BLASTX nr result
ID: Rheum21_contig00012623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00012623
(205 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 93 3e-17
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 93 4e-17
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854... 92 5e-17
emb|CBI35694.3| unnamed protein product [Vitis vinifera] 92 5e-17
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 92 9e-17
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 91 2e-16
gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea] 91 2e-16
ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein... 91 2e-16
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein... 91 2e-16
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 91 2e-16
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 90 4e-16
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 89 8e-16
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 87 2e-15
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein... 87 2e-15
ref|XP_003554309.1| PREDICTED: RNA polymerase-associated protein... 87 2e-15
ref|XP_003521320.1| PREDICTED: RNA polymerase-associated protein... 87 2e-15
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 87 3e-15
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 86 5e-15
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein... 85 1e-14
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein... 85 1e-14
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform X2 [Glycine max]
Length = 656
Score = 93.2 bits (230), Expect = 3e-17
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N+LHNFE+PISLA LQ FGG QGA AGF+A+KQKIEA +G +V
Sbjct: 575 KLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRV 632
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 92.8 bits (229), Expect = 4e-17
Identities = 43/58 (74%), Positives = 52/58 (89%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVD+GT+ N+LH+FEIPISL ALQ FGGPQGA AGF+A+KQ+IEA +G +V
Sbjct: 579 KLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQV 636
>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
Length = 493
Score = 92.4 bits (228), Expect = 5e-17
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N LH+FE+PISLA LQ FGGPQGA AGF+A+KQ+IEA +G +V
Sbjct: 412 KLVDTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRV 469
>emb|CBI35694.3| unnamed protein product [Vitis vinifera]
Length = 205
Score = 92.4 bits (228), Expect = 5e-17
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N LH+FE+PISLA LQ FGGPQGA AGF+A+KQ+IEA +G +V
Sbjct: 134 KLVDTSAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRV 191
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
notabilis]
Length = 658
Score = 91.7 bits (226), Expect = 9e-17
Identities = 42/58 (72%), Positives = 51/58 (87%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT+APVDQGT N+LHNFE+PISL+ LQ FGGPQGA AGF+A+KQ+IEA +G +V
Sbjct: 577 KLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRV 634
>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KL+DTSAPVD GT+ NL+HNFE+PISLA LQ FGGPQGA GFLA+KQ+IEA +G +V
Sbjct: 565 KLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRV 622
>gb|EPS59875.1| hypothetical protein M569_14929 [Genlisea aurea]
Length = 643
Score = 90.5 bits (223), Expect = 2e-16
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT+APVDQGT+ NLLH+FE+PISLAALQ GGPQGA AG +A+KQ IEA GVKV
Sbjct: 529 KLVDTNAPVDQGTESNLLHDFELPISLAALQRLGGPQGAQAGLMARKQWIEANYGVKV 586
>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 619
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/58 (72%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KL+DT APVDQGT N LHNFE+PISLA LQ FGGPQGA GF+A+KQ+IEA +GV+V
Sbjct: 538 KLIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRV 595
>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
vesca subsp. vesca]
Length = 657
Score = 90.5 bits (223), Expect = 2e-16
Identities = 42/58 (72%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KL+DT APVDQGT N LHNFE+PISLA LQ FGGPQGA GF+A+KQ+IEA +GV+V
Sbjct: 576 KLIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRV 633
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT+APVDQGT+ N LHNFE+PISL ALQ FGG QGA AGF+A+KQ+IEA IG +V
Sbjct: 579 KLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRV 636
>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
Length = 654
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N+LHNFE+PISLA LQ +GG QGA AGF+A+KQ+IE+ +G +V
Sbjct: 573 KLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRV 630
>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
gi|222848649|gb|EEE86196.1| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 662
Score = 88.6 bits (218), Expect = 8e-16
Identities = 41/58 (70%), Positives = 50/58 (86%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N +H+FE+ ISL ALQ FGGPQGA AGF+A+KQ+IEA +G +V
Sbjct: 581 KLVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRV 638
>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 656
Score = 87.4 bits (215), Expect = 2e-15
Identities = 40/58 (68%), Positives = 50/58 (86%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N+LHNFE+PISLA LQ +GG GA AGF+A+KQ+IE+ +G +V
Sbjct: 575 KLVDTSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRV 632
>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform X2 [Cicer arietinum]
Length = 658
Score = 87.0 bits (214), Expect = 2e-15
Identities = 40/58 (68%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N LHNFE+PISLA L +GG QGA AGF+A+KQ++EA +G +V
Sbjct: 577 KLVDTSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRV 634
>ref|XP_003554309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 646
Score = 87.0 bits (214), Expect = 2e-15
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N LHNF++PISLA LQ FGG +G AGF+AKKQ+IEA +G +V
Sbjct: 565 KLVDTSAPVDQGTESNSLHNFQLPISLAILQKFGGAKGVQAGFMAKKQRIEATVGFQV 622
>ref|XP_003521320.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
max]
Length = 644
Score = 87.0 bits (214), Expect = 2e-15
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQ T+ N+LHNFE+PISLA LQ+FGG +G AG++AKKQ+IEA G KV
Sbjct: 563 KLVDTSAPVDQATESNVLHNFELPISLATLQNFGGAKGVQAGYMAKKQRIEATAGFKV 620
>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
gi|550327599|gb|EEE97240.2| plus-3 domain-containing
family protein [Populus trichocarpa]
Length = 664
Score = 86.7 bits (213), Expect = 3e-15
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDTSAPVDQGT+ N +HNFE+ ISL ALQ F GPQGA AGF+A+KQ+IEA +G +V
Sbjct: 583 KLVDTSAPVDQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQV 640
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/58 (68%), Positives = 49/58 (84%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT APVD+GT+ + LH+FE+PISLA LQ FGGPQGA F+A+KQ+IEA IGV+V
Sbjct: 543 KLVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRV 600
>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
tuberosum]
Length = 652
Score = 84.7 bits (208), Expect = 1e-14
Identities = 39/58 (67%), Positives = 48/58 (82%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT+APVDQGT+ N LH+F++PISLA LQ FGG QG AGF+A+KQ+IEA +G V
Sbjct: 571 KLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSV 628
>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
[Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
PREDICTED: RNA polymerase-associated protein RTF1
homolog isoform 2 [Solanum lycopersicum]
Length = 645
Score = 84.7 bits (208), Expect = 1e-14
Identities = 39/58 (67%), Positives = 48/58 (82%)
Frame = +2
Query: 32 KLVDTSAPVDQGTQYNLLHNFEIPISLAALQHFGGPQGATAGFLAKKQKIEAEIGVKV 205
KLVDT+APVDQGT+ N LH+F++PISLA LQ FGG QG AGF+A+KQ+IEA +G V
Sbjct: 564 KLVDTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSV 621