BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00009707
         (2168 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ23233.1| hypothetical protein PRUPE_ppa003040mg [Prunus pe...   440   e-120
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   436   e-119
ref|XP_004292965.1| PREDICTED: pentatricopeptide repeat-containi...   434   e-119
gb|EXC20787.1| hypothetical protein L484_007369 [Morus notabilis]     433   e-118
ref|XP_002308636.1| hypothetical protein POPTR_0006s26360g [Popu...   432   e-118
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   432   e-118
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...   426   e-116
ref|XP_004498635.1| PREDICTED: pentatricopeptide repeat-containi...   421   e-115
ref|XP_006353639.1| PREDICTED: pentatricopeptide repeat-containi...   419   e-114
ref|XP_004241813.1| PREDICTED: pentatricopeptide repeat-containi...   417   e-114
gb|ESW33251.1| hypothetical protein PHAVU_001G055200g [Phaseolus...   415   e-113
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...   414   e-113
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ...   407   e-110
gb|EOY31375.1| Pentatricopeptide repeat (PPR) superfamily protei...   402   e-109
gb|EOY31373.1| Pentatricopeptide repeat superfamily protein isof...   402   e-109
gb|EOY31372.1| Pentatricopeptide repeat superfamily protein isof...   402   e-109
ref|XP_006476197.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   374   e-101
ref|XP_006286475.1| hypothetical protein CARUB_v10000508mg [Caps...   370   1e-99
ref|XP_002871469.1| pentatricopeptide repeat-containing protein ...   368   5e-99
ref|NP_196692.1| pentatricopeptide repeat-containing protein [Ar...   368   5e-99

>gb|EMJ23233.1| hypothetical protein PRUPE_ppa003040mg [Prunus persica]
          Length = 609

 Score =  440 bits (1132), Expect = e-120
 Identities = 218/332 (65%), Positives = 267/332 (80%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ E+LW +M+++NV P+VVTYGTL+EGYCRM R E AIELVSEM+ +GIEPNA+
Sbjct: 275  RSRKLKRAERLWAEMKRDNVKPSVVTYGTLIEGYCRMRRAEIAIELVSEMRSEGIEPNAI 334

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+N I+DAL EAGKFKEALGM+E FLVLESGPT+STYNSL KGFCKAGDLVGASKILKMM
Sbjct: 335  VYNAIIDALGEAGKFKEALGMMEHFLVLESGPTISTYNSLAKGFCKAGDLVGASKILKMM 394

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             S+  +PT TTYNYF RYFSK   I+EGM+LYTKMI+ GY PDRLTFHL+LKMLC+  +L
Sbjct: 395  ISKGCVPTPTTYNYFFRYFSKFGKIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCDEGRL 454

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
              AVQVS+EMR RG DMDLA+STML+HL C + K+ EAFA FED+I RG+ PQYLT+QRM
Sbjct: 455  GLAVQVSKEMRSRGLDMDLATSTMLIHLLCNVHKFKEAFAEFEDMIRRGLVPQYLTFQRM 514

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
              EL K    +M   + ++M+SVPHST LPNT+  E  AS H RRK+I+QKA+AMS++L+
Sbjct: 515  NVELRKQGMTEMAHKMCNMMSSVPHSTNLPNTYVRERDAS-HARRKSIIQKAEAMSDLLK 573

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
            TC+DP +L K R  PEN V  A +L+E+   +
Sbjct: 574  TCSDPRELVKYRSLPENVVSRANQLVEDIKRK 605



 Score =  139 bits (349), Expect = 7e-30
 Identities = 83/190 (43%), Positives = 106/190 (55%), Gaps = 13/190 (6%)
 Frame = +2

Query: 200 RNLSSLAFLTARNSSNSNLQFRSSICRLFAYQPWL-------------PDPQLHPVXXXX 340
           R+  SLA L  +   N NL  R+   R F+ Q WL             PD          
Sbjct: 7   RHFLSLALLLFK--PNPNLNLRALSLRFFSNQSWLSVRGNPIIKWPSPPDIPCSLPHPNP 64

Query: 341 XXXXXXXXXXXXXXFSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDH 520
                         FS+ DF+ I  +L + +I PGS L+SAL  T I P P LL+AV DH
Sbjct: 65  APNPNPNPNSSGPNFSQNDFSTIANVLADPSISPGSSLQSALDRTGIEPGPCLLQAVFDH 124

Query: 521 FDSSPKLLFSLFKWAEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKL 700
           FDSSPKLL +LF WAEK+PGF  SA LF  +INVL K+REF+SAW+++L++I GD    L
Sbjct: 125 FDSSPKLLHTLFLWAEKRPGFRSSATLFGCMINVLAKSREFESAWSLILNRIGGDEEPGL 184

Query: 701 ASVDSFAILI 730
            SVD+F I+I
Sbjct: 185 VSVDTFVIMI 194


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  436 bits (1121), Expect = e-119
 Identities = 215/333 (64%), Positives = 265/333 (79%), Gaps = 1/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LWL+M+K NV P+VVTYGTLVEGYCRM RVERAIELV  M+K+GIEPNA+
Sbjct: 242  RSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNAL 301

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAE G+FKE  GM+E FL  ESGPT+STYNSLVKG+CKA D VGASK+LKMM
Sbjct: 302  VYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMM 361

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  +PT TTYNYF R+FSK  MI+EGM+LYTKMI+ GY PDRLTFHL+LKMLCE E+L
Sbjct: 362  ISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERL 421

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQ+S+EMR RG DMDLA+STML+HLFC+M ++ EAF  FED+I +GI PQYLT+QR+
Sbjct: 422  DLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRL 481

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +EL K    +  + LS +M+SVPHST LPNT++ E  A    RR +ILQKA+AMS +L+
Sbjct: 482  NDELRKRGMVERARKLSDMMSSVPHSTNLPNTYSVEGDALRRARRSSILQKAEAMSKILK 541

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNARI 1743
            TCNDP +L K +   +N + +A +LIE    R+
Sbjct: 542  TCNDPRELVKLKSSSQNPITSAIQLIENIRKRV 574



 Score =  120 bits (302), Expect = 2e-24
 Identities = 65/116 (56%), Positives = 80/116 (68%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           +S  DF+ +C LL + N+ P   LE+AL +T I P   LL AV DHF+SSPKLL SLF W
Sbjct: 56  YSHSDFSTLCNLLSDPNLKP---LETALDQTGIKPETSLLNAVFDHFNSSPKLLHSLFVW 112

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           A+KQP FE S  LFNS+IN LGK +EFDSAW +VLD+      + L S D+FAILI
Sbjct: 113 ADKQPEFESSTTLFNSVINALGKMKEFDSAWCLVLDR------TGLVSSDTFAILI 162


>ref|XP_004292965.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 582

 Score =  434 bits (1117), Expect = e-119
 Identities = 215/332 (64%), Positives = 267/332 (80%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLKK E+LW++M+ + V P+VVTYGTLVEGYCRM R E A+ELV EM+++G+EPNA+
Sbjct: 248  RSRKLKKAERLWVEMKSDGVKPSVVTYGTLVEGYCRMRRPEIAMELVGEMRREGVEPNAI 307

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            VFNPI+DAL EAG+FKEA GM+ERF VLESGPT+STYNSLVKG+CKAG+LV AS+ILKMM
Sbjct: 308  VFNPIIDALGEAGRFKEAWGMMERFSVLESGPTISTYNSLVKGYCKAGNLVEASRILKMM 367

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR I+PT  TYNYF RYFSK   I+EGM+LYTKMI+ GY PDRLTFHL+LKMLCE  +L
Sbjct: 368  ISRGIVPTPATYNYFFRYFSKSGKIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEGRL 427

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQVS+EMR RG DMDLA+STML+HL CKM K+ EA + FED+I +G+ PQYLT+Q M
Sbjct: 428  DLAVQVSKEMRTRGCDMDLATSTMLIHLLCKMNKFKEALSEFEDMIRKGLVPQYLTFQNM 487

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +EL K    +M + L +LM+SVPHSTKLPNT+  +D+   H RRK+I++KA+AMS VL+
Sbjct: 488  NDELRKQGMTEMARKLCALMSSVPHSTKLPNTYV-KDRDESHERRKSIIKKAEAMSKVLK 546

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
            TC+DP +L K R  PE+    A RLIE+   +
Sbjct: 547  TCSDPRELVKHRSSPESVESRANRLIEDIKTK 578



 Score =  139 bits (349), Expect = 7e-30
 Identities = 69/116 (59%), Positives = 86/116 (74%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ DF+ I  LL + +I PG+ L SAL    I PSP L++AV DHFDSSPKLL +LF W
Sbjct: 52  FSENDFSTITKLLTDPSIFPGASLRSALDRVGIDPSPSLVQAVFDHFDSSPKLLHTLFVW 111

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           AE+QPGF  S  LF S+INVL KAREF+SAW+M+LD+I GD  + L SVD+F I+I
Sbjct: 112 AEEQPGFRCSVKLFTSVINVLAKAREFESAWSMILDRIGGDKEAGLVSVDAFVIMI 167



 Score = 45.8 bits (107), Expect(2) = 3e-07
 Identities = 31/159 (19%), Positives = 62/159 (38%)
 Frame = +1

Query: 745  CRMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNA 924
            C+   L +  ++   M    ++PT  TY      + +  ++E  + L ++M + G  P+ 
Sbjct: 352  CKAGNLVEASRILKMMISRGIVPTPATYNYFFRYFSKSGKIEEGMNLYTKMIESGYTPDR 411

Query: 925  VVFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKM 1104
            + F+ ++  L E G+   A+ + +          L+T   L+   CK      A    + 
Sbjct: 412  LTFHLLLKMLCEEGRLDLAVQVSKEMRTRGCDMDLATSTMLIHLLCKMNKFKEALSEFED 471

Query: 1105 MSSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDV 1221
            M  + ++P   T+        K  M +    L   M  V
Sbjct: 472  MIRKGLVPQYLTFQNMNDELRKQGMTEMARKLCALMSSV 510



 Score = 37.7 bits (86), Expect(2) = 3e-07
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +2

Query: 569 KQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDS 715
           ++ G EP+A++FN II+ LG+A  F  AW M+      +SG  +++ +S
Sbjct: 298 RREGVEPNAIVFNPIIDALGEAGRFKEAWGMMERFSVLESGPTISTYNS 346


>gb|EXC20787.1| hypothetical protein L484_007369 [Morus notabilis]
          Length = 612

 Score =  433 bits (1113), Expect = e-118
 Identities = 214/332 (64%), Positives = 266/332 (80%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ E+LW++M+++NV  TVVTYGTLVEGYCRM R E A+ELV EM+ +GIEPNA+
Sbjct: 281  RSRKLKRAERLWMEMKRDNVRSTVVTYGTLVEGYCRMRRAEIAVELVKEMRTEGIEPNAI 340

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DAL EAG+FKEALGM+ERFLVLESGPT+STYNSLVKGFCKAG+L GASKI+KMM
Sbjct: 341  VYNPIIDALGEAGRFKEALGMMERFLVLESGPTISTYNSLVKGFCKAGNLAGASKIIKMM 400

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
              R I+PT TTYNYF +YFSK   I+EGM+LYTKMI  G+ PDRLT+HL+LKMLCE  KL
Sbjct: 401  IGRGIIPTPTTYNYFFKYFSKFGKIEEGMNLYTKMIGSGHSPDRLTYHLLLKMLCEEGKL 460

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQV +EMR RGFDMDLA+STML+HLFC M+++ EA+  F D+I RGI PQYLTY RM
Sbjct: 461  DLAVQVGKEMRSRGFDMDLATSTMLIHLFCNMRRFEEAYLEFGDMIRRGIVPQYLTYHRM 520

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
            K+EL K    +MV  L  LM+SVPHSTKLPNT+T +  AS   RR ++++KA+A+S++L+
Sbjct: 521  KDELKKRGMTEMVSKLRDLMSSVPHSTKLPNTYTRDGDASSD-RRNSVMRKAEAISDMLK 579

Query: 1648 TCNDPSKLAKRQRP-ENDVETAERLIEEFNAR 1740
            TC +  +L   + P EN V  A RLIE+   +
Sbjct: 580  TCKESRELVNYRGPFENAVSLANRLIEDIQKK 611



 Score =  131 bits (329), Expect = 1e-27
 Identities = 66/116 (56%), Positives = 83/116 (71%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ +F AI  +L N NI  G  L +AL  T I PSP LL+AV DHFDSSPKLL+SLF W
Sbjct: 85  FSQNEFAAISEVLTNPNISGGFSLHTALDRTGIEPSPSLLQAVFDHFDSSPKLLYSLFLW 144

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           AEKQPG+  SA LF S+INVL K+REFDSAW+++L +I  +   +L   D+F I+I
Sbjct: 145 AEKQPGYRSSASLFASVINVLAKSREFDSAWSLILHRIGKEEEPRLVCEDTFVIMI 200


>ref|XP_002308636.1| hypothetical protein POPTR_0006s26360g [Populus trichocarpa]
            gi|222854612|gb|EEE92159.1| hypothetical protein
            POPTR_0006s26360g [Populus trichocarpa]
          Length = 607

 Score =  432 bits (1112), Expect = e-118
 Identities = 213/332 (64%), Positives = 261/332 (78%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LWL+M+K+NV P+VVTYGTLVEGY RM RVERAIELV EMK++GI+ NA+
Sbjct: 273  RSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAI 332

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAEAG+FKE LGM+E F + E GPT+STYNSLVKG+CKAGDLVGASKILKMM
Sbjct: 333  VYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMM 392

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR + PT TTYNYF R+FSK   I+EGM+LYTKMI+ GY PDRLT+HL+LKMLCE E+L
Sbjct: 393  ISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERL 452

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQ+S+EMR RG DMDLA+STM  HL CKMQ++ EAFA FED++ RGI PQYLT+ R+
Sbjct: 453  DLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRL 512

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +E  K    ++ + L  LM+SV HS  LPNT+  +  AS H RRK+ILQKA  MS +L+
Sbjct: 513  NDEFRKQGLTELARRLCKLMSSVSHSKNLPNTYNVDRDASRHARRKSILQKAGVMSEILK 572

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
            TCNDP +L K R   +N   +A +LIE+   R
Sbjct: 573  TCNDPRELVKHRSSSQNPESSANQLIEDIKKR 604



 Score =  129 bits (323), Expect = 7e-27
 Identities = 63/116 (54%), Positives = 83/116 (71%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           + + DF  +C +L++  I  G  L +AL  T I P   L+++V DHFDSSPKLL S+F W
Sbjct: 77  YHQNDFFTLCNILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLW 136

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           AEK+PGF+ SA LFNS++N LGKAREF SAW ++LD+I G+ G  L S D+FAILI
Sbjct: 137 AEKKPGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILI 192


>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial [Vitis vinifera]
            gi|296081989|emb|CBI20994.3| unnamed protein product
            [Vitis vinifera]
          Length = 597

 Score =  432 bits (1111), Expect = e-118
 Identities = 214/336 (63%), Positives = 269/336 (80%), Gaps = 1/336 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ E+LW  M++ENV PTVVTYGTLVEGYCRM R E+AIELV EM+  GIEPN +
Sbjct: 263  RSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVI 322

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+D+LAEAG+FKEA+GM+ER LV E+GPT+STYNSLVKGFCKAGDLVGASK+LKMM
Sbjct: 323  VYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMM 382

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR   PT TTYNYF RYFS+    +EGM+LYTKMI+ G+ PDRLT+HL++KM+CE E+L
Sbjct: 383  ISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERL 442

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQVS+EMR RG D+DLA+STML+HL CKM +  EAFA FED+I RGI PQYLT++RM
Sbjct: 443  DLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERM 502

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             N L K    +M + L  +MASVPHS+KLPNT++ +  AS   R+ +I+Q+A+AMS++L+
Sbjct: 503  NNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDAS-RARKTSIIQRAEAMSDILK 561

Query: 1648 TCNDPSKLAKRQRP-ENDVETAERLIEEFNARIART 1752
            TCNDP +L KR+   EN V  A++LIE+   R  +T
Sbjct: 562  TCNDPRELVKRRSSFENTVLVADQLIEDIKRRANKT 597



 Score =  130 bits (328), Expect = 2e-27
 Identities = 65/116 (56%), Positives = 84/116 (72%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ DF+ ICALL +  +  G+ LE AL  T I P   LL+A+  HFD+SPK LF+LF+W
Sbjct: 67  FSQSDFSTICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRW 126

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           A KQPGFE S  LFNS+I+VL K+R FDSAW +VLD+IEG    +L S ++FA+LI
Sbjct: 127 AMKQPGFESSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLI 182


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like isoform X1 [Glycine max]
          Length = 622

 Score =  426 bits (1095), Expect = e-116
 Identities = 217/332 (65%), Positives = 265/332 (79%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R+RKLK+ E+LW +M KEN+ PTVVTYGTLVEGYCRM RVE+A+E+V +M K+GI PNA+
Sbjct: 289  RLRKLKQGERLWAEM-KENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAI 347

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAEAG+FKEALGMLERF VLE GPT STYNSLVKGFCKAGDLVGASKILKMM
Sbjct: 348  VYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMM 407

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  LP+ATTYNYF RYFS+   I+EGM+LYTK+I  GY PDRLT+HL++KMLCE EKL
Sbjct: 408  ISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKL 467

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQVS+EMR  G+DMDLA+STML+HL CK+++  EAF  FED+I RGI PQYLT+QRM
Sbjct: 468  DLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRM 527

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
            K +L K    +M Q L  LM+SVP+S  LPNT+  E +   + RRK+I++KAKA S++L+
Sbjct: 528  KADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTY-GEVREDAYARRKSIIRKAKAFSDMLK 586

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
             C DPS+L K R   EN V +   LIE+   +
Sbjct: 587  DCKDPSELRKHRSSSENTVSSTNSLIEDIERK 618



 Score = 97.1 bits (240), Expect = 3e-17
 Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
 Frame = +2

Query: 401 TAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKWAEKQPG 580
           + I  L  + ++ PG  L + L    I P P LL AV D F SSPKLL SLF WA+ +P 
Sbjct: 94  SVISNLFADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPA 153

Query: 581 FEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGD-----SGSKLASVDSFAILI 730
           F P   LF++++N L KAREFD+AW +VL   E D        +L SV +FAI+I
Sbjct: 154 FRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMI 208


>ref|XP_004498635.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cicer arietinum]
          Length = 596

 Score =  421 bits (1083), Expect = e-115
 Identities = 217/333 (65%), Positives = 263/333 (78%), Gaps = 1/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LW +M+KENV P+VVTYGTLVEGYCRM RVE+A+E+V EM K+GIE NA+
Sbjct: 265  RARKLKHAERLWEEMKKENVKPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIEANAI 324

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAEAG+FKEALGM+ERF VL+ GPTLSTYNSLVKGFCKAGDL GASKILK M
Sbjct: 325  VYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDLEGASKILKKM 384

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  LP  TTYNYF RYFS+   I+EGM+LYTKMI+ G+ PDRLT+HL+LKMLCE E+L
Sbjct: 385  ISRGFLPIPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGHTPDRLTYHLVLKMLCEEERL 444

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQVS+EMR  G+DMDLA+STML+HL CKM +  EAFA FED+I RGI PQYLT+Q++
Sbjct: 445  DLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQKL 504

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
              EL K    +M Q L  LM++VPHST LPNT+  E + + H  RK+I+QKA+A+S++L+
Sbjct: 505  NVELKKQGMTEMSQKLCHLMSNVPHSTNLPNTY-GEVRDNAHAHRKSIIQKAQAVSDLLK 563

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNARI 1743
               DP +L K R   ENDV  A  LIE+   RI
Sbjct: 564  ---DPKELDKFRSSSENDVSIANCLIEDIKKRI 593



 Score =  124 bits (311), Expect = 2e-25
 Identities = 64/115 (55%), Positives = 79/115 (68%), Gaps = 3/115 (2%)
 Frame = +2

Query: 395 DFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKWAEKQ 574
           +F+ I  L  N +I PGS L + L  T I P  PLL AV DHF SSPKLL SLF WA+KQ
Sbjct: 70  NFSLISTLFTNPSISPGSQLHAQLNRTGIKPDSPLLRAVFDHFASSPKLLHSLFLWADKQ 129

Query: 575 PGFEPSALLFNSIINVLGKAREFDSAWTMVLDKI---EGDSGSKLASVDSFAILI 730
           PGF+P   LF+S++N L K +EFDSAWT+VLD+I   E +   KL S+ +FAILI
Sbjct: 130 PGFKPDPTLFDSMVNALAKIKEFDSAWTLVLDRIHREEEEKEDKLVSIGTFAILI 184



 Score = 66.6 bits (161), Expect = 4e-08
 Identities = 55/280 (19%), Positives = 119/280 (42%), Gaps = 15/280 (5%)
 Frame = +1

Query: 751  MRKLKKVEKLWL---------QMRKENVMPTVVTYGTLVEGYCRMCRVERAIELV--SEM 897
            + K+K+ +  W          +  KE+ + ++ T+  L+  Y R    E AI     ++ 
Sbjct: 146  LAKIKEFDSAWTLVLDRIHREEEEKEDKLVSIGTFAILIRRYARAGMHEAAIRTFEFAKD 205

Query: 898  KKDGIEPNAVV--FNPIVDALAEAGKFKEALGMLERFLVLESG--PTLSTYNSLVKGFCK 1065
            KK  ++  + +  F  ++D+L + G  +EA     R    + G  P+   YN ++ G+ +
Sbjct: 206  KKSIVDSMSEMSLFGILIDSLCKEGSVREASEYFLRRKETDLGWVPSTRVYNIMLNGWFR 265

Query: 1066 AGDLVGASKILKMMSSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLT 1245
            A  L  A ++ + M   ++ P+  TY   +  + +   +++ + +  +M   G + + + 
Sbjct: 266  ARKLKHAERLWEEMKKENVKPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIEANAIV 325

Query: 1246 FHLMLKMLCEGEKLDWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLI 1425
            ++ ++  L E  +   A+ + +   V      L++   L+  FCK      A    + +I
Sbjct: 326  YNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDLEGASKILKKMI 385

Query: 1426 CRGIAPQYLTYQRMKNELTKHRKFQMVQALSSLMASVPHS 1545
             RG  P   TY       ++  K +    L + M    H+
Sbjct: 386  SRGFLPIPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGHT 425


>ref|XP_006353639.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Solanum tuberosum]
          Length = 604

 Score =  419 bits (1077), Expect = e-114
 Identities = 205/333 (61%), Positives = 263/333 (78%), Gaps = 1/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLKK E+LW +M+KE + P+VVTYGTLVEG CRM RVE AIEL+ EMK++GI PNAV
Sbjct: 270  RSRKLKKAERLWTEMKKEGIKPSVVTYGTLVEGLCRMRRVEMAIELIDEMKEEGIPPNAV 329

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NP++DAL EAG+FKEA GM+ER LVLESGPTLSTYNSLVKGFCKAGD+VGASKILKMM
Sbjct: 330  VYNPVIDALGEAGRFKEASGMMERLLVLESGPTLSTYNSLVKGFCKAGDIVGASKILKMM 389

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             +R ++PT TTYNYF RYFSK   I+EG++LYTK+I+ GY  DRLT+HL++KMLCE ++L
Sbjct: 390  INRGLMPTPTTYNYFFRYFSKFGKIEEGLNLYTKLIESGYVADRLTYHLLVKMLCEQDRL 449

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            + A+Q+ QEMR +GFD+DLA+STML+HLFCKM +++EA   F D+I RG+ PQYLTYQR+
Sbjct: 450  NLALQIIQEMRTKGFDLDLATSTMLIHLFCKMHQFDEAVEWFHDMIRRGLVPQYLTYQRL 509

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             N+L K       + L + M S P+S KLPNT+   D  + H +RK+I+ KA+ MSN+L+
Sbjct: 510  CNDLAKQGMNDKAEKLRNTMVSTPYSEKLPNTYI-RDGDTSHSKRKSIIAKAEEMSNILQ 568

Query: 1648 TCNDPSKLAKRQR-PENDVETAERLIEEFNARI 1743
            TC  P +L KR+  PEN V +A +LIE  + R+
Sbjct: 569  TCRSPRQLIKRRTPPENAVLSANQLIENISERV 601



 Score = 97.4 bits (241), Expect = 2e-17
 Identities = 48/112 (42%), Positives = 76/112 (67%)
 Frame = +2

Query: 395 DFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKWAEKQ 574
           DFT +C +LR+  I  G  LE+AL    +  +  +   + +HFDSSPK LF+L+ WAEK+
Sbjct: 82  DFTTLCEILRDPIIPAGPVLENALDRAGVEVNECMFLQLFNHFDSSPKPLFTLYLWAEKK 141

Query: 575 PGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
             F+ S  +FN+++N LGK REFDSAW ++LD++   + ++  ++D+FAI+I
Sbjct: 142 EWFKFSLPVFNAVVNALGKEREFDSAWNLILDRL---NSTERPNLDTFAIMI 190



 Score = 58.9 bits (141), Expect = 9e-06
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 7/256 (2%)
 Frame = +1

Query: 754  RKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCR---MCRVERAIELVS--EMKKDGIEP 918
            R+      L L        P + T+  ++  Y R   +    R  E  S  E+   G+E 
Sbjct: 162  REFDSAWNLILDRLNSTERPNLDTFAIMIRRYARAGMLLPAVRTYEFSSNLEIHALGLED 221

Query: 919  NAVVFNPIVDALAEAGKFKEALGMLERFLVLESG--PTLSTYNSLVKGFCKAGDLVGASK 1092
            N  +F  ++D+L + G  +EA     R    +S   P++  YN L+ G+ ++  L  A +
Sbjct: 222  N--LFEILLDSLCKEGLIREASDYFYRRKGQDSNWSPSIRVYNILLNGWFRSRKLKKAER 279

Query: 1093 ILKMMSSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLC 1272
            +   M    I P+  TY   +    +   ++  + L  +M + G  P+ + ++ ++  L 
Sbjct: 280  LWTEMKKEGIKPSVVTYGTLVEGLCRMRRVEMAIELIDEMKEEGIPPNAVVYNPVIDALG 339

Query: 1273 EGEKLDWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYL 1452
            E  +   A  + + + V      L++   L+  FCK      A    + +I RG+ P   
Sbjct: 340  EAGRFKEASGMMERLLVLESGPTLSTYNSLVKGFCKAGDIVGASKILKMMINRGLMPTPT 399

Query: 1453 TYQRMKNELTKHRKFQ 1500
            TY       +K  K +
Sbjct: 400  TYNYFFRYFSKFGKIE 415


>ref|XP_004241813.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Solanum lycopersicum]
          Length = 602

 Score =  417 bits (1073), Expect = e-114
 Identities = 203/333 (60%), Positives = 260/333 (78%), Gaps = 1/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLKK E+LW +M+KE + P+VVTYGTLVEG CRM RVE AIEL+ EMK++GI PN V
Sbjct: 270  RSRKLKKAERLWTEMKKEGIKPSVVTYGTLVEGLCRMRRVEMAIELIDEMKEEGIHPNVV 329

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NP++DAL EAG+FKEA GM+ER LVLESGPTLSTYNSLVKGFCKAGD+ GASKILKMM
Sbjct: 330  VYNPVIDALGEAGRFKEASGMMERLLVLESGPTLSTYNSLVKGFCKAGDIAGASKILKMM 389

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
              R  +PT TTYNYF RYFSK   I+EG++LYTK+I+ GY  DRLT+HL++KMLCE ++L
Sbjct: 390  IDRGFMPTPTTYNYFFRYFSKFGKIEEGLNLYTKLIESGYVADRLTYHLLVKMLCEQDRL 449

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D A+Q+ QEMR +GFD+DLA+STML+HLFCKM +++EA   F D+I RG+ PQYLTYQR+
Sbjct: 450  DLALQIIQEMRTKGFDLDLATSTMLIHLFCKMHQFDEAVEWFHDMIRRGVVPQYLTYQRL 509

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             N+L K       + L ++M S P++ KLPNT+   D  + H RRK+I+ KA+ MSN+++
Sbjct: 510  CNDLAKQGMNDNAEKLRNMMVSTPYAEKLPNTYI-RDGDTSHSRRKSIIAKAEEMSNIIQ 568

Query: 1648 TCNDPSKLAKRQR-PENDVETAERLIEEFNARI 1743
            TC  P +L KR+  PEN V +A +LIE  + R+
Sbjct: 569  TCRSPRQLIKRRTPPENAVLSANQLIENISERV 601



 Score = 99.4 bits (246), Expect = 6e-18
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 14/197 (7%)
 Frame = +2

Query: 182 SSTEMLRNLSSLAFLTARNSSNSNLQFRSSICRLFAYQPWLPDPQLHPVXXXXXXXXXXX 361
           +ST + R++ SL  L       S+L  ++   +LF+ Q WL   +  P+           
Sbjct: 5   NSTHIRRSIISLTSLV------SHLTTKNPTFKLFSTQSWLKSTRGKPLMKLPKLNYPPK 58

Query: 362 XXXXXXXFSKP--------------DFTAICALLRNHNILPGSGLESALQETKILPSPPL 499
                  FS P              DFT +  +LR+  I PG  LE+AL    I  +  +
Sbjct: 59  QPTPL--FSPPPSTHQPETPNYCPTDFTTLSEILRDPTIPPGPALENALDRAGIEVNECM 116

Query: 500 LEAVIDHFDSSPKLLFSLFKWAEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIE 679
              + +HFDSSPK LF+L+ WAEK+  F+ S  +FN+++N LGK REFDSAW ++LD++ 
Sbjct: 117 FLQLFNHFDSSPKPLFTLYLWAEKKEWFKFSLPVFNAVVNALGKEREFDSAWNLILDRL- 175

Query: 680 GDSGSKLASVDSFAILI 730
             + ++  ++ +FAI+I
Sbjct: 176 --NSTERPNLGTFAIMI 190


>gb|ESW33251.1| hypothetical protein PHAVU_001G055200g [Phaseolus vulgaris]
          Length = 606

 Score =  415 bits (1066), Expect = e-113
 Identities = 208/332 (62%), Positives = 259/332 (78%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ E+LW +M+KENV P+VVTYGTLVEGYCRM RVE+A+E+V +M K+GI PN +
Sbjct: 276  RSRKLKQGERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNVI 335

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAEAG+FKEALGMLERF +LE GPT STYNSL+KG+CKA DL GASKILKMM
Sbjct: 336  VYNPIIDALAEAGRFKEALGMLERFHILEIGPTDSTYNSLIKGYCKAADLAGASKILKMM 395

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  +P+ TTYNYF RYFS+   I+EGM+LY KMI+ GY PDRLT+HL++KMLCE  KL
Sbjct: 396  ISRGFIPSPTTYNYFFRYFSRCGKIEEGMNLYRKMIESGYTPDRLTYHLLVKMLCEEGKL 455

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQVS+EMR  G+DMDLA+STML+HL CKM +  EAFA FED+I RGI PQYLT+Q M
Sbjct: 456  DLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQGM 515

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
            K EL K    +M Q L  LM+SVP+S  LPNT+   D+     RRK+I++KAKA S++L+
Sbjct: 516  KAELKKQGMTEMAQKLCKLMSSVPYSDNLPNTY-GGDREDALTRRKSIIRKAKAFSDMLK 574

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
             C DPS+L + +   EN V +A  +IE+   +
Sbjct: 575  DCKDPSELRQWKNSSENAVSSANSMIEDIEGK 606



 Score =  106 bits (264), Expect = 5e-20
 Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
 Frame = +2

Query: 398 FTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKWAEKQP 577
           F+ I  L  + ++ PG  L + L  + I P P LL A+ D F SSPKLL SLF WA+ +P
Sbjct: 82  FSLISNLFTDPSVSPGPVLHAKLDRSAIEPDPALLLALFDRFGSSPKLLHSLFLWAQTRP 141

Query: 578 GFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGD---SGSKLASVDSFAILI 730
           GF P   LF++++N L KA+EFD+AW +VLD ++GD       L SV +FAI+I
Sbjct: 142 GFRPGPKLFDAVVNALAKAKEFDAAWKLVLDNVDGDGEEENESLVSVGTFAIMI 195


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
            gi|449503560|ref|XP_004162063.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  414 bits (1065), Expect = e-113
 Identities = 204/332 (61%), Positives = 257/332 (77%), Gaps = 1/332 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  ++LW +M+K  + PTVVTYGTL+EGYCRM  VE AIELV EM+++GIEPNA+
Sbjct: 279  RSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAI 338

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPIVDAL EAG+FKEALGM+ERF+VLE GPT+STYNSLVKG+CKAGDL GASKILKMM
Sbjct: 339  VYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMM 398

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
              R   PT TTYNYF R+FSK+  I+E MSLY KMI+ GY PD+LT+HL+LKMLCE E+L
Sbjct: 399  IGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERL 458

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            + AVQV  EM+ RGFDMDLA+STML+HL CKM K+ EAFA FE +I RGI PQYLT+ R+
Sbjct: 459  NLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRL 518

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +E  K    +M   L  +M+SVPHS KLP+T+ ++   S   RR +I++KA+AMS +L+
Sbjct: 519  HDEFMKRGLTKMASKLQEMMSSVPHSEKLPDTY-NQTPDSIRARRTSIMRKAEAMSEMLK 577

Query: 1648 TCNDPSKLAKRQRPEND-VETAERLIEEFNAR 1740
             C DP +L KR+ P  D V +A +LI++   +
Sbjct: 578  VCKDPRELVKRRSPSEDAVFSANKLIDDIKKK 609



 Score =  129 bits (323), Expect = 7e-27
 Identities = 63/116 (54%), Positives = 81/116 (69%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           +S  D + I ++L + ++ PG+ LE AL  T I+PS  LLEAV DHFDSSPK L SLF W
Sbjct: 84  YSPNDLSTISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLW 143

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           A K+ GF PSA LFN +INVL K+REFDSAW+++  ++ G   S L SV+ F ILI
Sbjct: 144 AAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILI 199


>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355477735|gb|AES58938.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  407 bits (1045), Expect = e-110
 Identities = 206/317 (64%), Positives = 251/317 (79%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LW +M+ ENV P+VVTYGTLVEGYCRM RVE+A+E+V EM K+GI+PNA+
Sbjct: 266  RARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAI 325

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DALAEAG+FKEALGM+ERF VL+ GPTLSTYNSLVKGFCKAGD+ GASKILK M
Sbjct: 326  VYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKM 385

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  LP  TTYNYF RYFS+   + EGM+LYTKMI+ G++PDRLT+HL+LKMLCE EKL
Sbjct: 386  ISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKL 445

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            + AVQVS EMR +G+DMDLA+STML HL CKM K  EAFA FED+I RGI PQYLT+Q++
Sbjct: 446  ELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKL 505

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
              EL K    +M + L  LM+SVP+S KLPNT+  E +   H RRK+I+QKAKA+S +L+
Sbjct: 506  NVELKKQGMNEMARKLCHLMSSVPYSDKLPNTY-GEVRDDAHARRKSIIQKAKAVSELLK 564

Query: 1648 TCNDPSKLAKRQRPEND 1698
               DP +L K +    D
Sbjct: 565  ---DPKELDKFRSSSED 578



 Score =  128 bits (321), Expect = 1e-26
 Identities = 66/118 (55%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS  DFT I  L  N +I PGS L + L +T I P+PPLL AV DHF SSPKLL SL+ W
Sbjct: 68  FSPNDFTLISTLFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLW 127

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKI--EGDSGSKLASVDSFAILI 730
           A  QPGF+P + LF+S+IN L K +EFD AW++VLD+I  + D   KL SV +FAI+I
Sbjct: 128 ALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIII 185


>gb|EOY31375.1| Pentatricopeptide repeat (PPR) superfamily protein, putative isoform
            4, partial [Theobroma cacao] gi|508784121|gb|EOY31377.1|
            Pentatricopeptide repeat (PPR) superfamily protein,
            putative isoform 4, partial [Theobroma cacao]
          Length = 560

 Score =  402 bits (1032), Expect = e-109
 Identities = 205/327 (62%), Positives = 252/327 (77%), Gaps = 1/327 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LWL M+KE V+P+VVTYGTLVEGYC M RVERAI+LV EMK  GIEPNA 
Sbjct: 222  RSRKLKHAERLWLDMKKEGVLPSVVTYGTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAK 281

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DAL EAG+ KEALGM+ER  + ESGP +S Y+SLVKG+CKA DLVGASKILKMM
Sbjct: 282  VYNPIIDALGEAGRLKEALGMMERVFLCESGPNISMYSSLVKGYCKARDLVGASKILKMM 341

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  +PT TTYNYF RYFS+   I+E M+LYTKMI+ G+ PDRLT+HL+LKML E E+L
Sbjct: 342  ISRGFIPTPTTYNYFFRYFSQFRKIEEAMNLYTKMIESGHTPDRLTYHLLLKMLFEEERL 401

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQ+S+EMR RG+D DLA+STML+HL CKM ++ +AF  FED+I RG+APQYLT+QRM
Sbjct: 402  DLAVQISKEMRARGYDRDLATSTMLIHLLCKMHRFEDAFGEFEDMIRRGMAPQYLTFQRM 461

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +EL K     M   L  +M+SV  S KLPNT+   D+ S   RR +I++KA+AMS++L+
Sbjct: 462  NDELKKRGMTDMASKLCDMMSSVRSSKKLPNTY-GGDEDSSRARRTSIMRKAEAMSDMLK 520

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIE 1725
            TC DP +  K R   EN V +A RLIE
Sbjct: 521  TCKDPREFVKHRTLSENAVSSAGRLIE 547



 Score =  132 bits (331), Expect = 8e-28
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ +F+ I  LL+N  I  GS LESAL +T+I P P LL+A+ + FDSSPKLL  LF W
Sbjct: 25  FSQSNFSIISNLLKNSTITSGSSLESALDQTEIDPDPGLLQAIFECFDSSPKLLHHLFLW 84

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKI-EGDSGSKLASVDSFAILI 730
           AEK+PGF+ SA LF+S++NVLGKAR F+ AW++VLD+I +G  GS L SV++F ILI
Sbjct: 85  AEKKPGFKSSATLFDSMVNVLGKARGFEDAWSLVLDRIGDGMEGSTLVSVNTFVILI 141



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 62/313 (19%), Positives = 129/313 (41%), Gaps = 6/313 (1%)
 Frame = +1

Query: 802  NVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKK----DGIEPNAVVFNPIVDALAEAGK 969
            + + +V T+  L+  Y R    + AI      K        +    +F  ++D+L + G 
Sbjct: 129  STLVSVNTFVILIRRYARAGMPQPAIRTFEFAKSLEQICNSDEETNLFEIMLDSLCKEGH 188

Query: 970  FKEALGMLERFLVLESG--PTLSTYNSLVKGFCKAGDLVGASKILKMMSSRHILPTATTY 1143
             +     L R    + G  P++  YN L+ G+ ++  L  A ++   M    +LP+  TY
Sbjct: 189  VRVVSEYLTRKRETDLGWVPSIKVYNILLNGWFRSRKLKHAERLWLDMKKEGVLPSVVTY 248

Query: 1144 NYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKLDWAVQVSQEMRV 1323
               +  +     ++  + L  +M  VG +P+   ++ ++  L E  +L  A+ + + + +
Sbjct: 249  GTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAKVYNPIIDALGEAGRLKEALGMMERVFL 308

Query: 1324 RGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRMKNELTKHRKFQM 1503
                 +++  + L+  +CK +    A    + +I RG  P   TY       ++ RK + 
Sbjct: 309  CESGPNISMYSSLVKGYCKARDLVGASKILKMMISRGFIPTPTTYNYFFRYFSQFRKIEE 368

Query: 1504 VQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLRTCNDPSKLAKRQ 1683
               L + M    H+          D+ + HL  K + ++ +     L      SK  + +
Sbjct: 369  AMNLYTKMIESGHT---------PDRLTYHLLLKMLFEEER-----LDLAVQISKEMRAR 414

Query: 1684 RPENDVETAERLI 1722
              + D+ T+  LI
Sbjct: 415  GYDRDLATSTMLI 427


>gb|EOY31373.1| Pentatricopeptide repeat superfamily protein isoform 2, partial
            [Theobroma cacao]
          Length = 584

 Score =  402 bits (1032), Expect = e-109
 Identities = 205/327 (62%), Positives = 252/327 (77%), Gaps = 1/327 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LWL M+KE V+P+VVTYGTLVEGYC M RVERAI+LV EMK  GIEPNA 
Sbjct: 246  RSRKLKHAERLWLDMKKEGVLPSVVTYGTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAK 305

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DAL EAG+ KEALGM+ER  + ESGP +S Y+SLVKG+CKA DLVGASKILKMM
Sbjct: 306  VYNPIIDALGEAGRLKEALGMMERVFLCESGPNISMYSSLVKGYCKARDLVGASKILKMM 365

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  +PT TTYNYF RYFS+   I+E M+LYTKMI+ G+ PDRLT+HL+LKML E E+L
Sbjct: 366  ISRGFIPTPTTYNYFFRYFSQFRKIEEAMNLYTKMIESGHTPDRLTYHLLLKMLFEEERL 425

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQ+S+EMR RG+D DLA+STML+HL CKM ++ +AF  FED+I RG+APQYLT+QRM
Sbjct: 426  DLAVQISKEMRARGYDRDLATSTMLIHLLCKMHRFEDAFGEFEDMIRRGMAPQYLTFQRM 485

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +EL K     M   L  +M+SV  S KLPNT+   D+ S   RR +I++KA+AMS++L+
Sbjct: 486  NDELKKRGMTDMASKLCDMMSSVRSSKKLPNTY-GGDEDSSRARRTSIMRKAEAMSDMLK 544

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIE 1725
            TC DP +  K R   EN V +A RLIE
Sbjct: 545  TCKDPREFVKHRTLSENAVSSAGRLIE 571



 Score =  132 bits (331), Expect = 8e-28
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ +F+ I  LL+N  I  GS LESAL +T+I P P LL+A+ + FDSSPKLL  LF W
Sbjct: 49  FSQSNFSIISNLLKNSTITSGSSLESALDQTEIDPDPGLLQAIFECFDSSPKLLHHLFLW 108

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKI-EGDSGSKLASVDSFAILI 730
           AEK+PGF+ SA LF+S++NVLGKAR F+ AW++VLD+I +G  GS L SV++F ILI
Sbjct: 109 AEKKPGFKSSATLFDSMVNVLGKARGFEDAWSLVLDRIGDGMEGSTLVSVNTFVILI 165



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 62/313 (19%), Positives = 129/313 (41%), Gaps = 6/313 (1%)
 Frame = +1

Query: 802  NVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKK----DGIEPNAVVFNPIVDALAEAGK 969
            + + +V T+  L+  Y R    + AI      K        +    +F  ++D+L + G 
Sbjct: 153  STLVSVNTFVILIRRYARAGMPQPAIRTFEFAKSLEQICNSDEETNLFEIMLDSLCKEGH 212

Query: 970  FKEALGMLERFLVLESG--PTLSTYNSLVKGFCKAGDLVGASKILKMMSSRHILPTATTY 1143
             +     L R    + G  P++  YN L+ G+ ++  L  A ++   M    +LP+  TY
Sbjct: 213  VRVVSEYLTRKRETDLGWVPSIKVYNILLNGWFRSRKLKHAERLWLDMKKEGVLPSVVTY 272

Query: 1144 NYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKLDWAVQVSQEMRV 1323
               +  +     ++  + L  +M  VG +P+   ++ ++  L E  +L  A+ + + + +
Sbjct: 273  GTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAKVYNPIIDALGEAGRLKEALGMMERVFL 332

Query: 1324 RGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRMKNELTKHRKFQM 1503
                 +++  + L+  +CK +    A    + +I RG  P   TY       ++ RK + 
Sbjct: 333  CESGPNISMYSSLVKGYCKARDLVGASKILKMMISRGFIPTPTTYNYFFRYFSQFRKIEE 392

Query: 1504 VQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLRTCNDPSKLAKRQ 1683
               L + M    H+          D+ + HL  K + ++ +     L      SK  + +
Sbjct: 393  AMNLYTKMIESGHT---------PDRLTYHLLLKMLFEEER-----LDLAVQISKEMRAR 438

Query: 1684 RPENDVETAERLI 1722
              + D+ T+  LI
Sbjct: 439  GYDRDLATSTMLI 451


>gb|EOY31372.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
            cacao] gi|508784118|gb|EOY31374.1| Pentatricopeptide
            repeat superfamily protein isoform 1 [Theobroma cacao]
            gi|508784120|gb|EOY31376.1| Pentatricopeptide repeat
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 595

 Score =  402 bits (1032), Expect = e-109
 Identities = 205/327 (62%), Positives = 252/327 (77%), Gaps = 1/327 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK  E+LWL M+KE V+P+VVTYGTLVEGYC M RVERAI+LV EMK  GIEPNA 
Sbjct: 257  RSRKLKHAERLWLDMKKEGVLPSVVTYGTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAK 316

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+NPI+DAL EAG+ KEALGM+ER  + ESGP +S Y+SLVKG+CKA DLVGASKILKMM
Sbjct: 317  VYNPIIDALGEAGRLKEALGMMERVFLCESGPNISMYSSLVKGYCKARDLVGASKILKMM 376

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  +PT TTYNYF RYFS+   I+E M+LYTKMI+ G+ PDRLT+HL+LKML E E+L
Sbjct: 377  ISRGFIPTPTTYNYFFRYFSQFRKIEEAMNLYTKMIESGHTPDRLTYHLLLKMLFEEERL 436

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D AVQ+S+EMR RG+D DLA+STML+HL CKM ++ +AF  FED+I RG+APQYLT+QRM
Sbjct: 437  DLAVQISKEMRARGYDRDLATSTMLIHLLCKMHRFEDAFGEFEDMIRRGMAPQYLTFQRM 496

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +EL K     M   L  +M+SV  S KLPNT+   D+ S   RR +I++KA+AMS++L+
Sbjct: 497  NDELKKRGMTDMASKLCDMMSSVRSSKKLPNTY-GGDEDSSRARRTSIMRKAEAMSDMLK 555

Query: 1648 TCNDPSKLAK-RQRPENDVETAERLIE 1725
            TC DP +  K R   EN V +A RLIE
Sbjct: 556  TCKDPREFVKHRTLSENAVSSAGRLIE 582



 Score =  132 bits (331), Expect = 8e-28
 Identities = 68/117 (58%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ +F+ I  LL+N  I  GS LESAL +T+I P P LL+A+ + FDSSPKLL  LF W
Sbjct: 60  FSQSNFSIISNLLKNSTITSGSSLESALDQTEIDPDPGLLQAIFECFDSSPKLLHHLFLW 119

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKI-EGDSGSKLASVDSFAILI 730
           AEK+PGF+ SA LF+S++NVLGKAR F+ AW++VLD+I +G  GS L SV++F ILI
Sbjct: 120 AEKKPGFKSSATLFDSMVNVLGKARGFEDAWSLVLDRIGDGMEGSTLVSVNTFVILI 176



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 62/313 (19%), Positives = 129/313 (41%), Gaps = 6/313 (1%)
 Frame = +1

Query: 802  NVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKK----DGIEPNAVVFNPIVDALAEAGK 969
            + + +V T+  L+  Y R    + AI      K        +    +F  ++D+L + G 
Sbjct: 164  STLVSVNTFVILIRRYARAGMPQPAIRTFEFAKSLEQICNSDEETNLFEIMLDSLCKEGH 223

Query: 970  FKEALGMLERFLVLESG--PTLSTYNSLVKGFCKAGDLVGASKILKMMSSRHILPTATTY 1143
             +     L R    + G  P++  YN L+ G+ ++  L  A ++   M    +LP+  TY
Sbjct: 224  VRVVSEYLTRKRETDLGWVPSIKVYNILLNGWFRSRKLKHAERLWLDMKKEGVLPSVVTY 283

Query: 1144 NYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKLDWAVQVSQEMRV 1323
               +  +     ++  + L  +M  VG +P+   ++ ++  L E  +L  A+ + + + +
Sbjct: 284  GTLVEGYCTMRRVERAIQLVDEMKGVGIEPNAKVYNPIIDALGEAGRLKEALGMMERVFL 343

Query: 1324 RGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRMKNELTKHRKFQM 1503
                 +++  + L+  +CK +    A    + +I RG  P   TY       ++ RK + 
Sbjct: 344  CESGPNISMYSSLVKGYCKARDLVGASKILKMMISRGFIPTPTTYNYFFRYFSQFRKIEE 403

Query: 1504 VQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLRTCNDPSKLAKRQ 1683
               L + M    H+          D+ + HL  K + ++ +     L      SK  + +
Sbjct: 404  AMNLYTKMIESGHT---------PDRLTYHLLLKMLFEEER-----LDLAVQISKEMRAR 449

Query: 1684 RPENDVETAERLI 1722
              + D+ T+  LI
Sbjct: 450  GYDRDLATSTMLI 462


>ref|XP_006476197.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At5g11310, mitochondrial-like [Citrus sinensis]
          Length = 551

 Score =  374 bits (961), Expect = e-101
 Identities = 180/310 (58%), Positives = 236/310 (76%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R + +K  E+ WL+MRKENV P VVTYGTLVEGYCR+ RV+RAI LV EM+K+GIEPNA+
Sbjct: 242  RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 301

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            V+N ++D L EAG+F+E  GM+ERFLV E GPT+ TY SLVKG+CKAGDL GASKILKMM
Sbjct: 302  VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 361

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             SR  LP+ TTYNYF RYFSK   + + M+LY KMI+ GY PDRLT+H++LKMLC+ +KL
Sbjct: 362  ISRDFLPSPTTYNYFFRYFSKFGKVDDAMNLYRKMIESGYTPDRLTYHILLKMLCKEDKL 421

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
            D A+QVS+EM+ RG D+DL +STML+HL C+M K++EA A FED+I RG+ P YLT++R+
Sbjct: 422  DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 481

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHLRRKTILQKAKAMSNVLR 1647
             +E  K     + Q L ++M+SVP S +L ++   +  AS   RR T +QKA+ MS++L+
Sbjct: 482  NDEFKKRGMTALAQKLCNVMSSVPRSMELLDSRCKDXNASDARRRPT-MQKAETMSHILK 540

Query: 1648 TCNDPSKLAK 1677
             C DP +L K
Sbjct: 541  ACKDPRELVK 550



 Score =  123 bits (309), Expect = 3e-25
 Identities = 64/116 (55%), Positives = 78/116 (67%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FS+ DF+ I  LLRN  I  G  LES L +T + P P LL AV +HFD SPKLL +LF+W
Sbjct: 46  FSQTDFSVISGLLRNPAISSGPSLESELNQTGVEPEPALLLAVFEHFDHSPKLLHTLFRW 105

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           AE +P F+ SA LFN +I VL KA+EFDSAW ++LDKI G       S D+F ILI
Sbjct: 106 AESKPEFKCSAALFNCMIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILI 161


>ref|XP_006286475.1| hypothetical protein CARUB_v10000508mg [Capsella rubella]
            gi|482555181|gb|EOA19373.1| hypothetical protein
            CARUB_v10000508mg [Capsella rubella]
          Length = 605

 Score =  370 bits (950), Expect = 1e-99
 Identities = 186/329 (56%), Positives = 242/329 (73%), Gaps = 2/329 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ EKLW +M+  NV PTVVTYGTL+EGYCRM RVE A++++ EMK   +E N +
Sbjct: 266  RSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMDVLEEMKMAEMELNFM 325

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            VFNPI+D L EAG+ +EALGM+ERF V ESGPT+ TYNSLVK FCKAGDL GASKILKMM
Sbjct: 326  VFNPIIDGLGEAGRLQEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLAGASKILKMM 385

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             +R + PTATTYN F +YFSKH+  + GM+LY K+I+ G+ PDRLT+HL+LKMLCE  KL
Sbjct: 386  MTRGVDPTATTYNQFFKYFSKHNKTEAGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKL 445

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
              A+QV++EM+ RG D DL ++TML+HL C++  W EA+  FE  + RGI PQY+T++ +
Sbjct: 446  SLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLDMWEEAYEEFEKAVRRGIIPQYITFKMI 505

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHL-RRKTILQKAKAMSNVL 1644
             N L       M + LSS+M+S+PHS KLPNT+ +   A P   RRK+IL +A+AMS+VL
Sbjct: 506  DNGLRSKGMTDMAKRLSSIMSSLPHSKKLPNTYREAVDAPPDKDRRKSILHRAEAMSDVL 565

Query: 1645 RTCNDPSKLAK-RQRPENDVETAERLIEE 1728
            + C +P KL K R   +  V   E LI++
Sbjct: 566  KGCRNPRKLVKMRGTQKKAVRDDESLIDD 594



 Score =  119 bits (298), Expect = 5e-24
 Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FSK D + I  LL N ++ PGS LE AL ET I PS  L++A+ D F SSP LL S++KW
Sbjct: 68  FSKSDLSTISNLLENTDVAPGSSLEPALNETGIEPSVELVQALFDRFSSSPMLLHSVYKW 127

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSG-SKLASVDSFAILI 730
           AE +PGF  S  LF+S+IN L KAREF+ AW ++ D++  D G S L S D+F +L+
Sbjct: 128 AETRPGFTLSPSLFDSVINALCKAREFEIAWALIFDQVRSDGGVSDLVSADTFIVLV 184



 Score = 61.2 bits (147), Expect = 2e-06
 Identities = 68/312 (21%), Positives = 134/312 (42%), Gaps = 14/312 (4%)
 Frame = +1

Query: 733  ALCSCRMRKLKKVEKLWL----QMRKENVMPTVV---TYGTLVEGYCRMCRVERAIELVS 891
            ALC     K ++ E  W     Q+R +  +  +V   T+  LV  Y R   V++AI    
Sbjct: 147  ALC-----KAREFEIAWALIFDQVRSDGGVSDLVSADTFIVLVRRYARAGMVQQAIRAFE 201

Query: 892  EMKK-DGIEPNAV---VFNPIVDALAEAGKFKEALGMLERFL-VLESG--PTLSTYNSLV 1050
              ++ D +  +A    +   ++DAL + G  ++A   LE    +++S   P++  +N L+
Sbjct: 202  FARRYDPVCKSASELKLLEVLLDALCKEGHVRDASMYLEGIRGMMDSNWVPSVRIFNILL 261

Query: 1051 KGFCKAGDLVGASKILKMMSSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYD 1230
             G+ ++  L  A K+ + M + ++ PT  TY   +  + +   ++  M +  +M     +
Sbjct: 262  NGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMDVLEEMKMAEME 321

Query: 1231 PDRLTFHLMLKMLCEGEKLDWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAA 1410
             + + F+ ++  L E  +L  A+ + +   V      + +   L+  FCK      A   
Sbjct: 322  LNFMVFNPIIDGLGEAGRLQEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLAGASKI 381

Query: 1411 FEDLICRGIAPQYLTYQRMKNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASP 1590
             + ++ RG+ P   TY +     +KH K +    L   +    HS          D+ + 
Sbjct: 382  LKMMMTRGVDPTATTYNQFFKYFSKHNKTEAGMNLYFKLIEAGHS---------PDRLTY 432

Query: 1591 HLRRKTILQKAK 1626
            HL  K + +  K
Sbjct: 433  HLILKMLCEDGK 444


>ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317306|gb|EFH47728.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 602

 Score =  368 bits (945), Expect = 5e-99
 Identities = 186/333 (55%), Positives = 242/333 (72%), Gaps = 2/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ EKLW +M+  NV PTVVTYGTL+EGYCRM RVE A+E++ EMK   +E   +
Sbjct: 262  RSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFM 321

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            VFNPI+D L EAG+  EALGM+ERF V ESGPT+ TYNSLVK FCKAGDL GASKILKMM
Sbjct: 322  VFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMM 381

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             +R + PT +TYN+F +YFSKH+  +EGM+LY K+I+ G+ PDRLT+HL+LKMLCE  KL
Sbjct: 382  MTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKL 441

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
              A+QV++EM+ RG D DL ++TML+HL C++    EAF  F++ + RGI PQY+T++ +
Sbjct: 442  SLAIQVNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKMI 501

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHL-RRKTILQKAKAMSNVL 1644
             N L       M + LSSLM+S+PHS KLPNT+ +   A P   RRK+IL +A+AMS+VL
Sbjct: 502  DNGLRSKGMTDMAKRLSSLMSSLPHSKKLPNTYREAVDAPPDKDRRKSILHRAEAMSDVL 561

Query: 1645 RTCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
            + C +P KL K R   +  V   E L ++ N R
Sbjct: 562  KGCRNPRKLVKMRGSHKKGVREDESLTDDLNER 594



 Score =  128 bits (321), Expect = 1e-26
 Identities = 64/116 (55%), Positives = 81/116 (69%)
 Frame = +2

Query: 383 FSKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKW 562
           FSK D + I  LL N N++PGS LESAL ET I PS  L++A+ D   SSP LL S+FKW
Sbjct: 65  FSKTDLSTISNLLENTNVVPGSSLESALDETGIEPSLQLVQALFDRLSSSPMLLHSVFKW 124

Query: 563 AEKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           AE +PGF  S  LF+S+IN L KAREF+ AW++V D++  D GS L S D+F +LI
Sbjct: 125 AEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLI 180


>ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g11310, mitochondrial; Flags: Precursor
            gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis
            thaliana] gi|110738090|dbj|BAF00978.1| hypothetical
            protein [Arabidopsis thaliana]
            gi|332004275|gb|AED91658.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  368 bits (945), Expect = 5e-99
 Identities = 187/333 (56%), Positives = 244/333 (73%), Gaps = 2/333 (0%)
 Frame = +1

Query: 748  RMRKLKKVEKLWLQMRKENVMPTVVTYGTLVEGYCRMCRVERAIELVSEMKKDGIEPNAV 927
            R RKLK+ EKLW +M+  NV PTVVTYGTL+EGYCRM RV+ A+E++ EMK   +E N +
Sbjct: 262  RSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFM 321

Query: 928  VFNPIVDALAEAGKFKEALGMLERFLVLESGPTLSTYNSLVKGFCKAGDLVGASKILKMM 1107
            VFNPI+D L EAG+  EALGM+ERF V ESGPT+ TYNSLVK FCKAGDL GASKILKMM
Sbjct: 322  VFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMM 381

Query: 1108 SSRHILPTATTYNYFLRYFSKHDMIQEGMSLYTKMIDVGYDPDRLTFHLMLKMLCEGEKL 1287
             +R + PT TTYN+F +YFSKH+  +EGM+LY K+I+ G+ PDRLT+HL+LKMLCE  KL
Sbjct: 382  MTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKL 441

Query: 1288 DWAVQVSQEMRVRGFDMDLASSTMLLHLFCKMQKWNEAFAAFEDLICRGIAPQYLTYQRM 1467
              A+QV++EM+ RG D DL ++TML+HL C+++   EAF  F++ + RGI PQY+T++ +
Sbjct: 442  SLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMI 501

Query: 1468 KNELTKHRKFQMVQALSSLMASVPHSTKLPNTHTDEDKASPHL-RRKTILQKAKAMSNVL 1644
             N L       M + LSSLM+S+PHS KLPNT+ +   A P   RRK+IL +A+AMS+VL
Sbjct: 502  DNGLRSKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVDAPPDKDRRKSILHRAEAMSDVL 561

Query: 1645 RTCNDPSKLAK-RQRPENDVETAERLIEEFNAR 1740
            + C +P KL K R   +  V     LI++ N R
Sbjct: 562  KGCRNPRKLVKMRGSHKKAVGEDINLIDDINER 594



 Score =  123 bits (308), Expect(2) = 1e-25
 Identities = 61/115 (53%), Positives = 79/115 (68%)
 Frame = +2

Query: 386 SKPDFTAICALLRNHNILPGSGLESALQETKILPSPPLLEAVIDHFDSSPKLLFSLFKWA 565
           SK D + I  LL N +++PGS LESAL ET I PS  L+ A+ D   SSP LL S+FKWA
Sbjct: 66  SKTDLSTISNLLENTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWA 125

Query: 566 EKQPGFEPSALLFNSIINVLGKAREFDSAWTMVLDKIEGDSGSKLASVDSFAILI 730
           E +PGF  S  LF+S++N L KAREF+ AW++V D++  D GS L S D+F +LI
Sbjct: 126 EMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLI 180



 Score = 22.7 bits (47), Expect(2) = 1e-25
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 333 PLLQRVPIPTIP--TLTLISQNLIS 401
           PL+QR+  P +P  T T   QN +S
Sbjct: 42  PLIQRIQSPAVPDSTCTPPQQNTVS 66