BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00011431
         (1483 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     516   e-144
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   516   e-144
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   514   e-143
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   506   e-140
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   506   e-140
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   504   e-140
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   504   e-140
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   500   e-139
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   499   e-139
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   499   e-139
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   498   e-138
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  498   e-138
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  497   e-138
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         496   e-138
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       491   e-136
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              480   e-133
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   470   e-130
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]   463   e-128
gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]       462   e-127
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 434   e-119

>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  516 bits (1330), Expect = e-144
 Identities = 245/460 (53%), Positives = 326/460 (70%), Gaps = 5/460 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            + G   IK++Y  D DF+E +  C        ++I +G+LF+A KLC+P  S+  LL+QE
Sbjct: 1143 VTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQE 1202

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG  KT   L +HFYWPKM   V    + CVTC  AKS+ +P GLYTPLP+
Sbjct: 1203 THAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPV 1262

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+ PWEDISMDF+ GLP  K+GRDSIFVVVDRFSKM HFI C  +++AS I+SLFF  +V
Sbjct: 1263 PSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIV 1322

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P++IVSDRD KF+SYFWK+LWAKLGT+LLFST+ HPQTDGQTEV NRTL  LLR 
Sbjct: 1323 RLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRA 1382

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            ++K NL++WEECLP VEFAYNR++HS T   PF+VVYG  PL+P+DL+P P++E+  M+ 
Sbjct: 1383 LIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEA 1442

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             +RA  VK +HE+ ++ +E+RS+  A   NKNR+ V +EPGDLV +HLRK+RFP KR+ K
Sbjct: 1443 SKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSK 1502

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  RGDGPF+VL ++  N Y++ELP+DYG   TFNVADL P+     +D + +R+   QE
Sbjct: 1503 LMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFNVADLTPF--FGLEDSESSRSTPFQE 1560

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSD---GPMTRARVRAME 99
            GE D  +  +      +       D   GP+TR+R + ++
Sbjct: 1561 GEDDEDIPTVHATSSTKQPSSNTKDTIQGPLTRSRAKKLQ 1600


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 681

 Score =  516 bits (1330), Expect = e-144
 Identities = 245/460 (53%), Positives = 326/460 (70%), Gaps = 5/460 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            + G   IK++Y  D DF+E +  C        ++I +G+LF+A KLC+P  S+  LL+QE
Sbjct: 111  VTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQE 170

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG  KT   L +HFYWPKM   V    + CVTC  AKS+ +P GLYTPLP+
Sbjct: 171  THAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPV 230

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+ PWEDISMDF+ GLP  K+GRDSIFVVVDRFSKM HFI C  +++AS I+SLFF  +V
Sbjct: 231  PSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIV 290

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P++IVSDRD KF+SYFWK+LWAKLGT+LLFST+ HPQTDGQTEV NRTL  LLR 
Sbjct: 291  RLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRA 350

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            ++K NL++WEECLP VEFAYNR++HS T   PF+VVYG  PL+P+DL+P P++E+  M+ 
Sbjct: 351  LIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEA 410

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             +RA  VK +HE+ ++ +E+RS+  A   NKNR+ V +EPGDLV +HLRK+RFP KR+ K
Sbjct: 411  SKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSK 470

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  RGDGPF+VL ++  N Y++ELP+DYG   TFNVADL P+     +D + +R+   QE
Sbjct: 471  LMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFNVADLTPF--FGLEDSESSRSTPFQE 528

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSD---GPMTRARVRAME 99
            GE D  +  +      +       D   GP+TR+R + ++
Sbjct: 529  GEDDEDIPTVHATSSTKQPSSNTKDTIQGPLTRSRAKKLQ 568


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
            gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
            Japonica Group]
          Length = 681

 Score =  514 bits (1324), Expect = e-143
 Identities = 244/458 (53%), Positives = 324/458 (70%), Gaps = 5/458 (1%)
 Frame = -3

Query: 1457 GFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQESH 1278
            G   IK++Y  D DF+E +  C        ++I +G+LF+A KLC+P  S+  LL+QE+H
Sbjct: 113  GIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETH 172

Query: 1277 EG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPIPN 1104
             G   GHFG  KT   L +HFYWPKM   V    + CVTC  AKS+ +P GLYTPLP+P+
Sbjct: 173  AGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPS 232

Query: 1103 VPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVVKL 924
             PWEDISMDF+ GLP  K+GRDSIFVVVDRFSKM HFI C  +++AS I+SLFF  +V+L
Sbjct: 233  APWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRL 292

Query: 923  HGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRTML 744
            HG+P++IVSDRD KF+SYFWK+LWAKLGT+LLFST+ HPQTDGQTEV NRTL  LLR ++
Sbjct: 293  HGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALI 352

Query: 743  KSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKGVE 564
            K NL++WEECLP VEFAYNR++HS T   PF+VVYG  PL P+DL+P P++E+  M+  +
Sbjct: 353  KKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLAPIDLLPLPLQERSDMEASK 412

Query: 563  RADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHKLD 384
             A  VK +HE+ ++ +E+RS+  A   NK+R+ V +EPGDLV +HLRK+RFP KR+ KL 
Sbjct: 413  HATYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTFEPGDLVWVHLRKDRFPQKRKSKLM 472

Query: 383  ARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQEGE 204
             RGDGPF+VL ++  N Y++ELP+DYG  PTFNVADL P+     +D + +R+   QEGE
Sbjct: 473  PRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVADLTPF--FGLEDSESSRSTPFQEGE 530

Query: 203  IDSSMTPLMTAQDEEDAMKLRSD---GPMTRARVRAME 99
             D  +  +      +       D   GP+TR+R + ++
Sbjct: 531  DDEDIPTVHATSSTKQPSSNTKDTIQGPLTRSRAKKLQ 568


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  506 bits (1302), Expect = e-140
 Identities = 248/456 (54%), Positives = 315/456 (69%), Gaps = 2/456 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y HD DF +    C +    N F I++G++F+A KLCIP +S+  LL+QE
Sbjct: 1140 IFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQE 1199

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG  KT   L  HF+WP+M   V  F   C TC  AKSR  P GLY PLP+
Sbjct: 1200 AHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPV 1259

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P VPWEDISMDF+ GLP  K+GRDSIFVVVDRFSKM HFI C  T++AS I+ LFF  +V
Sbjct: 1260 PTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIV 1319

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1320 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1379

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP +EFAYNRS+HS T+  PFQ+VYGL P  P+DL+P P  EK +   
Sbjct: 1380 VLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDA 1439

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             +RA+ +  LHE  ++ +ER + +     +K RR + +EPGDLV LHLRKERFP  R+ K
Sbjct: 1440 KQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSK 1499

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL ++  N Y+++LP D+G  PTFNVADL PY  L  +DE E+RT   QE
Sbjct: 1500 LMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPY--LGEEDELESRTTQMQE 1557

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAM 102
            GE D  +  +    D   +  ++ DGP+TRAR R +
Sbjct: 1558 GEDDEDINTI----DTSTSPHIQHDGPITRARARQL 1589



 Score =  241 bits (615), Expect = 6e-61
 Identities = 142/405 (35%), Positives = 220/405 (54%), Gaps = 14/405 (3%)
 Frame = -3

Query: 1445 IKDVYMHDDDFAENFKTCMEIGESNGFYID-NGYLFKARKLCIPKT-SMCRLLIQESHEG 1272
            I++   +D D     K  M+ G++ GF  D +G L+   ++C+P    + +L++QE+HE 
Sbjct: 1966 IREAQKNDPDMRGLLKN-MKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHES 2024

Query: 1271 RG--HFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSS-PQGLYTPLPIPNV 1101
                H G  K    LKE ++W  M   +  F   C  C   K+    P GL  PL +P  
Sbjct: 2025 PYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEW 2084

Query: 1100 PWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVVKLH 921
             W++I MDFITGLP  + G DSI+VVVDR +K+  FI  KTT   ++++ L+F  +V LH
Sbjct: 2085 KWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLH 2144

Query: 920  GIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRTMLK 741
            G+P+ IVSDR+++F S+FWK L  +LGT+L FST+YHPQTDGQTE  N+ L  +L   + 
Sbjct: 2145 GVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVL 2204

Query: 740  SNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPL--DLIPRPMKEKESMKGV 567
               + W++ LP+ EF+YN S  ++ Q  P++ +YG    TPL  D +      +  + G 
Sbjct: 2205 DFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQV-----GESQVFGT 2259

Query: 566  ERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHKL 387
            +   + +A    +   L+    +  +  +  RR + +   D V L +     PL+  H+ 
Sbjct: 2260 DILREAEAKVRTIWDNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVT----PLRGVHRF 2315

Query: 386  DARGD------GPFQVLKRLGANFYRLELPDDYG-AHPTFNVADL 273
              +G       GPF+++ R G   Y+LELP   G  H  F+V+ L
Sbjct: 2316 QTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQL 2360


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  506 bits (1302), Expect = e-140
 Identities = 245/456 (53%), Positives = 315/456 (69%), Gaps = 2/456 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IK+ Y HDDDF +    C E    N F + NG++F+A KLCIP +S+  LL+QE
Sbjct: 1064 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQE 1123

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT   L +H +WPKM   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1124 AHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1183

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  +V
Sbjct: 1184 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIV 1243

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRT+  +LR 
Sbjct: 1244 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTVSTMLRA 1303

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP VEFAYNRS HS T++ PF++VYGL P  P+DL+P P  E+ +   
Sbjct: 1304 VLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDA 1363

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
              RA+ +  LHE  ++ +ER + +     +K ++ VA+EPGDLV LHLRK+RFP  R+ K
Sbjct: 1364 KYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSK 1423

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPFQVL+++  N Y+LELP D+G  PTFN+ADL PY  L  +DE E+RT   QE
Sbjct: 1424 LPPRADGPFQVLQKINDNAYKLELPADFGVSPTFNIADLKPY--LGEEDELESRTTQMQE 1481

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAM 102
            GE D  +         +    +   GPMTRAR R +
Sbjct: 1482 GEDDEDI------PSNDTTTPIAQQGPMTRARAREL 1511


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  504 bits (1298), Expect = e-140
 Identities = 244/456 (53%), Positives = 314/456 (68%), Gaps = 2/456 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IK+ Y HDDDF      C E    N F + NG++F+A KLCIP +S+  LL+QE
Sbjct: 1168 IFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 1227

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT   L +HF+WPKM   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1287

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  +V
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIV 1347

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTK LFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1348 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRA 1407

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP VEFAYNRS HS T++ PF++VYGL P  P+DL+P P  E+ +   
Sbjct: 1408 VLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDA 1467

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
              RA+ +  LHE  ++ +ER + +     +K ++ VA+EPGDLV LHLRK+RFP  R+ K
Sbjct: 1468 KYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSK 1527

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL+++  N Y+LELP D+G  PTFN+ADL PY  L  +DE E+RT   QE
Sbjct: 1528 LLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY--LGEEDELESRTTQMQE 1585

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAM 102
            GE D  +         + +  +   GPMTRAR   +
Sbjct: 1586 GEDDEDI------PSNDTSTPIAQQGPMTRARAHEL 1615


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  504 bits (1297), Expect = e-140
 Identities = 245/461 (53%), Positives = 315/461 (68%), Gaps = 2/461 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IK+ Y HDDDF +    C E    N F + NG++F+A KLCIP +S+  LL+QE
Sbjct: 1168 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 1227

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT   L +HF+WPKM   V  F   C TC  AK R +P GLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPV 1287

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  +V
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIV 1347

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1348 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1407

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP VEFAYNRS HS T++ PF++VYGL P  P+DL+P P  E+ +   
Sbjct: 1408 VLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDA 1467

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
               A+ +  LHE  ++ +ER + +     +K ++ VA+EPGDLV LHLRK+RFP  R+ K
Sbjct: 1468 KYHAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSK 1527

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL+++  N Y+LELP D+G  PTFN+ADL PY  L  +DE E+RT   QE
Sbjct: 1528 LLPRADGPFKVLQKINDNTYKLELPADFGVSPTFNIADLKPY--LGEEDELESRTTQMQE 1585

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAMERATQ 87
            GE D  +         +    +   GPMTRAR R +    Q
Sbjct: 1586 GEDDEDI------PSNDTTTPIAQQGPMTRARARELNYQVQ 1620


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  500 bits (1287), Expect = e-139
 Identities = 252/477 (52%), Positives = 333/477 (69%), Gaps = 8/477 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            +LGF  IK +Y +D DF E F  C ++G    F + + +LFK  KLC+P  S+  L ++E
Sbjct: 1094 LLGFDQIKFLYANDSDFGEIFAEC-KLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVRE 1152

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+PKTL  L EHFYWP M   V   C  C+ C  AKSR+ P GLYTPLP+
Sbjct: 1153 AHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPV 1212

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
             N PW DISMDFI GLP  K G+DSIFVVVDRFSKM  FI CK TN+AS ++ LF + VV
Sbjct: 1213 SNFPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKEVV 1272

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            KLHGIPR+IVSDRDAKF+S+FW+ LW KLGTKLLFSTS HPQTDGQTEV NRTLG +LR 
Sbjct: 1273 KLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTLGNMLRA 1332

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK  L  WE+ LP VEFAYNR+ HS+T +TPF+VVYG NPLTPLDL+P P  +  ++ G
Sbjct: 1333 ILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDG 1392

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ++AD +K +HE+ R  +E++++++A +RNK R+ V ++PGDLV +H+RKERFP KR+ K
Sbjct: 1393 KKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTK 1452

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            LD RG GP++VL+R+G N Y+L+LP ++    TFNV+DL+ Y     D + ++RT   QE
Sbjct: 1453 LDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVSDLSHY-----DADLDSRTNSLQE 1507

Query: 209  ---GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAME---RATQALVSRAYAGD 57
                 I  S TPL   +D++DA++     P+TR++ +         Q+L+ R   G+
Sbjct: 1508 EGNDSIQGSSTPL---KDKDDALE-TPRRPITRSQTKEFNDKLNGLQSLIQRFLIGE 1560


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  499 bits (1286), Expect = e-139
 Identities = 252/477 (52%), Positives = 333/477 (69%), Gaps = 8/477 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            +LGF  IK +Y +D DF E F  C ++G    F + + +LFK  KLC+P  S+  L ++E
Sbjct: 1094 LLGFDQIKFLYANDSDFGEIFAEC-KLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVRE 1152

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+PKTL  L EHFYWP M   V   C  C+ C  AKSR+ P GLYTPLP+
Sbjct: 1153 AHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPV 1212

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
             N PW DISMDFI GLP  K G+DSIFVVVDRFSKM  FI CK TN+AS ++ LF + VV
Sbjct: 1213 SNSPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKEVV 1272

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            KLHGIPR+IVSDRDAKF+S+FW+ LW KLGTKLLFSTS HPQTDGQTEV NRTLG +LR 
Sbjct: 1273 KLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTLGNMLRA 1332

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK  L  WE+ LP VEFAYNR+ HS+T +TPF+VVYG NPLTPLDL+P P  +  ++ G
Sbjct: 1333 ILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTNDFANLDG 1392

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ++AD +K +HE+ R  +E++++++A +RNK R+ V ++PGDLV +H+RKERFP KR+ K
Sbjct: 1393 KKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFPSKRKTK 1452

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            LD RG GP++VL+R+G N Y+L+LP ++    TFNV+DL+ Y     D + ++RT   QE
Sbjct: 1453 LDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVSDLSHY-----DADLDSRTNSLQE 1507

Query: 209  ---GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAME---RATQALVSRAYAGD 57
                 I  S TPL   +D++DA++     P+TR++ +         Q+L+ R   G+
Sbjct: 1508 EGNDSIQGSSTPL---KDKDDALE-TPRRPITRSQTKEFNDKLNGLQSLIQRFLIGE 1560


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  499 bits (1286), Expect = e-139
 Identities = 250/476 (52%), Positives = 320/476 (67%), Gaps = 6/476 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y HD DF +    C +    N F I++G++F+A KLCIP +S+  LL+QE
Sbjct: 1119 IFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQE 1178

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG  KT   L  HF+WP+M   V  F   C TC  AKSR  P GLY PLP+
Sbjct: 1179 AHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPV 1238

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P VPWEDISMDF+ GLP  K+GRDSIFVVVDRFSKM HFI C  T++AS I+ LFF  +V
Sbjct: 1239 PTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIV 1298

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQ EV NRTL  +LR 
Sbjct: 1299 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRA 1358

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP +EFA NRS+HS T+  PFQ+VY L P  P+DL+P P  EK +   
Sbjct: 1359 VLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDA 1418

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             +RA+ +  LHE  ++ +ER + +     +K RR + +EPGDLV LHLRKERFP  R+ K
Sbjct: 1419 KQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSK 1478

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL ++  N Y+++LP D+G  PTFNVADL PY  L  +DE E+RT   QE
Sbjct: 1479 LMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPY--LGEEDELESRTTQMQE 1536

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAMERATQALV----SRAYAGDA 54
            GE D ++  +    D   +  ++ DGP+TRAR R +     + +    S  Y GDA
Sbjct: 1537 GEDDENINTI----DTSTSPHVQHDGPITRARARQLNYQVSSFLSSYSSSLYPGDA 1588


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  498 bits (1283), Expect = e-138
 Identities = 246/489 (50%), Positives = 326/489 (66%), Gaps = 4/489 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y+HD +F +  + C E    N F +++G++F+A KLCIP +S+  LL+QE
Sbjct: 1184 IFGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQE 1243

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT   L  HF+WPKM   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1244 AHGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPV 1303

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A  ++ LFF  ++
Sbjct: 1304 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFREII 1363

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW+ LWAKLG KLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1364 RLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1423

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK+N + WEECLP +EFAYNRS+HS T+  PF++VYG  P  P+DL+P P  EK +   
Sbjct: 1424 VLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDA 1483

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ER++ +  +HE  ++ +ER + +    R+K R+ V + PGDLV LHLRK+RFP  R+ K
Sbjct: 1484 KERSELILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSK 1543

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL+++  N Y+LELP D+G  PTFN+ADL PY  L  +DE  +RT   QE
Sbjct: 1544 LMPRADGPFKVLEKINDNAYKLELPADFGVSPTFNIADLKPY--LGEEDELPSRTTSFQE 1601

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAMERATQALVSRAYAGDATSSSPK-- 36
            GE D  +  ++T      A  +   GP+TRAR R +     + +            PK  
Sbjct: 1602 GEDDEDINTIVT----PTAPTVTYTGPITRARARQLNYQVLSFLGNDSNVHEIMMLPKLD 1657

Query: 35   WVLLVTYEG 9
             ++L+T EG
Sbjct: 1658 TIVLLTNEG 1666


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  498 bits (1283), Expect = e-138
 Identities = 243/456 (53%), Positives = 314/456 (68%), Gaps = 2/456 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y+HD DF +  + C E    N F I+NG++F+A KLCIP +S+  LL+QE
Sbjct: 1196 IFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQE 1255

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ K    L  HF+WP+M   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1256 AHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1315

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  ++
Sbjct: 1316 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREII 1375

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRDAKF+S+FW+ LWAKLGTKLLFST+ HPQTDGQTEV NR+L  +LR 
Sbjct: 1376 RLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRA 1435

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK+NL+ WEECLP +EFAYNRS+HS T+  PF++VYG  P  P+DL+P P  EK +   
Sbjct: 1436 VLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDA 1495

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ERA+ +  +HE  ++ +ER + +     +K R+ V + PGDLV LHLRK+RFP  R+ K
Sbjct: 1496 KERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSK 1555

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R  GPF+VL+++  N YRLELP D+G  PTFN+ADL PY  L  +DE  +RT   QE
Sbjct: 1556 LMPRAGGPFKVLEKINDNAYRLELPXDFGVSPTFNIADLKPY--LGEEDELPSRTTSVQE 1613

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAM 102
            GE D  +  + T      A      GP+TRAR R +
Sbjct: 1614 GEDDEDINTIAT----PTAPAAIHTGPVTRARARQL 1645


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  497 bits (1280), Expect = e-138
 Identities = 242/456 (53%), Positives = 314/456 (68%), Gaps = 2/456 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y+HD DF +  + C E    N F I+NG++F+A KLCIP +S+  LL+QE
Sbjct: 1199 IFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQE 1258

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ K    L  HF+WP+M   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1259 AHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1318

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  ++
Sbjct: 1319 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREII 1378

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRDAKF+S+FW+ LWAKLGTKLLFST+ HPQTDGQTEV NR+L  +LR 
Sbjct: 1379 RLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRA 1438

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK+N++ WEECLP +EFAYNRS+HS T+  PF++VYG  P  P+DL+P P  EK +   
Sbjct: 1439 VLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDA 1498

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ERA+ +  +HE  ++ +ER + +     +K R+ V + PGDLV LHLRK+RFP  R+ K
Sbjct: 1499 KERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSK 1558

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R  GPF+VL+++  N YRLELP D+G  PTFN+ADL PY  L  +DE  +RT   QE
Sbjct: 1559 LMPRAGGPFKVLEKINDNAYRLELPADFGVSPTFNIADLKPY--LGEEDELPSRTTSVQE 1616

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAM 102
            GE D  +  + T      A      GP+TRAR R +
Sbjct: 1617 GEDDEDINTIAT----PTAPAAIHTGPVTRARARQL 1648


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  496 bits (1278), Expect = e-138
 Identities = 243/465 (52%), Positives = 316/465 (67%), Gaps = 2/465 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IKD Y+HD DF +    C +    N + + +G++F+A KLCIP +S+  LL+QE
Sbjct: 1143 IFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQE 1202

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG  KT   L  HF+WPKM   V      C TC  AKSR +P GLY PLP+
Sbjct: 1203 AHGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPV 1262

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+ PWEDISMDF+ GLP  +KGRDS+FVVVDRFSKM HFI C  T++A+ I+ LFF  +V
Sbjct: 1263 PSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIV 1322

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRDAKF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1323 RLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1382

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WE+CLP +EFAYNRS+HS T+  PFQ+VYGL P  P+DL+P P  EK +   
Sbjct: 1383 VLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDA 1442

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
              RA+ +  LHE  ++ +ER + +     +K R+ + +EPGDLV LHLRKERFP  R+ K
Sbjct: 1443 TRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSK 1502

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL+++  N YRL+LP D+G  PTFN+ADL PY  L  + E E+RT   QE
Sbjct: 1503 LLPRADGPFKVLEKINDNAYRLDLPADFGVSPTFNIADLKPY--LGEEVELESRTTQMQE 1560

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAMERATQALVS 75
            GE D      +   D    +++   GP+TRAR R +      L+S
Sbjct: 1561 GENDED----IHTTDASIPIQVPISGPITRARARQLNHQVITLLS 1601


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  491 bits (1265), Expect = e-136
 Identities = 235/422 (55%), Positives = 301/422 (71%), Gaps = 2/422 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IK+ Y HDDDF +    C E    N F + NG++F+A KLCIP +S+  LL+QE
Sbjct: 1168 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQE 1227

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ K    L +HF+WPK    V  F   C TC  AKSR +P GLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1287

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  +V
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIV 1347

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 1348 RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 1407

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP VEFAYNRS HS T++ PF++VYGL P  P+DL+P P  E+ +   
Sbjct: 1408 VLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDA 1467

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
              RA+ +  LHE  ++ +ER + +     +K ++ VA+EPGDLV LHLRK+RFP  R+ K
Sbjct: 1468 KYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSK 1527

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  R DGPF+VL+++  N Y+LELP D+G  PTFN+ADL PY  L  +DE E+RT   QE
Sbjct: 1528 LLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY--LGEEDELESRTTQMQE 1585

Query: 209  GE 204
            GE
Sbjct: 1586 GE 1587


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  480 bits (1236), Expect = e-133
 Identities = 231/436 (52%), Positives = 309/436 (70%), Gaps = 2/436 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            +LGF  IK +Y +D DF + + +C +      +Y  +G+LF   +LCIP +S+  L I+E
Sbjct: 1332 LLGFEHIKSLYANDSDFEKIYSSCEKFAFGK-YYRHDGFLFYDNRLCIPNSSLRELFIRE 1390

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT+  +++HF+WP M   V   C+ C TC  AK++S P GLYTPLPI
Sbjct: 1391 AHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPI 1450

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+ PW DISMDF+ GLP  + G+DSIFVVVDRFSKM HFI C  T++A  I++LFF  VV
Sbjct: 1451 PSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVV 1510

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P++IVSDRD KF+SYFWK+LW+KLGTKLLFST+ HPQTDGQTEV NRTL  LLR 
Sbjct: 1511 RLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRA 1570

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            ++K NL+ WE+CLP VEFAYN SMHSA++ +PFQ+VYG NP TPLDL+P P+ E+ S+ G
Sbjct: 1571 LIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSERVSLDG 1630

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
             ++A+ V+ +HE+ ++ +E +++Q A   NK+R+ V +  GDLV +HLRKERFP +R+ K
Sbjct: 1631 KKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPKERKSK 1690

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L +R DGPF+VLKR+  N Y L+L   Y    +FNVADL P+      D  + R+   Q 
Sbjct: 1691 LMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVADLFPF----IADNTDLRSNPFQL 1746

Query: 209  GEIDSSMTPLMTAQDE 162
            GE D  MT L    DE
Sbjct: 1747 GEDDVIMTSLDHGADE 1762


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  470 bits (1210), Expect = e-130
 Identities = 220/393 (55%), Positives = 283/393 (72%), Gaps = 2/393 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            I G   IK+ Y HDDDF +    CME    N F + NG++F+A KLCIP +S+  LL+QE
Sbjct: 481  IFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 540

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +H G   GHFG+ KT   L +HF+WPKM   V  F   C TC  AKSR +P GLY PLP+
Sbjct: 541  AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 600

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+VPWEDISMDF+ GLP  KKGRDSIFVVVDRFSKM HFI C  +++A+ ++ LFF  +V
Sbjct: 601  PSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIV 660

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHG+P +IVSDRD KF+S+FW++LWAKLGTKLLFST+ HPQTDGQTEV NRTL  +LR 
Sbjct: 661  RLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRA 720

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +LK N++ WEECLP VEFAYN S HS T++ PF++VYGL P  P+DL+P P  E+ +   
Sbjct: 721  VLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDA 780

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
              RA+ +  LHE  ++ +ER + +     +K ++ VA+EPGDLV LHLRK+RFP  R+ K
Sbjct: 781  KHRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSK 840

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPT 291
            L  R DGPF+VL+++  N Y+LELP D+G  PT
Sbjct: 841  LQPRADGPFKVLQKINDNAYKLELPADFGVSPT 873


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score =  463 bits (1191), Expect = e-128
 Identities = 234/468 (50%), Positives = 312/468 (66%), Gaps = 2/468 (0%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNGFYIDNGYLFKARKLCIPKTSMCRLLIQE 1284
            +LGF  +K++Y +DDDFA  +  C ++     FY  +GYLF+  +LC+P +SM  LL++E
Sbjct: 733  LLGFEYVKELYANDDDFASVYGACEKVAFGK-FYRLDGYLFRENRLCVPNSSMRELLVRE 791

Query: 1283 SHEG--RGHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPLPI 1110
            +HEG   GHFG+ KTL  L EH +WPKM   V   C  C+T  HAKS+  P GLYT L +
Sbjct: 792  AHEGGLMGHFGVRKTLDVLHEHIFWPKMKRDVERACARCITYRHAKSKVLPHGLYTTLLV 851

Query: 1109 PNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEHVV 930
            P+ PW DISMDF+ GL   + GRDSIFVVVDRFSKM HFI+C  T++A+ I++LFF  +V
Sbjct: 852  PSAPWVDISMDFVLGLLRSRNGRDSIFVVVDRFSKMTHFISCHKTDDATHIANLFFRKIV 911

Query: 929  KLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALLRT 750
            +LHGIPRSIVSDRD KF+S FWK LW KLGTKLLFST+ HPQTDGQ EV NRTL  LLRT
Sbjct: 912  RLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEVVNRTLSTLLRT 971

Query: 749  MLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESMKG 570
            +++ NL+ WE+CLPF EFAYNRS+HS T  +PF++VYG NPLTPLDL+P P+ E  S+  
Sbjct: 972  IIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYGFNPLTPLDLLPLPVNEMTSLD- 1030

Query: 569  VERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRRHK 390
                              E+++EQ  T+ NK RR V +E GD V +H+RKERFP +R+ K
Sbjct: 1031 ------------------EKKNEQYVTKANKGRRQVLFESGDWVWVHMRKERFPTRRQSK 1072

Query: 389  LDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDEDEARTLHSQE 210
            L  RGDGPFQVL+R+  N Y+L+L  +Y    TF V+DL+P     F+  D++RT   +E
Sbjct: 1073 LHPRGDGPFQVLERINDNAYKLDLLGEYNISATFKVSDLSP-----FNVGDDSRTNPFEE 1127

Query: 209  GEIDSSMTPLMTAQDEEDAMKLRSDGPMTRARVRAMERATQALVSRAY 66
               D +       Q  +D + +  + P+T+AR + ++ A   L+   +
Sbjct: 1128 RGNDENQ------QAFKDPLHVLVE-PITKARSKKIKEALNGLIQEIW 1168


>gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
          Length = 1096

 Score =  462 bits (1188), Expect = e-127
 Identities = 236/445 (53%), Positives = 311/445 (69%), Gaps = 8/445 (1%)
 Frame = -3

Query: 1367 FYIDNGYLFKARKLCIPKTSMCRLLIQESHEG--RGHFGIPKTLAALKEHFYWPKMLHHV 1194
            F + + +LFK  KLC+P  S+  L ++E+H G   GHFG+PKTL  L EHFYWP M   V
Sbjct: 643  FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDV 702

Query: 1193 THFCKACVTCVHAKSRSSPQGLYTPLPIPNVPWEDISMDFITGLPMYKKGRDSIFVVVDR 1014
                        AKSR+ P GLYTPLP+ N PW DISMDFI GLP  K G+DSIFVVVDR
Sbjct: 703  EK----------AKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDR 752

Query: 1013 FSKMDHFITCKTTNNASEISSLFFEHVVKLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTK 834
            FSKM  FI CK TN+AS ++ LF + VVKLHGIPR+IVSDRDAKF+S+FW+ LW KLGTK
Sbjct: 753  FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTK 812

Query: 833  LLFSTSYHPQTDGQTEVTNRTLGALLRTMLKSNLRKWEECLPFVEFAYNRSMHSATQQTP 654
            LLFSTS HPQTDGQTEV NRTLG +LR +LK  L  WE+ LP VEFAYNR+ HS+T +TP
Sbjct: 813  LLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTP 872

Query: 653  FQVVYGLNPLTPLDLIPRPMKEKESMKGVERADQVKALHERMRQQLERRSEQLATQRNKN 474
            F+VVYG NPLTPLDL+P P  +  ++ G ++AD +K +HE+ R  +E++++++A +RNK 
Sbjct: 873  FEVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKG 932

Query: 473  RRPVAYEPGDLVCLHLRKERFPLKRRHKLDARGDGPFQVLKRLGANFYRLELPDDYGAHP 294
            R+ V ++PGDLV +H+RKERFP KR+ KLD RG GP++VL+R+G N Y+L+LP ++    
Sbjct: 933  RKYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSA 992

Query: 293  TFNVADLAPYTPLAFDDEDEARTLHSQE---GEIDSSMTPLMTAQDEEDAMKLRSDGPMT 123
            TFNV+DL+ Y     D + ++RT   QE     I  S TPL   +D++DA++     P+T
Sbjct: 993  TFNVSDLSHY-----DADLDSRTNSLQEEGNDSIQGSSTPL---KDKDDALE-TPRRPIT 1043

Query: 122  RARVRAME---RATQALVSRAYAGD 57
            R++ +         Q+L+ R   G+
Sbjct: 1044 RSQTKEFNDKLNGLQSLIQRFLIGE 1068


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  434 bits (1117), Expect = e-119
 Identities = 213/428 (49%), Positives = 297/428 (69%), Gaps = 5/428 (1%)
 Frame = -3

Query: 1463 ILGFSLIKDVYMHDDDFAENFKTCMEIGESNG--FYIDNGYLFKARKLCIPKTSMCRLLI 1290
            +LGF  +K++Y  D DF+E + T  E  ++ G  + +  G+LF+  KLC+P+ S   LLI
Sbjct: 1037 VLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLI 1096

Query: 1289 QESHEGR--GHFGIPKTLAALKEHFYWPKMLHHVTHFCKACVTCVHAKSRSSPQGLYTPL 1116
            +E H G   GHFG+ KTL  L++ FYWP+M+  V    + C  C  +KS   P G YTPL
Sbjct: 1097 REVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSFQP-GPYTPL 1155

Query: 1115 PIPNVPWEDISMDFITGLPMYKKGRDSIFVVVDRFSKMDHFITCKTTNNASEISSLFFEH 936
            P+P+ PWED+SMDFI  LP  ++G+DS+ VVVDRFSKM HF+ CK T +A  ++ LF + 
Sbjct: 1156 PVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKE 1215

Query: 935  VVKLHGIPRSIVSDRDAKFVSYFWKSLWAKLGTKLLFSTSYHPQTDGQTEVTNRTLGALL 756
            +V+LHG+P++IVSDRD KF+ YFWK+LW  L TKLLFSTS+HPQTDGQTEVTNRTLG +L
Sbjct: 1216 IVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRIL 1275

Query: 755  RTMLKSNLRKWEECLPFVEFAYNRSMHSATQQTPFQVVYGLNPLTPLDLIPRPMKEKESM 576
            R ++  +L+ W+  L   EFA+NR+  +AT  +PF+VVYG+NPL PLDL   P KE  ++
Sbjct: 1276 RCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP-KENINL 1334

Query: 575  KGVERADQVKALHERMRQQLERRSEQLATQRNKNRRPVAYEPGDLVCLHLRKERFPLKRR 396
              ++RA+Q+  LHE +++Q+ER +EQ        +    +EPGDLV +HLRKERFP KR+
Sbjct: 1335 DAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKRK 1394

Query: 395  HKLDARGDGPFQVLKRLGANFYRLELPDDYGAHPTFNVADLAPYTPLAFDDE-DEARTLH 219
            +KL  R DGPF+V++++G + Y+++LP DYG H TFNV DL+PY   + D+E    RT  
Sbjct: 1395 NKLMPRSDGPFEVVEKIGPSAYKIDLPGDYGVHGTFNVGDLSPYYEDSGDEEVTGLRTSP 1454

Query: 218  SQEGEIDS 195
             Q G +D+
Sbjct: 1455 VQPGGVDA 1462