BLASTX nr result
ID: Rheum21_contig00008892
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00008892
(501 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 110 3e-22
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 110 3e-22
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 109 4e-22
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 108 6e-22
tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family... 108 1e-21
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 107 1e-21
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 107 1e-21
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 107 2e-21
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 107 2e-21
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 106 3e-21
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 106 3e-21
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 106 3e-21
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 104 1e-20
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 104 1e-20
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 102 7e-20
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 101 9e-20
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 101 9e-20
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 101 1e-19
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 100 3e-19
gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 99 4e-19
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 110 bits (274), Expect = 3e-22
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHLFNASV+G+D+KI GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1745 GIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRL 1804
Query: 316 HEVPALNYRPDPIMS 272
+VP L+Y DPI+S
Sbjct: 1805 QQVPELSYGLDPIIS 1819
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 110 bits (274), Expect = 3e-22
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHLFNASV+G+D+KI GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1309 GIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRL 1368
Query: 316 HEVPALNYRPDPIMS 272
+VP L+Y DPI+S
Sbjct: 1369 QQVPELSYGLDPIIS 1383
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 109 bits (272), Expect = 4e-22
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM S+LMLASFE+TADHLFNA+V G+D+KI GV+E IIMG+PMQ+GTG+LKVIQR
Sbjct: 1321 GIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKVIQRV 1380
Query: 316 HEVPALNYRPDPIMS 272
P L Y PDP++S
Sbjct: 1381 DPPPMLRYGPDPVLS 1395
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 108 bits (271), Expect = 6e-22
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
G+ KMKDSVLMLASFEKT DHLFNASV G+D+KI GV+E IIMG+PM +GTGM K+ QR
Sbjct: 1316 GVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRV 1375
Query: 316 HEVPALNYRPDPIMSQA 266
+V LNY+PDPI+ +A
Sbjct: 1376 EQV-ELNYQPDPIILEA 1391
>tpg|DAA37177.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 336
Score = 108 bits (269), Expect = 1e-21
Identities = 52/75 (69%), Positives = 63/75 (84%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKTA+HLFNAS +G+ ++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 262 GIAKMKSSVLMLASFEKTAEHLFNASYSGRQDQIEGVSECIIMGIPMQLGTGILKVRQRL 321
Query: 316 HEVPALNYRPDPIMS 272
VP Y+PDPI+S
Sbjct: 322 DHVPEFKYQPDPILS 336
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 107 bits (268), Expect = 1e-21
Identities = 51/75 (68%), Positives = 65/75 (86%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKT++HLFNAS +G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1323 GIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQRL 1382
Query: 316 HEVPALNYRPDPIMS 272
+P L Y+PDPI+S
Sbjct: 1383 DHLPELKYQPDPILS 1397
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 107 bits (268), Expect = 1e-21
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKT++HLFNAS +G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1317 GIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1376
Query: 316 HEVPALNYRPDPIMS 272
VP Y+PDPI+S
Sbjct: 1377 DHVPEFKYQPDPILS 1391
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 107 bits (267), Expect = 2e-21
Identities = 53/75 (70%), Positives = 61/75 (81%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHLFNASV G+++KI GVSE IIMG+PMQ+GTGM+KV QR
Sbjct: 1104 GIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQIGTGMIKVRQRV 1163
Query: 316 HEVPALNYRPDPIMS 272
P L+Y P PI+S
Sbjct: 1164 DVPPMLSYGPKPILS 1178
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 107 bits (266), Expect = 2e-21
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
G+ KMKDSVLMLASFEKT DHLFNASV G+D+KI GV+E IIMG+PM +GTGM K+ QR
Sbjct: 1316 GVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQRV 1375
Query: 316 HEVPALNYRPDPIM 275
V LNY+PDP+M
Sbjct: 1376 EHV-ELNYQPDPMM 1388
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 106 bits (265), Expect = 3e-21
Identities = 50/75 (66%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKTA+HLFNAS +G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1315 GIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1374
Query: 316 HEVPALNYRPDPIMS 272
+P Y+PDPI++
Sbjct: 1375 DHLPEFKYQPDPILA 1389
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 106 bits (265), Expect = 3e-21
Identities = 50/75 (66%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKTA+HLFNAS +G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1247 GIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1306
Query: 316 HEVPALNYRPDPIMS 272
+P Y+PDPI++
Sbjct: 1307 DHLPEFKYQPDPILA 1321
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 106 bits (265), Expect = 3e-21
Identities = 50/75 (66%), Positives = 64/75 (85%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKTA+HLFNAS +G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1309 GIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1368
Query: 316 HEVPALNYRPDPIMS 272
+P Y+PDPI++
Sbjct: 1369 DHLPEFKYQPDPILA 1383
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 104 bits (259), Expect = 1e-20
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKT++HLFNAS G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1042 GIAKMKSSVLMLASFEKTSEHLFNASYAGREDQIDGVSECIIMGIPMQLGTGILKVRQRL 1101
Query: 316 HEVPALNYRPDPIMS 272
+P Y+P PIMS
Sbjct: 1102 ESLPEFKYQPAPIMS 1116
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 104 bits (259), Expect = 1e-20
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLMLASFEKT++HLFNAS G++++I GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1173 GIAKMKSSVLMLASFEKTSEHLFNASYAGREDQIDGVSECIIMGIPMQLGTGILKVRQRL 1232
Query: 316 HEVPALNYRPDPIMS 272
+P Y+P PIMS
Sbjct: 1233 ESLPEFKYQPAPIMS 1247
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 102 bits (253), Expect = 7e-20
Identities = 51/75 (68%), Positives = 60/75 (80%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHL++A+V G+D+KI GVSE IIMG+PMQ+GTG+LKV QR
Sbjct: 1309 GIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRV 1368
Query: 316 HEVPALNYRPDPIMS 272
P LNY D I+S
Sbjct: 1369 DPPPVLNYGSDSIIS 1383
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 101 bits (252), Expect = 9e-20
Identities = 53/76 (69%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHLFNASV G+D++I GVSE IIMG+PM +GTG+LK+ QR
Sbjct: 1329 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1388
Query: 316 HEVPALNY-RPDPIMS 272
P L Y PDPIMS
Sbjct: 1389 AVPPMLKYGAPDPIMS 1404
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 101 bits (252), Expect = 9e-20
Identities = 53/76 (69%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KM SVLMLASFEKTADHLFNASV G+D++I GVSE IIMG+PM +GTG+LK+ QR
Sbjct: 1322 GIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRD 1381
Query: 316 HEVPALNY-RPDPIMS 272
P L Y PDPIMS
Sbjct: 1382 AVPPMLKYGAPDPIMS 1397
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 101 bits (251), Expect = 1e-19
Identities = 46/75 (61%), Positives = 62/75 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMKDSVLMLASFEKT DHLF+A++ G+ +KI GVSE IIMG+PM +GTG+ K+ Q+
Sbjct: 1323 GIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKV 1382
Query: 316 HEVPALNYRPDPIMS 272
++P L+Y P P++S
Sbjct: 1383 EKLPKLSYGPTPLLS 1397
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 99.8 bits (247), Expect = 3e-19
Identities = 48/75 (64%), Positives = 61/75 (81%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI KMK SVLMLASFEKT +HLFNAS +G++++I GVSE IIMG+PM +G+G+LKV QR
Sbjct: 1318 GIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRL 1377
Query: 316 HEVPALNYRPDPIMS 272
+P NY+PD I+S
Sbjct: 1378 DHLPEFNYQPDAIIS 1392
>gb|EMT10482.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 832
Score = 99.4 bits (246), Expect = 4e-19
Identities = 45/74 (60%), Positives = 61/74 (82%)
Frame = -3
Query: 496 GISKMKDSVLMLASFEKTADHLFNASVTGKDEKIVGVSESIIMGVPMQVGTGMLKVIQRA 317
GI+KMK SVLML+SFE+ ++HLFNAS G++++I GVSE IIMG+P Q+GTG+LKV QR
Sbjct: 758 GIAKMKSSVLMLSSFERASEHLFNASYAGREDQIEGVSECIIMGIPKQLGTGILKVRQRL 817
Query: 316 HEVPALNYRPDPIM 275
++P Y+PDPI+
Sbjct: 818 QDLPEFKYQPDPIL 831