BLASTX nr result
ID: Rheum21_contig00009184
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00009184
(1798 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD20832.1| sigma factor [Spinacia oleracea] 508 e-141
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 461 e-127
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 461 e-127
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 454 e-125
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom... 451 e-124
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 450 e-124
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 450 e-123
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 444 e-122
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe... 438 e-120
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 437 e-120
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 408 e-111
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-... 402 e-109
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 399 e-108
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 397 e-108
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 394 e-107
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 393 e-106
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 392 e-106
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 389 e-105
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 387 e-105
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun... 383 e-103
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 508 bits (1308), Expect = e-141
Identities = 266/516 (51%), Positives = 356/516 (68%), Gaps = 14/516 (2%)
Frame = -3
Query: 1754 RGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSK 1575
RGKE S++LS + + ++SET RKD+L + SSV T E DYSNLE KRS K
Sbjct: 34 RGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLETTISKRSCK 93
Query: 1574 DLNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLG 1395
DL + DRD S+ SV + + SH+ LM N+++LE++++++ ++LEK+ILVQLG
Sbjct: 94 DLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLG 153
Query: 1394 RLGALELFRSYLSRTCKPSELAG--DDQREENVSSD---ATKVIIXXXXXXXXXXXXXXX 1230
RLGAL+LF + LSR S+L G + + NV D K++
Sbjct: 154 RLGALQLFHACLSRIIDMSDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRL 213
Query: 1229 XXRDEIHPAVS---------FHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERI 1077
A H VS A KK K + R+ KNEAEM+ G+KVVA LE++
Sbjct: 214 QASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKV 273
Query: 1076 RTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGL 897
+ +EKE G+ VS+ WAEAAGIDEK+LQ L +GW CRDEL+KS RSLVLY+++ YRGL
Sbjct: 274 KLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGL 333
Query: 896 GIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLG 717
G+A ED++QAGN+G+LQGAERFD TRGY+FSTYVQYWIRKAMS LVSRH RGIK+P TL
Sbjct: 334 GVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLS 393
Query: 716 SAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSST 537
+ IN +QKARK L++S G +PDDV+++K TGLSL+KIKSA CLR+VGS DQ VG + +
Sbjct: 394 TTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINM 453
Query: 536 KFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVG 357
K+ ECT D ++E PE+TVM++HM+ ++ +++ EL+ KER+VL+ RYG GH C SLHEVG
Sbjct: 454 KYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGLEGH-CMSLHEVG 512
Query: 356 VLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
+F+VSKEWIR++EKRALTKLR + N+ NL HY ++
Sbjct: 513 KVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYLNL 548
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 461 bits (1187), Expect = e-127
Identities = 260/530 (49%), Positives = 346/530 (65%), Gaps = 27/530 (5%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLE---MIARK 1587
++GKEA DS++ SF +V ED E+ KD + C S QT E DYS +E M K
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141
Query: 1586 RSSKDLNILMNDV---LDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEK 1416
S DL ++N + D S S A + A S + +L+EN+ ILE+ A++N V LE+
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201
Query: 1415 NILVQLGRLGALELFRSYLSRTCK----------PSELAGDDQREENVSSDATKVIIXXX 1266
+I+VQLGRLGAL+LF+ LSRT K P+E + Q V KV++
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261
Query: 1265 XXXXXXXXXXXXXXR-DEIH----PAVSFH------SVSRAGKKAKTQSRKGAAFKNEAE 1119
+ D I+ P+ + SVS + ++ ++ KNEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 1118 MAHGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSA 939
M+ GVK+VANLERIR +E+E+G S+ +WAEAAG+D+K+LQ++L++GW CRDEL++S
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 938 RSLVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLV 759
SLVLYIA+NYRG+G+A EDI+QAGN+GVLQGAERFD T+GY+FSTYVQYWIRK+MS LV
Sbjct: 382 HSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLV 441
Query: 758 SRHCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRV 579
+RH RG+KIP TL AI IQKARKAL KS+G YPDD +IAKFTGLSL KI+SA CLRV
Sbjct: 442 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 501
Query: 578 VGSTDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRY 399
VGSTDQ+ D E T D S++SPE M++ +++I ++ L+ +ERQ+LVLRY
Sbjct: 502 VGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRY 561
Query: 398 GFGGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
GFG Q KSL E+G FNVSKEWIR++EK AL LR++ +NL HY D+
Sbjct: 562 GFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 611
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 461 bits (1186), Expect = e-127
Identities = 260/530 (49%), Positives = 346/530 (65%), Gaps = 27/530 (5%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLE---MIARK 1587
++GKEA DS++ SF +V ED E+ KD + C S QT E DYS +E M K
Sbjct: 32 VQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 91
Query: 1586 RSSKDLNILMNDV---LDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEK 1416
S DL ++N + D S S A + A S + +L+EN+ ILE+ A++N V LE+
Sbjct: 92 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 151
Query: 1415 NILVQLGRLGALELFRSYLSRTCK----------PSELAGDDQREENVSSDATKVIIXXX 1266
+I+VQLGRLGAL+LF+ LSRT K P+E + Q V KV++
Sbjct: 152 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 211
Query: 1265 XXXXXXXXXXXXXXR-DEIH----PAVSFH------SVSRAGKKAKTQSRKGAAFKNEAE 1119
+ D I+ P+ + SVS + ++ ++ KNEAE
Sbjct: 212 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 271
Query: 1118 MAHGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSA 939
M+ GVK+VANLERIR +E+E+G S+ +WAEAAG+D+K+LQ++L++GW CRDEL++S
Sbjct: 272 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 331
Query: 938 RSLVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLV 759
SLVLYIA+NYRG+G+A EDI+QAGN+GVLQGAERFD T+GY+FSTYVQYWIRK+MS LV
Sbjct: 332 HSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLV 391
Query: 758 SRHCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRV 579
+RH RG+KIP TL AI IQKARKAL KS+G YPDD +IAKFTGLSL KI+SA CLRV
Sbjct: 392 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 451
Query: 578 VGSTDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRY 399
VGSTDQ+ D E T D S++SPE M++ +++I ++ L+ +ERQ+LVLRY
Sbjct: 452 VGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRY 511
Query: 398 GFGGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
GFG Q KSL E+G FNVSKEWIR++EK AL LR++ +NL HY D+
Sbjct: 512 GFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 561
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 454 bits (1168), Expect = e-125
Identities = 249/513 (48%), Positives = 339/513 (66%), Gaps = 13/513 (2%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLE-MIARKRS 1581
+RG+E S+ LSF++V+ E+ ET+ KD L YTC S+ Q + S +E + +R
Sbjct: 33 VRGREGSFSSAGLSFLSVISEECETSSKDPLKVYTCPSASPQLLDDGLSEMEEKMNPRRM 92
Query: 1580 SKDLNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQ 1401
SK + M D D+ SF S SHY +L++N+++LE+ A++ +LEK IL+Q
Sbjct: 93 SKSGSANMID----DKEYSFMSSAGLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQ 148
Query: 1400 LGRLGALELFRSYLSRTCKPSELAG-DDQREENVSSDAT--KVIIXXXXXXXXXXXXXXX 1230
LGRLGAL+LF LSRT K S D E + T K I+
Sbjct: 149 LGRLGALKLFEICLSRTLKTSSFLDLSDIPTEPIEKHKTERKNIVRSGKKEEQKSRKRTS 208
Query: 1229 XXRDEIHPAVSFHSVSRAGKK---------AKTQSRKGAAFKNEAEMAHGVKVVANLERI 1077
+ + + KK + ++SR+ KNEAEM+ GVKV+A+LER+
Sbjct: 209 YDSKKFSGTLPVKQMREGFKKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERL 268
Query: 1076 RTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGL 897
+ +EKE G+ ++R WAEAAG+DEK+LQ++L +GW C+DEL++S RSLVLY+A+NYRGL
Sbjct: 269 KVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGL 328
Query: 896 GIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLG 717
G+A +D++QAGN+G+LQGAERFD +RGY+FSTYVQYWIRK+MS LV++H RGIKIP TL
Sbjct: 329 GVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLS 388
Query: 716 SAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSST 537
AIN IQKARKA S+ YPDD +IAK TGLSL KI SASRCLRVVGS D + + S+
Sbjct: 389 KAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAG 448
Query: 536 KFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVG 357
+ E T D +VE+PE +VMR+HMK +I ++ LN++E++VL LRYG KSL E+G
Sbjct: 449 TYMEFTPDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIG 508
Query: 356 VLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
LF+VSKEWIR++EK ALTKLRN+ + +NL HY
Sbjct: 509 RLFHVSKEWIRKIEKNALTKLRNEESNKNLSHY 541
>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
Length = 848
Score = 451 bits (1160), Expect = e-124
Identities = 250/512 (48%), Positives = 337/512 (65%), Gaps = 28/512 (5%)
Frame = -3
Query: 1703 VPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMI------ARKRSSKDLNIL--MNDV 1548
+P + KD L AY S+ QT E +E + + S L ++ +++
Sbjct: 337 LPSSGVLSLKDPLKAYAS-SAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHEL 395
Query: 1547 LDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGRLGALELFR 1368
+ D+S S S A SHY +LMEN+ +LE+ A+++ + LE+ IL+QLGR GAL+LF
Sbjct: 396 IGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFN 455
Query: 1367 SYLSRTCKPSEL---------AGDDQREENVSSDATKVII-----XXXXXXXXXXXXXXX 1230
+ LSRT K S + +GD +V +++
Sbjct: 456 TCLSRTLKASNILDLSDVPANSGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPT 515
Query: 1229 XXRDEIHPAVSFH------SVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERIRTA 1068
++ P+ + H VS A + + ++SR+ +NEAEM+ GVKVVANLERIRT
Sbjct: 516 IISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTT 575
Query: 1067 MEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGLGIA 888
+E+E GR S+ WAEAAG+ EK+LQ+ LR+GW CRDEL++S RSLVLY A+NYRGLGIA
Sbjct: 576 LEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIA 635
Query: 887 PEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLGSAI 708
ED+IQAG++GVLQGAERFD TRGY+FSTYVQ+WIRK++S +V+RH RGI++P TL AI
Sbjct: 636 HEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAI 695
Query: 707 NSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSSTKFS 528
IQKARKAL KS+G YPD+ IAKFTGLSL KI+SA++C+RVVGS DQ +GD + K+
Sbjct: 696 VQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYL 755
Query: 527 ECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVGVLF 348
E D SV SPE+TVMR+HMKE+I +++N L+A+ERQV+VLRYG G KSL E+G LF
Sbjct: 756 EFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLF 815
Query: 347 NVSKEWIRRVEKRALTKLRNDNNKRNLIHYFD 252
+VSKEWIRR+E +A+ KLR+ RNL HY D
Sbjct: 816 HVSKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 450 bits (1158), Expect = e-124
Identities = 243/518 (46%), Positives = 343/518 (66%), Gaps = 18/518 (3%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSS 1578
+RG+E +S++LSF++ + EDS + +D + AYTC QT E DYS E I +K +S
Sbjct: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
Query: 1577 KDLNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQL 1398
+ +D S ++S +++LMEN+ +LE A+++++ LE+ IL QL
Sbjct: 92 ---------CIGQDAS---------SRSDFRLLMENLDVLESTFADSDALRLEREILQQL 133
Query: 1397 GRLGALELFRSYLSRTCKPSELA--GDDQREENVSSDAT-----KVIIXXXXXXXXXXXX 1239
G+LGAL+LF S+LSR K S + D EE +D+ K+++
Sbjct: 134 GKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKT 193
Query: 1238 XXXXXRDEIHPAVSFHSVS-RAGKKAKT----------QSRKGAAFKNEAEMAHGVKVVA 1092
+S S + + G K T + R+ +NEAEM+ GV+VVA
Sbjct: 194 ARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVA 253
Query: 1091 NLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAK 912
NLERI+T +EKE G+ S+ WA+AAG+ E++L++ L +GW CR+ELIKS R LVL++A+
Sbjct: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
Query: 911 NYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKI 732
NYRGLGI D++QAGNVGVLQGAERFD TRGYKFSTYVQYWIRK++S +V+RH RGIKI
Sbjct: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Query: 731 PPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVG 552
P L I+ IQKARKAL S+G YP+D++IAK+TGLSL +I+SAS CLR+VGS DQ +G
Sbjct: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
Query: 551 DWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKS 372
D + K+ E D+SV+SP+ VMR+HMK+++ ++ L+++ERQVLVLRYG H+ KS
Sbjct: 434 DCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKS 493
Query: 371 LHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
L E+G LF+VSKEWIR++EK+A+TKLR+ R+L H+
Sbjct: 494 LEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 450 bits (1157), Expect = e-123
Identities = 238/518 (45%), Positives = 341/518 (65%), Gaps = 18/518 (3%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSS 1578
+RG+E +S++LSF++ + EDS + +D + AYTC QT E DYS E I +K +S
Sbjct: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
Query: 1577 KDLNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQL 1398
+ +D S ++S +++LMEN+ +LE A+++++ LE+ IL QL
Sbjct: 92 ---------CIGQDAS---------SRSDFRLLMENLDVLESTFADSDALRLEREILQQL 133
Query: 1397 GRLGALELFRSYLSRTCKPSELA--GDDQREENVSSDAT-----KVIIXXXXXXXXXXXX 1239
G+LGAL+LF S+LSR K S + D EE D+ K+++
Sbjct: 134 GKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMDDSRDYHMGKILVPSKRKGKRKLKT 193
Query: 1238 XXXXXR-----------DEIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVA 1092
+ + + ++ A + ++ R+ +NEAEM+ GV+VVA
Sbjct: 194 ARVSEESIETYLLSLPSEALQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVA 253
Query: 1091 NLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAK 912
NLERI+T +EKE G+ + WA+AAG+ E++L++ L +GW CR+ELIKS R LVL++A+
Sbjct: 254 NLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
Query: 911 NYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKI 732
NYRGLGI D++QAGNVGVLQGAERFD TRGYKFSTYVQYWIRK++S +V+RH RGIKI
Sbjct: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Query: 731 PPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVG 552
P L I+ IQKARKAL S+G YP+D++IAK+TGLSL +I+SAS CLR+VGS DQ +G
Sbjct: 374 PCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIG 433
Query: 551 DWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKS 372
D + K+ E D+SV+SP+ VMR+HMK+++ ++ L+++ERQVLVLRYG H+ KS
Sbjct: 434 DCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKS 493
Query: 371 LHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
L E+G LF+VSKEWIR++EK+A+TKLR+ R+L H+
Sbjct: 494 LEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHF 531
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 444 bits (1141), Expect = e-122
Identities = 254/529 (48%), Positives = 349/529 (65%), Gaps = 27/529 (5%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIA---RK 1587
+RG+EA S+LSF++V+ E+ + +D L Y S QT E ++S E K
Sbjct: 33 VRGREATSYQSRLSFLSVISEEGDIAHRDPLKTYA-YSYAVQTVENEHSQGEGFKVNFGK 91
Query: 1586 RSSKDLNILMNDVLDRDESISFA-SVLAYNKSHYQVLMENVHILEDRIANANSVELEKNI 1410
RS LNI+ + + E I + S S + +L+EN++ILE A++++ +LE++I
Sbjct: 92 RSHFGLNIIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDI 151
Query: 1409 LVQLGRLGALELFRSYLSRTCKPS----------ELAGDDQREENVSSDATKVIIXXXXX 1260
L+QLG+LGAL+LF + L+RT + + E+ G+ ++ KV++
Sbjct: 152 LLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKK 211
Query: 1259 XXXXXXXXXXXXRDEIHPAVSFHSVSR------------AGKKA-KTQSRKGAAFKNEAE 1119
R H + S SR +GKKA K++SR+ +NEAE
Sbjct: 212 EERKSRRERASARKG-HKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAE 270
Query: 1118 MAHGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSA 939
MA G+KV+A+LE+IRT +E+E R VS+ WAEAAG+D K+LQ++L +GW CRDELIKS
Sbjct: 271 MARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKST 330
Query: 938 RSLVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLV 759
RSLVLY A+NYRG GIA ED++QAGN+GVL+GAERFD TRGY+FSTYVQYWIRK+MS +V
Sbjct: 331 RSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIV 390
Query: 758 SRHCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRV 579
SR RGI+IP TL AI IQKARKAL SNG YPDD +IAK+TGLSL KI+SASRCLRV
Sbjct: 391 SRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRV 450
Query: 578 VGSTDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRY 399
VGS DQ +G+ + K+ E D SV+SPE VMR+HM +++ ++ L+++ERQVL+LR+
Sbjct: 451 VGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRF 510
Query: 398 GFGGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFD 252
G +Q KSL E+G F+VSKEW+RR+EKR +T+LRN+ RNL HY +
Sbjct: 511 GLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559
>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 438 bits (1126), Expect = e-120
Identities = 242/523 (46%), Positives = 344/523 (65%), Gaps = 21/523 (4%)
Frame = -3
Query: 1757 LRGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMI--ARKR 1584
+RG+E +S++LSF++V+ E+ E + KD L YT S+ Q E S LE + A +R
Sbjct: 33 VRGREGSFNSARLSFLSVISEEGEASSKDPLKVYTFPSASPQILEDGVSELEEVKTAFRR 92
Query: 1583 SSKDLNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILV 1404
K + V + + IS + A SH+ +L++N+++LE+ A ++ ++LEK IL+
Sbjct: 93 VPKSFSDNQMPVAE-GKFISSKGLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILL 151
Query: 1403 QLGRLGALELFRSYLSRTCKPSELAG----------DDQREENVSSDATKVIIXXXXXXX 1254
QL RLGAL+LF LSRT K S + + E ++ ++I+
Sbjct: 152 QLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEE 211
Query: 1253 XXXXXXXXXXR----DEIHPAVSFHSVSR----AGKKAKT-QSRKGAAFKNEAEMAHGVK 1101
+ + P + + + +GK+A +SR+ KNEAEM+ GVK
Sbjct: 212 RRSRKRTSDNAIVSSNSLPPKTIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVK 271
Query: 1100 VVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLY 921
V+A+LERI+ +EKE G+ ++R WAEAAG+ EK+L + LR+GW C+DELI+S RSLVLY
Sbjct: 272 VIADLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLY 331
Query: 920 IAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRG 741
+A+NYRGLG+A +D++QAGN+G+LQGAERFD +RGY+FSTYVQYWIRK+MS LV++H RG
Sbjct: 332 LARNYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARG 391
Query: 740 IKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQ 561
++IP TL AIN IQKARKA S+ YPDD +IAK TGLSL +I+SAS CLRVVGS D
Sbjct: 392 VQIPFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDH 451
Query: 560 NVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQ 381
+ + S + E T D S++SPE TVMR+HMK++I +++ LN +ERQVLVLRYG +
Sbjct: 452 KMWESSDGTYMEFTPDTSLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYD 511
Query: 380 CKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFD 252
KSL E+G LF+VSKEWIR++EK+AL KLR + + + L HY +
Sbjct: 512 PKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKYLSHYLN 554
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 437 bits (1123), Expect = e-120
Identities = 241/526 (45%), Positives = 340/526 (64%), Gaps = 27/526 (5%)
Frame = -3
Query: 1754 RGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETD---YSNLEMIARKR 1584
RG EA ++ ++LSF++VV E+ + K S ++ C SS AQ E D L+M K
Sbjct: 33 RGMEASVNQARLSFLSVVSEEGDILNKHSFKSFAC-SSAAQNVENDCLQMERLKMNVDKT 91
Query: 1583 SSKDLNILM-NDVLDRDESISFASVLAYNK--SHYQVLMENVHILEDRIANANSVELEKN 1413
S +N +M ND + +E IS + + S L++N+ LE +A+ ++++LE++
Sbjct: 92 SHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKLVADLDALKLERD 151
Query: 1412 ILVQLGRLGALELFRSYLSRTCK----------PSELAGDDQREENVSSDATKVIIXXXX 1263
IL+QLGRLGALE F + LSRT + P+E G+ + + + D T +
Sbjct: 152 ILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGES-KTDGMLGDLTGKTVVRTG 210
Query: 1262 XXXXXXXXXXXXXRDEIHPAVSFHSVSRA-----------GKKAKTQSRKGAAFKNEAEM 1116
D S S+ + + + SR+ +NEA+M
Sbjct: 211 KKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSSSSSRRSLIARNEAKM 270
Query: 1115 AHGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSAR 936
GVKV ++LERIRT +E+E G+ VS+ WAEA G+D+K+LQ++L++GW CRDELIK+
Sbjct: 271 TRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTH 330
Query: 935 SLVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVS 756
SLVLYIA+NYRG+GIA ED+IQAGN+G+LQGAERFD TRGY+FSTYVQYWIRK+M +V
Sbjct: 331 SLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVE 390
Query: 755 RHCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVV 576
RH RGI+IP L +IN IQKARKAL S+G YPDD ++AKFTGLSL KI+SA +CLRVV
Sbjct: 391 RHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVV 450
Query: 575 GSTDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYG 396
S DQ +G+ K+SE D S+++PE VMR+HM+EEI +++ L+++E+QV+VLRYG
Sbjct: 451 ASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYG 510
Query: 395 FGGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
F +Q KSL E+G LF VSKE +R++EK+ + KLR++ +RNL Y
Sbjct: 511 FKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRNLSRY 556
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
Length = 555
Score = 408 bits (1048), Expect = e-111
Identities = 236/525 (44%), Positives = 324/525 (61%), Gaps = 26/525 (4%)
Frame = -3
Query: 1754 RGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSK 1575
+G+EA D ++ S + D E + D TCLS T E+ R
Sbjct: 31 KGREALYDPAR-SLKPFITGDCEPSHSDPFRVQTCLSDPQLWTSDTSVTTEIKTRNGRGS 89
Query: 1574 DLNILMNDVLDRDESIS----FASVLAYNKS-HYQVLMENVHILEDRIANANSVELEKNI 1410
N+ D+ IS + L KS H+ +LM+N+ +LE+ A++ LE++I
Sbjct: 90 PSNVY-GDIGSHKIGISPDGEKPTYLNTTKSLHFSLLMKNLDLLENMFADSEMSRLERDI 148
Query: 1409 LVQLGRLGALELFRSYLSRTCK----------PSELAGDDQREENVSSDATKVIIXXXXX 1260
LVQL +LGALE F + LSRT P EL + ++++ V + KV++
Sbjct: 149 LVQLEKLGALEFFHTCLSRTHHSSTFPKVLDVPRELIKEVEKDDLVGNAIDKVVVRSRKK 208
Query: 1259 XXXXXXXXXXXXRDEIHPAVSFHSVS----------RAGKKAK-TQSRKGAAFKNEAEMA 1113
V H+ + +GK+ + +++++ KNEAEM+
Sbjct: 209 QERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQKIAKNEAEMS 268
Query: 1112 HGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARS 933
GVK+VA LERIR+ +E+E GR + SWAEAAGI++K LQ+RL +GW CRDEL+KS RS
Sbjct: 269 RGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRS 328
Query: 932 LVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSR 753
LVLY+A+NYRGLG+A ED+IQAGN+GVLQGA RFD TRGYKFSTYVQYWIRK++S LV++
Sbjct: 329 LVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQ 388
Query: 752 HCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVG 573
H RG++IP T+ IN I KARK L +S+G +P D +IAKFTGLS +I AS+CLRVVG
Sbjct: 389 HARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVG 448
Query: 572 STDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGF 393
S DQ VGD S K E T DKS+ SPE TVMR+ + + + ++ L+ KE+QV+ R+G
Sbjct: 449 SIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGL 508
Query: 392 GGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
HQ KSL E+G L+ VSKEWIRR+E+RALTKLRN + +++ HY
Sbjct: 509 ETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHITHY 553
>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 402 bits (1033), Expect = e-109
Identities = 229/532 (43%), Positives = 321/532 (60%), Gaps = 31/532 (5%)
Frame = -3
Query: 1754 RGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSK 1575
+G+EA +S +LSF + + E+ E+ +++L YTCLS QT+ D NLE I +K
Sbjct: 33 KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAK 92
Query: 1574 DLNILMNDVLD------RDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKN 1413
L + + D S S+ S + +LMEN+ +LE+ + + LE++
Sbjct: 93 SLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERD 152
Query: 1412 ILVQLGRLGALELFRSYLSRTCKPSEL---------AGDDQREENVSSD----------- 1293
I++QL +LGALE F + LSRT K S G+D ++D
Sbjct: 153 IVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAK 212
Query: 1292 -----ATKVIIXXXXXXXXXXXXXXXXXRDEIHPAVSFHSVSRAGKKAKTQSRKGAAFKN 1128
+ K +++IH + F SR K + + R+ N
Sbjct: 213 KAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVF---SRK-KSSNSSKRRLIVAIN 268
Query: 1127 EAEMAHGVKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELI 948
EAEM+ GVKVVANLERIR +EKE GR SM WAEAA +D K LQK+L++G CRDEL+
Sbjct: 269 EAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELL 328
Query: 947 KSARSLVLYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMS 768
+S SLV+++AK YR G+ ED++QAG +GVLQG ERFD RG++ STY+QYWIRK+MS
Sbjct: 329 RSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMS 388
Query: 767 VLVSRHCRGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRC 588
+V+R+ RGI+IP +L AIN IQKARK L S Y DD DIA+ TGL L K++ AS C
Sbjct: 389 RVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDD-DIARATGLPLAKVRVASNC 447
Query: 587 LRVVGSTDQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLV 408
L+VVGS DQ +GD + K+ E T D S++SPE TV RK MK++I ++ L ++ERQVLV
Sbjct: 448 LKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQVLV 507
Query: 407 LRYGFGGHQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFD 252
LRYG + KSL E+G L ++SKEW+R++EK+A+TKL+N+ ++L HY D
Sbjct: 508 LRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD 559
>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
Length = 545
Score = 399 bits (1024), Expect = e-108
Identities = 212/521 (40%), Positives = 332/521 (63%), Gaps = 20/521 (3%)
Frame = -3
Query: 1751 GKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKD 1572
G+E + ++LS ++ V E+ ET +KD + SS + E D E+ + +
Sbjct: 34 GREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRS 93
Query: 1571 LNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGR 1392
L+ + ++++D + L + + H+ +LMEN+ ILE+ A++ ++ LEK+I+++L +
Sbjct: 94 LSSV-HEIIDNTQ-------LPFGEPHFGLLMENLGILEETFADSEAMRLEKDIVLKLEK 145
Query: 1391 LGALELFRSYLSRTCKPS----------ELAGDDQREENVSSDATKVIIXXXXXXXXXXX 1242
LGALELF L+R+ S E + +R V + KV++
Sbjct: 146 LGALELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKRKENRTRR 205
Query: 1241 XXXXXXRDEIHPAVSFHSVSRAG----------KKAKTQSRKGAAFKNEAEMAHGVKVVA 1092
++ ++ G + + T +R+ + E EM+ GVKV+A
Sbjct: 206 KQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQREVEMSKGVKVLA 265
Query: 1091 NLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAK 912
LE+++TA+E++ + VS+ SWAEA+G+DE +LQ++L +G+ CRDELI+S RSLVLY A+
Sbjct: 266 ELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFAR 325
Query: 911 NYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKI 732
YRG+GIA ED++Q G +GVLQGAERFD TRGY+FSTYVQYWIRK+MS +V+R+ RGI I
Sbjct: 326 KYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITI 385
Query: 731 PPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVG 552
P ++ AI+ IQKARK L+ ++ YPDD +IAK TGLSL++I+SAS C+R+V S +Q +G
Sbjct: 386 PWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMG 445
Query: 551 DWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKS 372
D ++ D S+ESPE TVM++H++++I +++ L+++ERQ+L+LR+G HQ KS
Sbjct: 446 D-RGIEYMGYMADMSIESPEETVMKQHIRKDIHDILQSLDSRERQILILRFGLNDHQPKS 504
Query: 371 LHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
L +G ++ VSKEWIR++EK+ALTKLRN+ N L +Y D+
Sbjct: 505 LEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSKLNYYLDL 545
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 397 bits (1020), Expect = e-108
Identities = 227/503 (45%), Positives = 321/503 (63%), Gaps = 10/503 (1%)
Frame = -3
Query: 1730 SSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKDLNILMND 1551
+++ SF++ V E+S +KD L A C SS T E + L + K+ NI
Sbjct: 82 ATRWSFLSSVKEESRIYQKDPLKA--CASSAPYTAENVFLEL------KDPKE-NI---G 129
Query: 1550 VLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGRLGALELF 1371
V ++S S S+L YN +L +N+ LE+ +S +E++I++Q+G+LGA +LF
Sbjct: 130 VGSAEKSCSSRSMLQYN-----LLAKNLLALEETFVALDSARMERDIMLQMGKLGAADLF 184
Query: 1370 RSYLSRTCKPS---------ELAGDDQREENVSSDATKVIIXXXXXXXXXXXXXXXXXRD 1218
++ LSR+ S EL G ++ S K+
Sbjct: 185 KTCLSRSRGSSVASCLSDTTELVGTTPNQQVFVSSRRKLKKKARRSTVTAENGDQGSLPM 244
Query: 1217 EIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERIRTAMEKEMGREVS 1038
+ + V R + K + ++ KNEAEM+ GVK+VA++ERIRT +E+E G+ S
Sbjct: 245 GLRTTWNNIDVPRVRRPPKYRKKRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVAS 304
Query: 1037 MRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGLGIAPEDIIQAGNV 858
+ WAEAAG++EKLL + L YGW CRDEL+KS RSLVL++A+NYRGLGIA ED+IQAG V
Sbjct: 305 LSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYV 364
Query: 857 GVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLGSAINSIQKARKAL 678
GVLQGAERFD TRGYKFSTYVQYWIRK+MS++VSRH RG+ IP ++ IN IQKARK L
Sbjct: 365 GVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTL 424
Query: 677 QKSNG-TYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSSTKFSECTVDKSVE 501
+ S+G YP D DI+K T LS++KI++A++CL+VVGS ++ VGD STKF E T D ++E
Sbjct: 425 KTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTME 484
Query: 500 SPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVGVLFNVSKEWIRR 321
SPE VMR+ + +I +++ L +E+QV+VLRYG ++ KSL E+G L VSKEWIR+
Sbjct: 485 SPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRK 544
Query: 320 VEKRALTKLRNDNNKRNLIHYFD 252
+E+RA+ KLR+ N +L +Y +
Sbjct: 545 IERRAMAKLRDQPNAEDLRYYLN 567
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
Length = 551
Score = 394 bits (1012), Expect = e-107
Identities = 223/526 (42%), Positives = 332/526 (63%), Gaps = 26/526 (4%)
Frame = -3
Query: 1748 KEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKDL 1569
+E + ++LSF + E+ E +KD + SS +T E D E + + L
Sbjct: 40 RETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSL 99
Query: 1568 NILMNDVLDRDESISFASVLAYNKS-------HYQVLMENVHILEDRIANANSVELEKNI 1410
+ + + ++D + + F V +K H+++LMEN+ +LE+ ++ ++ LEK I
Sbjct: 100 SSV-HKMIDNTQ-MPFGEVSTVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAI 157
Query: 1409 LVQLGRLGALELFRSYLSRTCKPSELAG-----DDQREENVSSDATKVIIXXXXXXXXXX 1245
++QLG+LGALELF LSR+ S ++ DD +++ V + K
Sbjct: 158 ILQLGKLGALELFNVCLSRSLGTSLVSNYADKVDDYKDKVVVQSSKK------------K 205
Query: 1244 XXXXXXXRDEIHPAVSFHSV--------------SRAGKKAKTQSRKGAAFKNEAEMAHG 1107
R+ + AVS S+ S + T++++ K EAEM+ G
Sbjct: 206 ENKTRRKREFVSTAVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKG 265
Query: 1106 VKVVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLV 927
VKV+A LE+IRTA+E++ R S+ +WAEA+G+DEK+LQK L G+ C+DELI+S RSLV
Sbjct: 266 VKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLV 325
Query: 926 LYIAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHC 747
LY+A+ YRG+GIA +D++QAG VGVLQGAERFD TRGYKFSTYVQYWIRK++ +V+R+
Sbjct: 326 LYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYA 385
Query: 746 RGIKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGST 567
RGI IP +L AIN IQKARKA++ ++ PDD +IAK TGLSL+KIKSAS CLR+V S
Sbjct: 386 RGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASI 445
Query: 566 DQNVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGG 387
DQ VGD+ ++ E D ++ESPE VM++HM++++ +++ LN +ER++L LR+G
Sbjct: 446 DQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLND 505
Query: 386 HQCKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
+Q +SL ++G LF VSKE IR++EK+ALTKL+N+ L +Y D+
Sbjct: 506 NQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYLDL 551
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 393 bits (1010), Expect = e-106
Identities = 228/521 (43%), Positives = 317/521 (60%), Gaps = 22/521 (4%)
Frame = -3
Query: 1754 RGKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSK 1575
+G+E D ++ S + D E + D TCLS T E R
Sbjct: 31 KGRETLYDPAR-SLKPFINGDCEPSHSDPFRVQTCLSDPQLWTSDASVTTETKTRNGRGS 89
Query: 1574 DLNILMNDVLDRDESISFASVLAYNKS-HYQVLMENVHILEDRIANANSVELEKNILVQL 1398
N+ D+ + L KS H+ +LM+N+ +LE+ A++ LE++ILVQL
Sbjct: 90 PSNVY-GDIGSYKIDGEKPTYLNTTKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQL 148
Query: 1397 GRLGALELFRSYLSRTCK----------PSELAGDDQREENVSSDATKVIIXXXXXXXXX 1248
+LGALE F + LSRT P EL + ++++ V + KV++
Sbjct: 149 EKLGALEFFHTCLSRTHHSSSFPKVLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERM 208
Query: 1247 XXXXXXXXRDEIHPAVSFHSVS----------RAGKKAK-TQSRKGAAFKNEAEMAHGVK 1101
V H+ + +GK+ +++++ KNEAEM+ GVK
Sbjct: 209 SRRKRASRNANDIITVQPHTKNIQEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVK 268
Query: 1100 VVANLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLY 921
+VA LERIR+ +E+E G+ + SWA+AAGI++K LQ+ L +GW CRDEL+KS RSLVLY
Sbjct: 269 LVAQLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLY 328
Query: 920 IAKNYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRG 741
+A+NYRGLG+A ED+IQAGN+GVLQGA RFD TRGYKFSTYVQYWIRK++S LV++H RG
Sbjct: 329 LARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARG 388
Query: 740 IKIPPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQ 561
++IP T+ IN I KARK L +S+G +P D +IAKFTGLS +I AS+CLRVVGS DQ
Sbjct: 389 VRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQ 448
Query: 560 NVGDWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQ 381
VGD + K E T DKSV SPE VMR+ + + + ++ L+ KE+QV+ R+G HQ
Sbjct: 449 KVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQ 508
Query: 380 CKSLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHY 258
KSL E+G L+ VSKEWIRR+E+RALTKLR+ + +++ HY
Sbjct: 509 RKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHITHY 549
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 392 bits (1008), Expect = e-106
Identities = 218/506 (43%), Positives = 321/506 (63%), Gaps = 12/506 (2%)
Frame = -3
Query: 1730 SSKLSFMNVVPEDSET-TRKDSLIAYTCLSSVAQTTETD-YSNLEMIARKRSSKDLNILM 1557
+++ SF++ + E+S T T D A C S+ TT + Y L+ + + + +
Sbjct: 84 ATRCSFLSSLKEESRTYTHNDPFKACACASATPYTTPNNVYVELK---DPKENIGVGFVG 140
Query: 1556 NDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGRLGALE 1377
+ ++S S S+L YN +L +N+ LE+ + +S+ +E++I+ Q+G+LGA E
Sbjct: 141 EQMSSAEKSYSSRSMLQYN-----LLAKNLIALEETFSALDSLGMERDIMFQMGKLGATE 195
Query: 1376 LFRSYLSRT---------CKPSELAGDDQREENVSSDATKVIIXXXXXXXXXXXXXXXXX 1224
F++ LSR+ + ++L G +++ S K+
Sbjct: 196 FFKTCLSRSRGSSITSCLSETTDLVGTTPKQQVFVSSRRKLKKKASRSSVTGENGDQGSL 255
Query: 1223 RDEIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERIRTAMEKEMGRE 1044
E+ + V R + K + ++ +NEAEM+ GVK+VA++ERIRT +E+E G+
Sbjct: 256 PIELRTTWNNIDVPRVRRPPKYRKKRERISRNEAEMSTGVKIVADMERIRTQLEEESGKV 315
Query: 1043 VSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGLGIAPEDIIQAG 864
S+ WAEAAG++EKLL + L YGW CRDEL+KS RSLVL++A+NYRGLGIA ED+IQAG
Sbjct: 316 ASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAG 375
Query: 863 NVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLGSAINSIQKARK 684
VGVLQGAERFD RGYKFSTYVQYWIRK+MS++VSRH RG+ IP ++ IN IQKARK
Sbjct: 376 FVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARK 435
Query: 683 ALQKSNG-TYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSSTKFSECTVDKS 507
L+ S+G YP D +I+K T LS++KI++A++CL+VVGS + VGD STKF E T D
Sbjct: 436 TLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTM 495
Query: 506 VESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVGVLFNVSKEWI 327
+ESPE VMR+ + ++ +++ L +E+QV+VLRYG ++ KSL E+G L VSKEWI
Sbjct: 496 MESPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWI 555
Query: 326 RRVEKRALTKLRNDNNKRNLIHYFDI 249
RR+E+RA+ KLR+ N +L +Y +
Sbjct: 556 RRIERRAMAKLRDQPNAEDLRYYLKL 581
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 389 bits (998), Expect = e-105
Identities = 221/503 (43%), Positives = 316/503 (62%), Gaps = 10/503 (1%)
Frame = -3
Query: 1730 SSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKDLNILMND 1551
+++ SF++ V E+S + DSL A C S T + N + K +++
Sbjct: 82 ATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQ----NNVYVELKDPKENIG----- 132
Query: 1550 VLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGRLGALELF 1371
V + S S S+L YN +L +N+ LE+ +SV +E++I++Q+G+LGA ELF
Sbjct: 133 VGSAERSYSSRSMLQYN-----LLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELF 187
Query: 1370 RSYLSR-------TC--KPSELAGDDQREENVSSDATKVIIXXXXXXXXXXXXXXXXXRD 1218
++ LSR +C +EL ++ S KV
Sbjct: 188 KTCLSRYRGSSITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI 247
Query: 1217 EIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERIRTAMEKEMGREVS 1038
+ + V R + K + ++ +NE EM+ GVK+VA++ERIRT +E+E G+ S
Sbjct: 248 GLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVAS 307
Query: 1037 MRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGLGIAPEDIIQAGNV 858
+ WA AAG++EKLL + L YGW CRDEL+KS RSLVL++A+NYRG+GIA ED+IQAG V
Sbjct: 308 LSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYV 367
Query: 857 GVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLGSAINSIQKARKAL 678
GVLQGAERFD TRGYKFSTYVQYWIRK+MS +VSRH RG+ IP ++ IN IQKARK L
Sbjct: 368 GVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTL 427
Query: 677 QKSNG-TYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSSTKFSECTVDKSVE 501
+ S+G Y D +IAK TG S++KI++A++CL+VVGS D+ VGD +TKF E T D ++E
Sbjct: 428 KTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTME 487
Query: 500 SPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVGVLFNVSKEWIRR 321
SPE VMR+ + +I +++ L +E+QV+VLRYG ++ KSL E+G LF VSKEWIR+
Sbjct: 488 SPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRK 547
Query: 320 VEKRALTKLRNDNNKRNLIHYFD 252
+E+RA+ KLR+ N +L +Y +
Sbjct: 548 IERRAMAKLRDQPNAEDLRYYLN 570
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
thaliana] gi|133778870|gb|ABO38775.1| At3g53920
[Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 387 bits (994), Expect = e-105
Identities = 221/503 (43%), Positives = 315/503 (62%), Gaps = 10/503 (1%)
Frame = -3
Query: 1730 SSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKDLNILMND 1551
+++ SF++ V E+S + DSL A C S T + N + K +++
Sbjct: 82 ATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQ----NNVYVELKDPKENIG----- 132
Query: 1550 VLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGRLGALELF 1371
V + S S S+L YN +L +N+ LE+ +SV +E++I++Q+G+LGA ELF
Sbjct: 133 VGSAERSYSSRSMLQYN-----LLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELF 187
Query: 1370 RSYLSR-------TC--KPSELAGDDQREENVSSDATKVIIXXXXXXXXXXXXXXXXXRD 1218
++ LSR +C +EL ++ S KV
Sbjct: 188 KTCLSRYRGSSITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI 247
Query: 1217 EIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVANLERIRTAMEKEMGREVS 1038
+ + V R + K + ++ +NE EM+ GVK+VA++ERIRT +E+E G+ S
Sbjct: 248 GLRTTWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVAS 307
Query: 1037 MRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAKNYRGLGIAPEDIIQAGNV 858
+ WA AAG++EKLL + L YGW CRDEL+KS RSLVL++A+NYRGLGIA ED+IQAG V
Sbjct: 308 LSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYV 367
Query: 857 GVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKIPPTLGSAINSIQKARKAL 678
GVLQGAERFD TRGYKFSTYVQYWIRK+MS +VSRH RG+ IP ++ IN IQKARK L
Sbjct: 368 GVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTL 427
Query: 677 QKSNG-TYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVGDWSSTKFSECTVDKSVE 501
+ S+G Y D +IAK TG S++KI++A++CL+VVGS D+ VGD +TKF E T D ++E
Sbjct: 428 KTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTME 487
Query: 500 SPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFGGHQCKSLHEVGVLFNVSKEWIRR 321
SPE VMR+ + +I +++ L +E+QV+VLRYG ++ KSL E+G L VSKEWIR+
Sbjct: 488 SPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRK 547
Query: 320 VEKRALTKLRNDNNKRNLIHYFD 252
+E+RA+ KLR+ N +L +Y +
Sbjct: 548 IERRAMAKLRDQPNAEDLRYYLN 570
>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
[Medicago truncatula]
Length = 549
Score = 383 bits (983), Expect = e-103
Identities = 213/522 (40%), Positives = 322/522 (61%), Gaps = 21/522 (4%)
Frame = -3
Query: 1751 GKEAHLDSSKLSFMNVVPEDSETTRKDSLIAYTCLSSVAQTTETDYSNLEMIARKRSSKD 1572
G+E + +LS ++ V E+ ET +KD + SS + E D + + K
Sbjct: 42 GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFA-FSSALEAPEKDLLQGGELTKVNKGKR 100
Query: 1571 LNILMNDVLDRDESISFASVLAYNKSHYQVLMENVHILEDRIANANSVELEKNILVQLGR 1392
+++++D S L + +SH+ +LMEN+ +LE+ A++ ++ LEKNI++QL +
Sbjct: 101 SLSSVHEMIDN-------SHLPFEESHFGLLMENLGVLEETFADSEALRLEKNIILQLEK 153
Query: 1391 LGALELFRSYLSR----------TCKPSELAGDDQREENVSSDATKVIIXXXXXXXXXXX 1242
LGALELF L+ T K E +++R V KVI+
Sbjct: 154 LGALELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENRRR 213
Query: 1241 XXXXXXR----------DEIHPAVSFHSVSRAGKKAKTQSRKGAAFKNEAEMAHGVKVVA 1092
D + S + + T++++ + E EM+ GVKV+A
Sbjct: 214 KRGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLA 273
Query: 1091 NLERIRTAMEKEMGREVSMRSWAEAAGIDEKLLQKRLRYGWQCRDELIKSARSLVLYIAK 912
LE+IRTA+E++ + VS+ SWAE +G+DEK+LQ++L +G+ CRDELI+S RSLVLY A+
Sbjct: 274 ELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFAR 333
Query: 911 NYRGLGIAPEDIIQAGNVGVLQGAERFDQTRGYKFSTYVQYWIRKAMSVLVSRHCRGIKI 732
YRG+GIA ED++Q G +GVLQGAERFD T+GY+FSTYVQYWIRK+MS +V+++ RGI +
Sbjct: 334 KYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITV 393
Query: 731 PPTLGSAINSIQKARKALQKSNGTYPDDVDIAKFTGLSLEKIKSASRCLRVVGSTDQNVG 552
P ++ AI+ IQKARK L+ + YP+D++IAK TGLSL+KI SAS CLR V S + +
Sbjct: 394 PWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI- 452
Query: 551 DWSSTKFSECTVDKSVESPERTVMRKHMKEEIMEVMNELNAKERQVLVLRYGFG-GHQCK 375
++ D S+ESPE TVM++H+K++I +++ L+++ERQ+++LR+G HQ K
Sbjct: 453 -----EYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPK 507
Query: 374 SLHEVGVLFNVSKEWIRRVEKRALTKLRNDNNKRNLIHYFDI 249
SL +G +F VSKEWIR++EK+ALTKLRN+ N L +Y D+
Sbjct: 508 SLEYIGKIFKVSKEWIRKIEKKALTKLRNETNISKLNYYLDL 549