BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00010494
         (3296 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   428   e-117
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          423   e-115
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]   422   e-115
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   420   e-114
gb|AAT38766.2| Polyprotein, putative [Solanum demissum]               365   5e-98
emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]   346   3e-92
emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera]   337   2e-89
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...   312   7e-82
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...   306   3e-80
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   306   5e-80
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     305   9e-80
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc...   304   1e-79
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc...   303   3e-79
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   303   3e-79
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   303   3e-79
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...   302   6e-79
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...   301   1e-78
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               301   1e-78
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...   301   2e-78
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]           301   2e-78

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  428 bits (1101), Expect = e-117
 Identities = 215/371 (57%), Positives = 276/371 (74%), Gaps = 3/371 (0%)
 Frame = -3

Query: 1224 YKADDCRSKADPPKDKGKSQVTL--IEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATR 1051
            +K+ DCR    P K+K K    +  I   + D DL AVVSEVN+VG NP EWW DTGATR
Sbjct: 288  HKSVDCRL---PKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATR 344

Query: 1050 HICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRK 871
            H+CSD+ MF+T+   ++ E +FMGNS+TS++ G GKV+           TNV++VP+IRK
Sbjct: 345  HVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRK 404

Query: 870  NLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMN 691
            NL+S +LL+ +GF + F S+K+VLSK+G+Y+G GY+ DG+ K NVM +I ++      MN
Sbjct: 405  NLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIKSN------MN 458

Query: 690  KNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCK-TSKDKCEVCVHAKLTKTPS 514
            K +   Y++ES N+WH RLGHVN  +++RL+N+N IP  +  S  KCE CV AKLT++  
Sbjct: 459  KASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSF 518

Query: 513  PRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKE 334
              VER TEPL LIH+D+CDLK+VQTRGG KYF+TF+DD TKYCYVYLL+SKDEA+EKF  
Sbjct: 519  QSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVL 578

Query: 333  YKLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTL 154
            YK EVENQL+K IK++RSDRGGEY+ PF     +HGIIH+TTAPYSP+SNGVAERKNRTL
Sbjct: 579  YKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNGVAERKNRTL 638

Query: 153  KEMMNAMLQES 121
            KEMMNAML  S
Sbjct: 639  KEMMNAMLISS 649



 Score =  111 bits (278), Expect = 2e-21
 Identities = 51/110 (46%), Positives = 72/110 (65%)
 Frame = -3

Query: 1527 MPGAVSASLMPEKFNGTGFKRWKKKMFSFLTSLKLEKYLNEDKPMLSPHNTDPYLLDSIN 1348
            +P +VS    PEKF+G  FKRW++KM  +LT+L L ++L ED P L     D  ++ +I+
Sbjct: 31   VPISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAID 90

Query: 1347 AWTHGDFLCKGWIQNRLIDPLCKVYSKIKTSKALWVALERKYKADDCRSK 1198
            AW H DFLC+ ++ N L D L  VYS  KT+K LW +L+RKYK +D  +K
Sbjct: 91   AWKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAK 140


>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  423 bits (1088), Expect = e-115
 Identities = 213/370 (57%), Positives = 269/370 (72%), Gaps = 1/370 (0%)
 Frame = -3

Query: 1224 YKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRHI 1045
            +KA DCR    P K +  + V  I   ++D +L AVV EVNMVG NP EWW DTGATRH+
Sbjct: 279  HKASDCRL---PKKKREANVVENITQHVSDINLSAVVLEVNMVGSNPREWWIDTGATRHV 335

Query: 1044 CSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRKNL 865
            CSD+G+FT++  + + E LFMGNS+TS+++G GKV             NV++VP+IRKNL
Sbjct: 336  CSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNNVLYVPEIRKNL 395

Query: 864  ISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMNKN 685
            +S +LL+K+GF + F SD +VLSKNG+Y+G GYV DGL K NVM + P         NK 
Sbjct: 396  VSGSLLNKHGFRMVFESDMVVLSKNGMYVGKGYVNDGLFKLNVMTLKPTI------NNKA 449

Query: 684  NHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTS-KDKCEVCVHAKLTKTPSPR 508
               AY++ES NIWH RLGHVN  S+++L+NM  IP  +   K KC+ CV AKLT++    
Sbjct: 450  TSSAYLLESSNIWHGRLGHVNFNSLRKLINMKHIPNFQIDLKHKCKTCVEAKLTRSSFQI 509

Query: 507  VERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKEYK 328
            ++R +EPL LIH+D+CD K +QTRGG KYF+TFIDDCTKYCYVYLL+SKDEAL+KF  YK
Sbjct: 510  IQRNSEPLDLIHSDICDFKSIQTRGGNKYFITFIDDCTKYCYVYLLKSKDEALDKFILYK 569

Query: 327  LEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTLKE 148
             EVENQL++ IK +RSDRGGEY  PF +  ++ GIIHQ TAPYSP+SNG+AERKNRTLKE
Sbjct: 570  NEVENQLNRKIKELRSDRGGEYVVPFMSLCEQSGIIHQVTAPYSPQSNGIAERKNRTLKE 629

Query: 147  MMNAMLQESG 118
            MMNAML  SG
Sbjct: 630  MMNAMLISSG 639



 Score =  108 bits (270), Expect = 2e-20
 Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 7/194 (3%)
 Frame = -3

Query: 1539 ATVHMPGAVSASLMPEKFNGTGFKRWKKKMFSFLTSLKLEKYLNEDKPMLSPHNTDPYLL 1360
            A+V +P  V+ +  PEKFNG  FKRW++KMF +LT+L L ++L +D P      TD  + 
Sbjct: 30   ASVAIP--VNHAERPEKFNGQNFKRWQQKMFFYLTTLNLARFLTKDAPKPKEGETDIQVA 87

Query: 1359 DSINAWTHGDFLCKGWIQNRLIDPLCKVYSKIKTSKALWVALERKYKADDCRSK------ 1198
             +I+AW H DFLCK ++ N L D L  VY   KT+K LW +L+RKYK +D  +K      
Sbjct: 88   SAIDAWHHSDFLCKNYVMNGLSDSLYNVYIGKKTAKELWESLDRKYKTEDAGTKKFVVGR 147

Query: 1197 -ADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRHICSDRGMFT 1021
              D      K+ ++ ++      +L  ++SE+   G +  E +        +      F 
Sbjct: 148  FLDFKMVDSKTVISQVQ------ELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFK 201

Query: 1020 TYLKSKSDELLFMG 979
            +YLK K  E+   G
Sbjct: 202  SYLKHKQKEMNIEG 215


>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
          Length = 1316

 Score =  422 bits (1084), Expect = e-115
 Identities = 205/325 (63%), Positives = 252/325 (77%), Gaps = 1/325 (0%)
 Frame = -3

Query: 1089 NPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXX 910
            N  EWW DTGATRHICS++ MF+TY   + +E LFMGNSS+SK++G GKV+         
Sbjct: 459  NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 909  XXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMP 730
               +V+HVPDI KNL+S +LLSKNGF++ FVSDK VL+KN +++G GY+ DGL K NVM 
Sbjct: 519  TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMT 578

Query: 729  VIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSKD-KC 553
            V+P SI    + NK +  AY+++S NIWH RLGHVN  ++ RL++++ +PK     + KC
Sbjct: 579  VVPKSI----NNNKIDSSAYLLKSSNIWHGRLGHVNYDTLCRLIHLDYLPKFNIDPNHKC 634

Query: 552  EVCVHAKLTKTPSPRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYL 373
            E CV +KLTK P   VER+TEPL L H+D+CDLK+VQTRGGKKYF+TFIDDCT+YCYVYL
Sbjct: 635  ETCVESKLTKVPFHSVERSTEPLDLFHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYL 694

Query: 372  LRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSP 193
            L+SKDEA+E FK YK+EVENQLSK IK IRSDRGGEY+ PF  F  EHGIIHQT APYSP
Sbjct: 695  LKSKDEAIEMFKHYKIEVENQLSKKIKAIRSDRGGEYESPFEEFCLEHGIIHQTIAPYSP 754

Query: 192  ESNGVAERKNRTLKEMMNAMLQESG 118
            +SNG+AERKNRTLKEMMNAML  SG
Sbjct: 755  QSNGMAERKNRTLKEMMNAMLLSSG 779



 Score = 99.4 bits (246), Expect = 9e-18
 Identities = 44/100 (44%), Positives = 67/100 (67%)
 Frame = -3

Query: 1497 PEKFNGTGFKRWKKKMFSFLTSLKLEKYLNEDKPMLSPHNTDPYLLDSINAWTHGDFLCK 1318
            PEKFNG  FKRW++KM  +LT+L L ++L+E+ P+L    T+   +  ++AW H DFLC+
Sbjct: 211  PEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCR 270

Query: 1317 GWIQNRLIDPLCKVYSKIKTSKALWVALERKYKADDCRSK 1198
             ++ N L + L  VY  +KT+K LW +L++KYK +D   K
Sbjct: 271  NYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIK 310



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
 Frame = -3

Query: 1563 PNGFQSVQATVHMPGAVSASLM-------PEKFNGTGFKRWKKKMFSFLTSLKLEKYLNE 1405
            PN F ++     M  + +   M       PEKFNG  FKRW++KM  +LT+L L ++L+E
Sbjct: 1227 PNRFMTIPNRNQMASSSNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHE 1286

Query: 1404 DKPMLSPHNTDPYLLDSINAWTHGDFLCK 1318
            + P+L    T+   + +++AW H DFLC+
Sbjct: 1287 ECPILEEGETNKEKVAAVDAWKHSDFLCR 1315


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  420 bits (1080), Expect = e-114
 Identities = 210/368 (57%), Positives = 272/368 (73%), Gaps = 3/368 (0%)
 Frame = -3

Query: 1224 YKADDCRSKADPPKDKGKSQVTL--IEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATR 1051
            +K+ DCR    P K+K K    +  I   ++D DL  VVSEVN+VG NP EWW DTGATR
Sbjct: 288  HKSVDCRL---PKKNKPKEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATR 344

Query: 1050 HICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRK 871
            H+CSD+ MF+T+   ++ E +FMGNS+TS++ G GKV+           TNV++VP+IRK
Sbjct: 345  HVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRK 404

Query: 870  NLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMN 691
            NL+  +LL+ +GF + F S+K+VLSK+G+Y+G GY+ DG+ K NVM +I ++      MN
Sbjct: 405  NLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIKSN------MN 458

Query: 690  KNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCK-TSKDKCEVCVHAKLTKTPS 514
            K +   Y++ES N+WH RL HVN  +++RL+N+N IP  +  S  KCE CV AKLT++  
Sbjct: 459  KASTSTYMLESSNLWHGRLRHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSF 518

Query: 513  PRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKE 334
              VER TEPL LIH+D+CDLK+VQTRGG KYF+TF+DD TKYCYVYLL+SKDEA+EKF  
Sbjct: 519  QSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVL 578

Query: 333  YKLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTL 154
            YK EVENQL+K IK++RSDRGGEY+ PF     +HGIIH+TT PYSP+SNGVAERKNRTL
Sbjct: 579  YKTEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTTPYSPQSNGVAERKNRTL 638

Query: 153  KEMMNAML 130
            KEMMNAML
Sbjct: 639  KEMMNAML 646



 Score =  112 bits (279), Expect = 1e-21
 Identities = 55/132 (41%), Positives = 78/132 (59%)
 Frame = -3

Query: 1593 VGTDANQFVHPNGFQSVQATVHMPGAVSASLMPEKFNGTGFKRWKKKMFSFLTSLKLEKY 1414
            V T+      P   Q    +  +P +VS    PEKF+G  FKRW++KM  +LT+L L ++
Sbjct: 9    VVTELAPVATPTVAQVPAMSTAVPISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARF 68

Query: 1413 LNEDKPMLSPHNTDPYLLDSINAWTHGDFLCKGWIQNRLIDPLCKVYSKIKTSKALWVAL 1234
            L ED P L     D  ++ +I+AW H DFLC+ ++ N L D L  VYS  KT+K LW +L
Sbjct: 69   LTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESL 128

Query: 1233 ERKYKADDCRSK 1198
            +RKYK +D  +K
Sbjct: 129  DRKYKTEDAGAK 140


>gb|AAT38766.2| Polyprotein, putative [Solanum demissum]
          Length = 1355

 Score =  365 bits (938), Expect = 5e-98
 Identities = 188/372 (50%), Positives = 249/372 (66%), Gaps = 3/372 (0%)
 Frame = -3

Query: 1224 YKADDCRSKA---DPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGAT 1054
            +K+ DCR+     D  K KGKSQ  ++E      DLC ++SE N+VG NP EW+ D+GAT
Sbjct: 318  HKSSDCRAPRKDKDKDKGKGKSQANIVEEMEDADDLCGMISECNLVG-NPKEWFLDSGAT 376

Query: 1053 RHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIR 874
            RHICS + +F TY   + DE LFMGN++T+++ G GKV+            NV+HVP IR
Sbjct: 377  RHICSAKEVFATYTHVEVDEDLFMGNTTTTRIAGTGKVMLKMTSGKVLTLNNVLHVPTIR 436

Query: 873  KNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSM 694
            KNL+   LL KNGF+   VSDK V+SKN ++LG GY+ +GL K NVM V         S+
Sbjct: 437  KNLVYVALLVKNGFKCVLVSDKTVISKNEMFLGKGYLTEGLFKLNVMVVD--------SI 488

Query: 693  NKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSKDKCEVCVHAKLTKTPS 514
            NKN+   Y++ES ++WH RLGHVN K++++L+ + ++   K  K KCE+CV         
Sbjct: 489  NKNSASVYLLESNDLWHARLGHVNYKALRKLVTLEVLLDFKCDKSKCEICVE-------- 540

Query: 513  PRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKE 334
                           ++CD+K   +RGGKKYF+TFIDDCT++CYVYLL SKDEA++ FK+
Sbjct: 541  ---------------NICDMKSTPSRGGKKYFITFIDDCTRFCYVYLLNSKDEAIDAFKQ 585

Query: 333  YKLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTL 154
            YK EVENQL+  IK+IRSDRGGEY+  F     E+GIIHQTTAPY+P+SNG+AERKNRTL
Sbjct: 586  YKNEVENQLNLKIKMIRSDRGGEYESLFAEICLEYGIIHQTTAPYTPQSNGLAERKNRTL 645

Query: 153  KEMMNAMLQESG 118
            KEMMNA++  SG
Sbjct: 646  KEMMNALIISSG 657


>emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]
          Length = 565

 Score =  346 bits (888), Expect = 3e-92
 Identities = 205/508 (40%), Positives = 290/508 (57%), Gaps = 49/508 (9%)
 Frame = -3

Query: 1494 EKFNGTGFKRWKKKMFSFLTSLKLEKYLNEDKPMLSPHNTDPYLLDSINAWTHGDFLCKG 1315
            + FNGT FKRW++++FS +  + LE  L + KP    H         +  W  G+   + 
Sbjct: 16   DPFNGTFFKRWQERVFSAIDVVNLEHILTDPKPKDGSH--------LLPTWETGNKQVRH 67

Query: 1314 WIQNRLIDPLCKVYSKIKTSKALWVALERKYKADDCRS---------------------- 1201
             I + L + L  +Y + K +K +W A+ +KY  +D  +                      
Sbjct: 68   AILSTLSNELFDIYCQFKVAKEIWDAMNKKYILEDAETQKYAIGNFRNFQMIEDRDVSSQ 127

Query: 1200 ----------------KADPP------KDKGKSQVTLIEGRLTDADLCAVV--SEVNMVG 1093
                            K   P      + K +++ T  +  L + ++   V  SEV+MV 
Sbjct: 128  IHDYHLLINDLAIEDIKLPEPFVVAQCRHKKRTKKTNSKENLAETEVITAVISSEVSMV- 186

Query: 1092 DNPMEWWYDTGATRHICSDRGMFTTYLKSKS-DELLFMGNSSTSKVDGHGKVVXXXXXXX 916
                EW  D+GATRHIC +R  FT+Y   K  +E +FMG+S ++ V G GKV+       
Sbjct: 187  TYMKEWVVDSGATRHICGNRSAFTSYTTVKEGEEQVFMGDSRSTPVIGKGKVLLKLTSGK 246

Query: 915  XXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNV 736
                 +V+HVPDIR NL+S +LL K G ++ F SDK+VL+KN  ++G GY   GL + NV
Sbjct: 247  VLALCDVLHVPDIRWNLVSVSLLGKAGVKILFESDKIVLTKNDAFVGKGYCNQGLFRLNV 306

Query: 735  MPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSKD- 559
              +I N        N ++  AY+V+S + WH RLGHVN   +++++ ++LIPK       
Sbjct: 307  FYIIIN--------NTSSSSAYIVDSCDTWHGRLGHVNFSYMKKMVELSLIPKLSLENHG 358

Query: 558  KCEVCVHAKLTKTPSPRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYV 379
            KCE CV +K TK     VER  + L LIH+DL DLK   TR GK++++TFIDD ++Y  V
Sbjct: 359  KCESCVESKTTKKSCKSVERELDLLSLIHSDLGDLKNTMTRDGKRFYITFIDDYSRYTRV 418

Query: 378  YLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEYDEP-FNAFYKEHGIIHQTTAP 202
            YLLR+KDEA + F +YK EVENQL+K I+ +R+DRGGEY+   FN+F ++H IIH+TT P
Sbjct: 419  YLLRNKDEARDAFIKYKNEVENQLNKKIERLRTDRGGEYESNLFNSFCEDHRIIHETTPP 478

Query: 201  YSPESNGVAERKNRTLKEMMNAMLQESG 118
            YSPESNG+AERKNRTLKEMMNAML  SG
Sbjct: 479  YSPESNGIAERKNRTLKEMMNAMLVSSG 506


>emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera]
          Length = 839

 Score =  337 bits (864), Expect = 2e-89
 Identities = 184/367 (50%), Positives = 231/367 (62%), Gaps = 1/367 (0%)
 Frame = -3

Query: 1227 KYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRH 1048
            K + D+C S+    K   +S+V L+E +             NMV DN  EWW DTGATRH
Sbjct: 110  KIEEDNCVSEKKVGKHPMESKVNLVEPKANKKIKHFGEGPTNMV-DNLNEWWVDTGATRH 168

Query: 1047 ICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRKN 868
            +C +R MF+               S+   V G GKVV           T+V+HV DIRKN
Sbjct: 169  VCGERNMFS---------------STNQWVVGIGKVVLNMTSGKELVLTDVLHVSDIRKN 213

Query: 867  LISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMNK 688
            L+             F  DK V  K G+Y+G G++ +GL   NVM     ++  + + NK
Sbjct: 214  LLV------------FEPDKFVFMKIGMYVGKGFMTNGLFNMNVM-----TVKHDFNNNK 256

Query: 687  NNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTS-KDKCEVCVHAKLTKTPSP 511
             +   Y++ESF  WH RLGHVNNK+++ L+NMNL+       K KCEVCV AK+ K P  
Sbjct: 257  VSTSVYLIESFTFWHNRLGHVNNKTLKMLINMNLLHFFSIDFKHKCEVCVEAKMAKPPFH 316

Query: 510  RVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKEY 331
             +ER T+P  LIH D+CDLK+VQTRGGK YF+TFIDDC +YCYVYLLRSKDEAL+ FK Y
Sbjct: 317  SIERNTKPPDLIHNDICDLKFVQTRGGKMYFITFIDDCIRYCYVYLLRSKDEALDVFKHY 376

Query: 330  KLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTLK 151
            K EVENQLS+ IK IRSDRGG+Y+ PF  F  +HGIIHQTTAPYSP+SNGVA+RK+ TLK
Sbjct: 377  KNEVENQLSRKIKAIRSDRGGKYEAPFGEFCSKHGIIHQTTAPYSPQSNGVAKRKSCTLK 436

Query: 150  EMMNAML 130
            EMMN +L
Sbjct: 437  EMMNNIL 443


>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score =  312 bits (799), Expect = 7e-82
 Identities = 168/389 (43%), Positives = 249/389 (64%), Gaps = 5/389 (1%)
 Frame = -3

Query: 1269 KIKTSKAL-WVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVG 1093
            +IK  K + +V  +  +K+  C  +   P  K   Q  L E    D+++ A + E N++ 
Sbjct: 274  QIKKKKLVCYVCRKEGHKSYQCNQRKGRPSQKPTPQANLAE---QDSEIIAAIVEANLI- 329

Query: 1092 DNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXX 913
            +N  +W  DTGA+RH C++R +   Y  +   E +FMGNS+T+ V G GKV+        
Sbjct: 330  ENKTDWILDTGASRHFCTNRELLHDYEDTVDGECVFMGNSATAGVIGKGKVILKLTSGKT 389

Query: 912  XXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVM 733
               +NV++VP +R+NL+S +LL++ G ++    DK+VL+KNG ++G GY+ +GL      
Sbjct: 390  LSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGNFVGKGYLSNGLF----- 444

Query: 732  PVIPNSIVSNVSMNKN-NHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK-D 559
                  +++ +SMN N +  AY++ES N+WH RLGHVN  SI++L +M LI   +T +  
Sbjct: 445  ------VLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETG 498

Query: 558  KCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCY 382
            KC VC+ +K  K P   VE RTTE L LI++DL D +   +RGGK Y+V+F+DD +++  
Sbjct: 499  KCPVCIESKFHKKPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTK 558

Query: 381  VYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQTTA 205
            +YL+++K+EA+  F ++K E ENQL K IK +RSDRGGEY D+    F + +GIIH+ TA
Sbjct: 559  IYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTA 618

Query: 204  PYSPESNGVAERKNRTLKEMMNAMLQESG 118
            PYSP+ NG+AERKNRTLKEMMNAML  SG
Sbjct: 619  PYSPQQNGIAERKNRTLKEMMNAMLLSSG 647


>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 1034

 Score =  306 bits (785), Expect = 3e-80
 Identities = 160/359 (44%), Positives = 226/359 (62%)
 Frame = -3

Query: 1194 DPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRHICSDRGMFTTY 1015
            DP   +G++ V  +  ++      + ++EV  V D+ + WW D+GAT H+C DRG F TY
Sbjct: 231  DPSSHQGQNSVFDLHSKVY---YVSKIAEVFYVQDDEVAWWIDSGATIHVCKDRGWFKTY 287

Query: 1014 LKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRKNLISDTLLSKNG 835
               +   +L+MGN ST+ + G GKVV            +V+HVP IRKNL+S ++L+K G
Sbjct: 288  EPVQDGSVLYMGNESTAPILGRGKVVLEFSSGKTLDLNDVIHVPGIRKNLVSGSVLNKCG 347

Query: 834  FEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMNKNNHIAYVVESF 655
            F+  + SDK VLSK GV++G GY  +G+   N+  V+ NSI    S   +          
Sbjct: 348  FKQVYESDKYVLSKCGVFVGFGYFCNGMFMLNINKVV-NSIYMACSSKNDT--------- 397

Query: 654  NIWHERLGHVNNKSIQRLMNMNLIPKCKTSKDKCEVCVHAKLTKTPSPRVERTTEPLGLI 475
            ++WH RLGHV+ K +  +    LIP    + +KC  C+  K+ + P   +ER ++ L LI
Sbjct: 398  SLWHARLGHVHYKGMIEMSKEGLIPTFDVNIEKCRTCMLTKIIRQPFKSIERNSKVLELI 457

Query: 474  HTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKEYKLEVENQLSKTI 295
            H+DLCD+    + G KKYF+TFIDD +++CYVYLL +KDEALEKFK YK EVE Q S  +
Sbjct: 458  HSDLCDIHATSSLGNKKYFITFIDDYSRFCYVYLLHAKDEALEKFKVYKTEVELQHSDLV 517

Query: 294  KIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            K +R+DRGGEY +P   +++  GIIH+TTAPY+P+ NGV ERKNR LKEM+N+ML  SG
Sbjct: 518  KKLRTDRGGEYYDP--TYFQSVGIIHETTAPYTPQQNGVFERKNRVLKEMVNSMLSYSG 574


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score =  306 bits (783), Expect = 5e-80
 Identities = 178/391 (45%), Positives = 235/391 (60%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 348  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVL 402

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 403  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNESLAAVHGVGTVDLKFTS 460

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 461  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 520

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+ + ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 521  SLNDMCNNH-------NAVNHISEIDES-NVWHSRLCHVNFGCLTRLANMSLIPKFTLVK 572

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 693  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 723


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  305 bits (781), Expect = 9e-80
 Identities = 179/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 203  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVL 257

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 258  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 315

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 316  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 375

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 376  SLNDMCNNH-------NAVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 427

Query: 561  D-KCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
            D KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF T IDDCT++
Sbjct: 428  DSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFTTLIDDCTRF 487

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 488  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 547

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 548  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 578


>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  304 bits (779), Expect = 1e-79
 Identities = 179/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KDK  + + + EG  T      ++  V 
Sbjct: 348  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDKKSANMIISEGGGTSG-YGKILPTVL 402

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 403  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 460

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 461  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 520

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 521  SLNDMCNNH-------NAVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 693  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 723


>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1298

 Score =  303 bits (776), Expect = 3e-79
 Identities = 178/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 348  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVL 402

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 403  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 460

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 461  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 520

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 521  SLNDMCNNH-------NAVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 693  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 723


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  303 bits (776), Expect = 3e-79
 Identities = 178/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 348  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPRVL 402

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 403  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 460

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 461  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 520

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 521  SLNDMCNNH-------NVVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 693  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 723


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  303 bits (776), Expect = 3e-79
 Identities = 178/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 329  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPRVL 383

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 384  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 441

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 442  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 501

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 502  SLNDMCNNH-------NVVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 553

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 554  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 613

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 614  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 673

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 674  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 704


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score =  302 bits (774), Expect = 6e-79
 Identities = 173/370 (46%), Positives = 226/370 (61%), Gaps = 3/370 (0%)
 Frame = -3

Query: 1218 ADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRHICS 1039
            A DC  +    KD+  + + + EG  T      ++  V  V  +P +WW DTGA  H+C+
Sbjct: 404  AKDCPER----KDRKSANMVISEGGGTSG-YGKILPTVLSVFHSP-DWWVDTGANIHVCA 457

Query: 1038 DRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRKNLIS 859
            D  +F++Y   +   LL MGN S + V G G V             NV HVP I+KNL+S
Sbjct: 458  DISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVS 516

Query: 858  DTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMNKNNH 679
             +LL + GF + F S+K V+SK G ++G GY   GL + ++  +  N        N  NH
Sbjct: 517  GSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNH-------NAVNH 569

Query: 678  IAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK-DKCEVCVHAKLTKTPSPRVE 502
            I+   ES N+WH RL HVN   + RL NM+LIPK    K  KC  CV +K  + P    E
Sbjct: 570  ISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASE 628

Query: 501  -RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKEYKL 325
             R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++CYVYLL++KDEAL  FK YK 
Sbjct: 629  ARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKA 688

Query: 324  EVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTLKE 148
            EVENQL + IK +RSDRGGEY    F +F +E GIIH+ T PYSP+SNGVAERKNRTL E
Sbjct: 689  EVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTE 748

Query: 147  MMNAMLQESG 118
            M+NAML  +G
Sbjct: 749  MVNAMLDTAG 758


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708705|gb|ABF96500.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1240

 Score =  301 bits (772), Expect = 1e-78
 Identities = 173/370 (46%), Positives = 225/370 (60%), Gaps = 3/370 (0%)
 Frame = -3

Query: 1218 ADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGATRHICS 1039
            A DC  +    KD+  + + + EG  T      ++  V  V  +P +WW DTGA  H+C+
Sbjct: 224  AKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVLSVFHSP-DWWVDTGANIHVCA 277

Query: 1038 DRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDIRKNLIS 859
            D   F++Y   +   LL MGN S + V G G V             NV HVP I+KNL+S
Sbjct: 278  DISQFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVS 336

Query: 858  DTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVSMNKNNH 679
             +LL + GF + F S+K V+SK G ++G GY   GL + ++  +  N        N  NH
Sbjct: 337  GSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNH-------NAVNH 389

Query: 678  IAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK-DKCEVCVHAKLTKTPSPRVE 502
            I+   ES N+WH RL HVN   + RL NM+LIPK    K  KC  CV +K  + P    E
Sbjct: 390  ISENDES-NVWHSRLCHVNFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASE 448

Query: 501  -RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFKEYKL 325
             R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++CYVYLL++KDEAL  FK YK 
Sbjct: 449  ARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKA 508

Query: 324  EVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRTLKE 148
            EVENQL + IK +RSDRGGEY    F +F +E GIIH+ T PYSP+SNGVAERKNRTL E
Sbjct: 509  EVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTE 568

Query: 147  MMNAMLQESG 118
            M+NAML  +G
Sbjct: 569  MVNAMLDTAG 578


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  301 bits (771), Expect = 1e-78
 Identities = 175/372 (47%), Positives = 226/372 (60%), Gaps = 4/372 (1%)
 Frame = -3

Query: 1224 YKADDCRSKAD---PPKDKGKSQVTLIEGRLTDADLCAVVSEVNMVGDNPMEWWYDTGAT 1054
            + A  CR +A    PPK        L EG  T   + AVVS+VN+V  N  +W  D+GAT
Sbjct: 280  HHAPQCRHRAKNDYPPK------ANLAEGEDT---IVAVVSQVNLV-TNVSKWVVDSGAT 329

Query: 1053 RHICSDRGMFTTYLK-SKSDELLFMGNSSTSKVDGHGKVVXXXXXXXXXXXTNVMHVPDI 877
            RHIC++R +FT+Y      +E +++G+S T+ V G GKV+            +V+HVP I
Sbjct: 330  RHICANRNVFTSYTSVGDGEEQVYLGDSRTTPVLGKGKVLLKLTSGKTLALNDVLHVPSI 389

Query: 876  RKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQNVMPVIPNSIVSNVS 697
            R NL+S  LLSK G +V F SDK+V++KN V++G GY   GL   N+  +          
Sbjct: 390  RVNLVSVALLSKVGVKVSFESDKIVITKNNVFVGKGYCDQGLFVLNISEI---------- 439

Query: 696  MNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSKDKCEVCVHAKLTKTP 517
            MN++   AY+V+S++IWH RLGHVN+  + +L  + LI        KC+           
Sbjct: 440  MNESTSSAYIVDSYDIWHARLGHVNSSYVIKLQRLGLINMHDKESSKCD----------- 488

Query: 516  SPRVERTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKYCYVYLLRSKDEALEKFK 337
                    + LGLIHTDL DLK   +RGGK YFVTFIDD ++Y  VYL++ KDEA + F 
Sbjct: 489  --------KILGLIHTDLADLKQTMSRGGKNYFVTFIDDFSRYTKVYLIKHKDEAFDMFL 540

Query: 336  EYKLEVENQLSKTIKIIRSDRGGEYDEPFNAFYKEHGIIHQTTAPYSPESNGVAERKNRT 157
             YK EVENQL+K IK IRSDRGGEY   FN +  + GIIH+ T PYSPESNGVAERKNRT
Sbjct: 541  TYKAEVENQLNKKIKRIRSDRGGEY-VLFNDYCVKEGIIHEVTPPYSPESNGVAERKNRT 599

Query: 156  LKEMMNAMLQES 121
            LKEMMNAML  S
Sbjct: 600  LKEMMNAMLISS 611


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score =  301 bits (770), Expect = 2e-78
 Identities = 178/391 (45%), Positives = 233/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 343  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVL 397

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 398  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGSSLL-MGNGSLAAVHGVGTVDLKFTS 455

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL +  F + F S+K V+SK G ++G GY   GL + 
Sbjct: 456  GKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 515

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 516  SLNDMCNNH-------NAVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 567

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL LIH+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 568  GSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 627

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 628  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 687

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNGVAERKNRTL EM+NAML  +G
Sbjct: 688  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAG 718


>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
          Length = 1413

 Score =  301 bits (770), Expect = 2e-78
 Identities = 177/391 (45%), Positives = 234/391 (59%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1281 KVYSKIKTSKALWVALERKYKADDCRSKADPPKDKGKSQVTLIEGRLTDADLCAVVSEVN 1102
            K  SK K     +V  +  + A DC  +    KD+  + + + EG  T      ++  V 
Sbjct: 348  KKKSKGKAKGDCFVCGKSGHWAKDCPER----KDRKSANMIISEGGGTSG-YGKILPTVL 402

Query: 1101 MVGDNPMEWWYDTGATRHICSDRGMFTTYLKSKSDELLFMGNSSTSKVDGHGKVVXXXXX 922
             V  +P +WW DTGA  H+C+D  +F++Y   +   LL MGN S + V G G V      
Sbjct: 403  SVFHSP-DWWVDTGANIHVCADISLFSSYQVGRGFSLL-MGNGSLAAVHGVGTVDLKFTS 460

Query: 921  XXXXXXTNVMHVPDIRKNLISDTLLSKNGFEVKFVSDKLVLSKNGVYLGNGYVKDGLVKQ 742
                   NV HVP I+KNL+S +LL + GF + F S+K V+SK G ++G GY   GL + 
Sbjct: 461  GKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRF 520

Query: 741  NVMPVIPNSIVSNVSMNKNNHIAYVVESFNIWHERLGHVNNKSIQRLMNMNLIPKCKTSK 562
            ++  +  N        N  NHI+   ES N+WH RL HVN   + RL NM+LIPK    K
Sbjct: 521  SLNDMCNNH-------NAVNHISENDES-NVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 561  -DKCEVCVHAKLTKTPSPRVE-RTTEPLGLIHTDLCDLKYVQTRGGKKYFVTFIDDCTKY 388
              KC  CV +K  + P    E R   PL L+H+DLC++  V T+GGKKYF+T IDDCT++
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 387  CYVYLLRSKDEALEKFKEYKLEVENQLSKTIKIIRSDRGGEY-DEPFNAFYKEHGIIHQT 211
            CYVYLL++KDEAL  FK YK EVENQL + IK +RSDRGGEY    F +F +E GIIH+ 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 210  TAPYSPESNGVAERKNRTLKEMMNAMLQESG 118
            T PYSP+SNG+AERKNRTL EM+NAML  +G
Sbjct: 693  TPPYSPQSNGMAERKNRTLTEMVNAMLDTAG 723