NDGRRHALTLSVSDYKRR GLL
Sbjct: 631 ATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 661
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
notabilis]
Length = 658
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G +VPENDGRRHALTLSV DYKRR GLL
Sbjct: 628 ATVGCRVPENDGRRHALTLSVGDYKRRRGLL 658
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 2 AEIGVKVPENDGRRHALTLSVSDYKRRMGLL 94
A +G +VPENDGRRHALTL+VSDYKRR GLL
Sbjct: 630 ATVGCQVPENDGRRHALTLTVSDYKRRRGLL 660