BLASTX nr result
ID: Rheum21_contig00006417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00006417
(312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ07978.1| hypothetical protein PRUPE_ppa025445mg [Prunus pe... 116 3e-24
ref|XP_004304747.1| PREDICTED: pentatricopeptide repeat-containi... 114 2e-23
gb|EXB94227.1| hypothetical protein L484_004418 [Morus notabilis] 113 3e-23
ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi... 112 4e-23
emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera] 112 4e-23
gb|EOY11075.1| Mitochondrial editing factor 20 [Theobroma cacao] 106 3e-21
ref|XP_006432929.1| hypothetical protein CICLE_v10000988mg [Citr... 103 3e-20
ref|XP_004516355.1| PREDICTED: pentatricopeptide repeat-containi... 96 4e-18
gb|ESW22011.1| hypothetical protein PHAVU_005G119000g [Phaseolus... 92 5e-17
ref|XP_006406547.1| hypothetical protein EUTSA_v10022209mg [Eutr... 92 7e-17
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi... 91 1e-16
ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis th... 91 2e-16
gb|ESW22006.1| hypothetical protein PHAVU_005G118500g [Phaseolus... 90 3e-16
ref|XP_006592780.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|XP_006299548.1| hypothetical protein CARUB_v10015722mg [Caps... 88 1e-15
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ... 86 5e-15
gb|EMT31807.1| hypothetical protein F775_12997 [Aegilops tauschii] 84 3e-14
ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [S... 81 1e-13
ref|XP_002314675.1| pentatricopeptide repeat-containing family p... 79 8e-13
ref|XP_006646428.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
>gb|EMJ07978.1| hypothetical protein PRUPE_ppa025445mg [Prunus persica]
Length = 480
Score = 116 bits (291), Expect = 3e-24
Identities = 59/103 (57%), Positives = 76/103 (73%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L+ G QIHAR+ K ++ N+ V TT +HFYAS+ D AR+VFDEM V+N+V+WNA++TG
Sbjct: 125 LLVGSQIHARIIKHDVVSNILVQTTLVHFYASNKDFVSARRVFDEMAVKNSVTWNAMITG 184
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
YCSQ E+ RD L+LF+ ML DD GV+PTDTTMV VLS
Sbjct: 185 YCSQ-----RESARDALVLFRDML-DDVCGVKPTDTTMVCVLS 221
>ref|XP_004304747.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Fragaria vesca subsp. vesca]
Length = 476
Score = 114 bits (284), Expect = 2e-23
Identities = 57/103 (55%), Positives = 77/103 (74%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L+ G++I AR+ KEG++ N+ V TT +HFYAS+ D+G ARK+FDEM RN+V+WNA++TG
Sbjct: 124 LVVGREIQARIVKEGIISNILVQTTLLHFYASNKDLGSARKMFDEMSERNSVTWNAMITG 183
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Y SQ E+ RD L+LF+ ML D +GV+P DTTMV VLS
Sbjct: 184 YSSQ-----RESARDALLLFRDMLYGD-SGVKPNDTTMVCVLS 220
>gb|EXB94227.1| hypothetical protein L484_004418 [Morus notabilis]
Length = 466
Score = 113 bits (282), Expect = 3e-23
Identities = 57/101 (56%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G QIHAR+ + G++ N+ V TT IHFYAS+ D+ AR+VFDEM VRN+V+WNA++TGYCS
Sbjct: 127 GSQIHARIMRHGIVSNIMVQTTLIHFYASNKDIDSARRVFDEMLVRNSVTWNAMITGYCS 186
Query: 192 Q-GDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Q G C D L+LF+ ML DD G +PTDTT+V +LS
Sbjct: 187 QKGSAC------DALLLFRDML-DDVCGAKPTDTTIVCILS 220
>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
protein product [Vitis vinifera]
Length = 471
Score = 112 bits (281), Expect = 4e-23
Identities = 58/103 (56%), Positives = 76/103 (73%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L EG+QIHAR+ K+G+ N+ V TT IHFYA++ D+ AR VFDEM R++V+WNA++TG
Sbjct: 122 LWEGRQIHARILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITG 181
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
YCSQ + RD L+LF++ML D GV+PTDTTMV VLS
Sbjct: 182 YCSQRGKV-VCYARDALVLFRAMLV-DACGVKPTDTTMVCVLS 222
>emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
Length = 437
Score = 112 bits (281), Expect = 4e-23
Identities = 58/103 (56%), Positives = 76/103 (73%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L EG+QIHAR+ K+G+ N+ V TT IHFYA++ D+ AR VFDEM R++V+WNA++TG
Sbjct: 122 LWEGRQIHARILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITG 181
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
YCSQ + RD L+LF++ML D GV+PTDTTMV VLS
Sbjct: 182 YCSQRGKV-VCYARDALVLFRAMLV-DACGVKPTDTTMVCVLS 222
>gb|EOY11075.1| Mitochondrial editing factor 20 [Theobroma cacao]
Length = 479
Score = 106 bits (265), Expect = 3e-21
Identities = 55/100 (55%), Positives = 73/100 (73%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+QIH + K G+M NL V TT IHFYA + D+ AR+VFDEM R++V+WNA++ GYCS
Sbjct: 127 GRQIHVKALKFGVMSNLLVETTLIHFYAKNKDILSARRVFDEMTERSSVTWNAIIKGYCS 186
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Q + E R+ L+LF+ ML +D +GV+PTDTTMV VLS
Sbjct: 187 QKERAK-ECCREALVLFRDML-NDVSGVKPTDTTMVCVLS 224
>ref|XP_006432929.1| hypothetical protein CICLE_v10000988mg [Citrus clementina]
gi|568835223|ref|XP_006471678.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g18970-like [Citrus sinensis]
gi|557535051|gb|ESR46169.1| hypothetical protein
CICLE_v10000988mg [Citrus clementina]
Length = 480
Score = 103 bits (256), Expect = 3e-20
Identities = 51/100 (51%), Positives = 69/100 (69%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+QIH V K G M N+ VATT IHFYAS+ D+ ++VFD+M +R++ +WNA++ GYCS
Sbjct: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNNDISSGKRVFDQMPMRSSATWNAMINGYCS 187
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Q + + L LF+ ML D +GV+PTDTTMV VLS
Sbjct: 188 QSKKAK-DCAFNALFLFRDMLV-DVSGVKPTDTTMVCVLS 225
>ref|XP_004516355.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cicer arietinum]
Length = 473
Score = 96.3 bits (238), Expect = 4e-18
Identities = 51/100 (51%), Positives = 66/100 (66%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G Q+H + K G N+ V TT IHFY+++GD+ ARKVFDEM RN VSWNA++TGYCS
Sbjct: 127 GTQLHTLIIKLGFCSNVLVPTTLIHFYSNNGDIKSARKVFDEMPERNVVSWNAMITGYCS 186
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
D N +N+ + + LFK ML RP DTT+V +LS
Sbjct: 187 LKDE-NRKNIVNGMCLFKDMLMI----CRPNDTTVVCLLS 221
>gb|ESW22011.1| hypothetical protein PHAVU_005G119000g [Phaseolus vulgaris]
gi|561023282|gb|ESW22012.1| hypothetical protein
PHAVU_005G119000g [Phaseolus vulgaris]
Length = 476
Score = 92.4 bits (228), Expect = 5e-17
Identities = 47/100 (47%), Positives = 72/100 (72%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+Q+H+ + K G+ N+ V+TT I+FY+S+ D+ AR+VFDEM +R +V+WNA++TGY S
Sbjct: 127 GRQLHSLIVKHGVGSNILVSTTKIYFYSSNKDIISARQVFDEMPIRTSVTWNAMITGYSS 186
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
+ NM+ + L LF ML D G++PTDTT+V++LS
Sbjct: 187 LKEG-NMQYAVNALSLFNDMLV-DVRGIKPTDTTVVALLS 224
>ref|XP_006406547.1| hypothetical protein EUTSA_v10022209mg [Eutrema salsugineum]
gi|557107693|gb|ESQ48000.1| hypothetical protein
EUTSA_v10022209mg [Eutrema salsugineum]
Length = 472
Score = 92.0 bits (227), Expect = 7e-17
Identities = 50/101 (49%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQ-VATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYC 188
G+ +H V K GL+ + + TT +HFYA +GD+ ARKVFDEM R +V+WNA++ GYC
Sbjct: 130 GRIVHGMVVKLGLLSESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYC 189
Query: 189 SQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
S D N N R ++LF+ + GVRPTDTTMV VLS
Sbjct: 190 SLKDKGN-HNARKAMILFRRFSCCGD-GVRPTDTTMVCVLS 228
>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like isoform X1 [Glycine max]
gi|571502173|ref|XP_006594919.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g18970-like isoform X2 [Glycine max]
Length = 477
Score = 91.3 bits (225), Expect = 1e-16
Identities = 50/100 (50%), Positives = 68/100 (68%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+Q+HAR+ K G N+ V TT I+FYAS+ D+ AR+VFDEM R+ V+WNA++TGY S
Sbjct: 127 GRQLHARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNAMITGYSS 186
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Q + N + + L LF ML D ++PT TT+VSVLS
Sbjct: 187 QKEG-NKKYALNALSLFIDMLVDVSV-IKPTGTTIVSVLS 224
>ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein
product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis
thaliana] gi|332642654|gb|AEE76175.1| mitochondrial
editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 90.5 bits (223), Expect = 2e-16
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQ-VATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYC 188
G+ +H V K G + + + TT +HFYA +GD+ ARKVFDEM R +V+WNA++ GYC
Sbjct: 130 GRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYC 189
Query: 189 SQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
S D N N R ++LF+ +GVRPTDTTMV VLS
Sbjct: 190 SHKDKGN-HNARKAMVLFRRFSCCG-SGVRPTDTTMVCVLS 228
>gb|ESW22006.1| hypothetical protein PHAVU_005G118500g [Phaseolus vulgaris]
Length = 465
Score = 90.1 bits (222), Expect = 3e-16
Identities = 46/100 (46%), Positives = 71/100 (71%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+Q+H+ + K G+ N+ V+TT I+FY+S+ D+ AR+VFDEM +R +V+WNA++TGY S
Sbjct: 125 GRQLHSLIVKHGVGSNILVSTTKIYFYSSNKDIISARRVFDEMPMRTSVTWNAMITGYSS 184
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
+ N + + + LF ML D G++PTDTT+V+VLS
Sbjct: 185 LKEG-NKQYAVNAISLFNDMLV-DVRGIKPTDTTVVAVLS 222
>ref|XP_006592780.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like isoform X1 [Glycine max]
Length = 493
Score = 88.2 bits (217), Expect = 1e-15
Identities = 48/100 (48%), Positives = 69/100 (69%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYCS 191
G+Q+HA + K G+ N+ V TT ++FYAS+ D+ +RKVFDEM R+ V+WNA++TGY S
Sbjct: 145 GRQLHALIVKHGVESNIVVPTTKVYFYASNKDIISSRKVFDEMPRRSTVTWNAMITGYSS 204
Query: 192 QGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
+ N + + L LF ML D +G++PT TT+VSVLS
Sbjct: 205 LKEG-NKKYALNALYLFIDMLI-DVSGIKPTATTIVSVLS 242
>ref|XP_006299548.1| hypothetical protein CARUB_v10015722mg [Capsella rubella]
gi|482568257|gb|EOA32446.1| hypothetical protein
CARUB_v10015722mg [Capsella rubella]
Length = 474
Score = 88.2 bits (217), Expect = 1e-15
Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQ-VATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYC 188
G+ +H V K G + + + TT +HFYA +GD+ ARKVFDE+ R V+WNA++ GYC
Sbjct: 129 GRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEIPERTCVTWNAMIGGYC 188
Query: 189 SQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
S D N N R ++LF+ GVRPTDTTMV VLS
Sbjct: 189 SHKDKGN-HNARKAMILFRRFSCCG-NGVRPTDTTMVCVLS 227
>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331126|gb|EFH61545.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 471
Score = 85.9 bits (211), Expect = 5e-15
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +3
Query: 12 GKQIHARVFKEGLMLNLQ-VATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYC 188
G+ +H V K G + + + TT +H YA +GD+ ARKVFDEM R +V+WNA++ GYC
Sbjct: 129 GRIVHGMVKKLGFLYESELIGTTLLHCYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYC 188
Query: 189 SQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVL 308
S D N N R ++LF+ +GVRPTDTTMV VL
Sbjct: 189 SHKDKGN-HNARKAMILFRRFSCCG-SGVRPTDTTMVCVL 226
>gb|EMT31807.1| hypothetical protein F775_12997 [Aegilops tauschii]
Length = 1042
Score = 83.6 bits (205), Expect = 3e-14
Identities = 46/103 (44%), Positives = 64/103 (62%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L EGKQ+H V K GL+ ++ V+ + IH YA+ GD+ CAR VFDEM V++ VSWN+L+ G
Sbjct: 580 LKEGKQMHNHVLKFGLLSDIFVSNSLIHLYAACGDLCCARSVFDEMLVKDVVSWNSLICG 639
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Y + +++VL LFK M + GVR TM V+S
Sbjct: 640 YSRR------NRLKEVLKLFKLM---HDEGVRADKVTMAKVVS 673
>ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein
SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/101 (41%), Positives = 65/101 (64%)
Frame = +3
Query: 9 EGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTGYC 188
EG+Q+H+ V K G +L++ V+ + IH YA+ GD+ CAR +FDEM V++ VSWN+L+ GY
Sbjct: 428 EGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYS 487
Query: 189 SQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
+ ++VL LF+ M A++ V+ TMV V+S
Sbjct: 488 QR------NRFKEVLALFELMQAEE---VQADKVTMVKVIS 519
>ref|XP_002314675.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222863715|gb|EEF00846.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 845
Score = 78.6 bits (192), Expect = 8e-13
Identities = 40/103 (38%), Positives = 59/103 (57%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L EG Q+H + K G ++ V + IHFY G++ C R+VFD+M RN VSW +L+ G
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Y +G + ++ + LF M+ E G+RP TMV V+S
Sbjct: 215 YAKRGCY------KEAVSLFFEMV---EVGIRPNSVTMVGVIS 248
>ref|XP_006646428.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Oryza brachyantha]
Length = 1035
Score = 77.8 bits (190), Expect = 1e-12
Identities = 45/103 (43%), Positives = 63/103 (61%)
Frame = +3
Query: 3 LIEGKQIHARVFKEGLMLNLQVATTCIHFYASSGDMGCARKVFDEMHVRNAVSWNALLTG 182
L EG+QIH + K GL+ ++ V+ + IH YA+ G++ AR VFDEM V++ VSWN+L+ G
Sbjct: 572 LKEGEQIHDHIMKLGLLQDIFVSNSLIHLYAACGNICYARSVFDEMSVKDVVSWNSLICG 631
Query: 183 YCSQGDHCNMENVRDVLMLFKSMLADDETGVRPTDTTMVSVLS 311
Y CN +DVL LF+ M GV+ TMV V+S
Sbjct: 632 Y----SQCN--RFKDVLALFELM---HNEGVKADKVTMVKVVS 665