BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00006272
         (863 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   317   4e-84
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   313   4e-83
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun...   313   5e-83
gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus pe...   313   7e-83
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I...   313   7e-83
gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family pro...   312   1e-82
ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II a...   311   1e-82
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a...   308   2e-81
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|5...   307   3e-81
gb|EMJ20951.1| hypothetical protein PRUPE_ppa024345mg [Prunus pe...   306   5e-81
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   305   1e-80
gb|AFK41303.1| unknown [Medicago truncatula]                          303   7e-80
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   303   7e-80
ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [A...   300   3e-79
ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, I...   300   5e-79
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   300   5e-79
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps...   300   6e-79
ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, I...   299   1e-78
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...   298   1e-78
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...   297   3e-78

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  317 bits (812), Expect = 4e-84
 Identities = 152/194 (78%), Positives = 178/194 (91%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  SEEE++RLFRIRKT+MQML DRGY V D+EIN+TK+QF+ K+GEN+K+EDL +NKA+
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           R DSSDQIYVFFPEE KVGVK +KTYT RMKS+NVFR +LVVQQ+LTPFA+TCI E+S +
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+LT EEKK+LL+RYTVKETQLPRIQ++DP+ARY+G
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  313 bits (803), Expect = 4e-83
 Identities = 151/194 (77%), Positives = 176/194 (90%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  S+EE+ RLFRIR+T+MQML DRGY V D+EIN++K QFI K+GEN+K+EDL +NKA 
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RNDSSDQIYVFFP+E KVGVK +KTYT RMKS+NVFR +LVVQQ+LTPFA+TCI E+S +
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+LT+EEKK+LL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score =  313 bits (802), Expect = 5e-83
 Identities = 151/194 (77%), Positives = 177/194 (91%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SE+E+TRLFRIR+T+MQML DR YLV D+E+N+TK QF +KYGEN+K+EDL +NK+R
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RNDS DQIYVFFPEE KVGVK +KTY  RMKS+NV R VLVVQQ+LTPFA+TCI+E+S +
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+LT+EEKK+LL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
          Length = 206

 Score =  313 bits (801), Expect = 7e-83
 Identities = 150/194 (77%), Positives = 175/194 (90%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+  EEE+TRL+R+RKT+MQML DR YLV D+EIN+T+ QF  KYGEN+K+EDLT+NK +
Sbjct: 1   MVYPEEEITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           R+DSSDQIYVFFPEEPKVGVK +KTYT RMKS+NV R VLV QQ+LTPFAKTCI+E+S +
Sbjct: 61  RSDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEH +LT EEKK+LL+RYTVKETQLPRIQ+ DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like isoform 1 [Solanum lycopersicum]
           gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           isoform 2 [Solanum lycopersicum]
          Length = 206

 Score =  313 bits (801), Expect = 7e-83
 Identities = 146/194 (75%), Positives = 180/194 (92%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  SEEE+++LFR+RKTLM+ML+DRGYLV D+EIN++K+QF+ KYGEN+K+EDL + KA+
Sbjct: 1   MALSEEELSKLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVIQKAK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RN+SSDQIYVFFPEEPKVGVK +KTYTERMK ++VF+ +L+VQQ+LTPFA+TCI+E+S +
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAE+LVNIK HVL+PEHQLL+ EEKK+LL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPEHQLLSPEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  312 bits (799), Expect = 1e-82
 Identities = 149/194 (76%), Positives = 176/194 (90%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ S++E+ RLFRIRKT+MQML DRGY V D+EI +TK QFI KYGEN+K+EDL +NK +
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RND+SDQIYVFFP+E KVGVK +KTYT RMKS+NVFR VLVVQQ+LTPFA+TCI E+S +
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQE+ELLVN+KEH LVPEHQ+LT+EEKK+LLQRYTVKETQLPRIQ++DP+ARYYG
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  311 bits (798), Expect = 1e-82
 Identities = 147/194 (75%), Positives = 179/194 (92%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  SEEE++RLFR+RKTLM+ML+DRGYLV D+EIN++K+QF+ KYGEN+K+EDL + KA+
Sbjct: 1   MALSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVLQKAK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RN+SSDQIYVFFPEEPKVGVK +KTYTERMK ++VF+ +L+VQQ+LTPFA+TCI+E+S +
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAE+LVNIK HVL+PEH LL+ EEKKSLL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPEHLLLSPEEKKSLLERYTVKETQLPRIQITDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  308 bits (789), Expect = 2e-81
 Identities = 145/194 (74%), Positives = 178/194 (91%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  SEEE++RLFR+RKTLM+ML+DRGYLV D+EIN++K +F+ KYGEN+K+EDL + KA+
Sbjct: 1   MTLSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RN+SSDQIYVFFPEEPKVGVK +KTYTERMK ++VF+ +L+VQQ+LTPFA+TCI+E+S +
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAE+LVNIK HVL+P+HQ LT EEKK+LL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_002331171.1| predicted protein [Populus trichocarpa]
           gi|566176743|ref|XP_006381734.1| DNA-directed RNA
           polymerase family protein [Populus trichocarpa]
           gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 206

 Score =  307 bits (787), Expect = 3e-81
 Identities = 148/194 (76%), Positives = 172/194 (88%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M  +EEE+ RL RIRKT+MQML DRGY V D+EI +T+ QF  KYG N+K+EDL +NK +
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RNDSSDQIYVFFPEE KVGVK +KTYT RMKS+NVFR +LVVQQ+LTPFA+TCI E+S +
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+L++EEKK+LL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>gb|EMJ20951.1| hypothetical protein PRUPE_ppa024345mg [Prunus persica]
          Length = 206

 Score =  306 bits (785), Expect = 5e-81
 Identities = 144/194 (74%), Positives = 174/194 (89%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+  EEE+TRL+R+R+T+MQML DR YLV D+EIN+T+ QF  KYGEN+K+EDLT+NK +
Sbjct: 1   MVLPEEEITRLYRVRRTVMQMLRDRKYLVGDFEINMTREQFKAKYGENMKREDLTINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RNDS+DQ+YVFFPEEPKVGVK IKTYT RMKSDNV R +LV QQ++TP A+TCI+E+S +
Sbjct: 61  RNDSTDQLYVFFPEEPKVGVKTIKTYTNRMKSDNVARAILVTQQNMTPMARTCISEISSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FH+EVFQE EL+VN+ EHVLVPEHQLLT+EEKK+LL+RYTVKETQLPRIQL DPVA+YYG
Sbjct: 121 FHMEVFQEPELMVNVTEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQLTDPVAKYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG V+KIIRPSE
Sbjct: 181 LKRGQVMKIIRPSE 194


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  305 bits (782), Expect = 1e-80
 Identities = 147/195 (75%), Positives = 175/195 (89%), Gaps = 1/195 (0%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+TRLFRIRKT+ QML DRGY V D+EI++T+ QF  KYGEN+K+ED+ +NK++
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           RNDSSDQIYVFFPEE KVG+K +KTYT RMKS+NVFR +LVVQQ+LTPFA+ C++E + +
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 373 -FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYY 549
            FHLEVFQEAELLVNIK+HVLVPEHQLL +EEKK+LL+RYTVKETQLPRIQ+ DPVARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 550 GLKRGHVVKIIRPSE 594
           GLKRG VVKIIRPSE
Sbjct: 181 GLKRGQVVKIIRPSE 195


>gb|AFK41303.1| unknown [Medicago truncatula]
          Length = 206

 Score =  303 bits (775), Expect = 7e-80
 Identities = 144/194 (74%), Positives = 172/194 (88%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+TRL+RIRKT+MQML DR YLV D+E+N++K+ F DKYGEN+K+EDL +NK +
Sbjct: 1   MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           ++  SDQIYVFFPEE KVGVK +KTYT RM S+NV+R +LV Q SLTPFAKTC++E++ +
Sbjct: 61  KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+L D EKK+LL+RYTVKETQLPRIQ+ DPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  303 bits (775), Expect = 7e-80
 Identities = 144/194 (74%), Positives = 172/194 (88%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+TRL+RIRKT+MQML DR YLV D+E+N++K+ F DKYGEN+K+EDL +NK +
Sbjct: 205 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 264

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           ++  SDQIYVFFPEE KVGVK +KTYT RM S+NV+R +LV Q SLTPFAKTC++E++ +
Sbjct: 265 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 324

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+L D EKK+LL+RYTVKETQLPRIQ+ DPVARYYG
Sbjct: 325 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG 384

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 385 LKRGQVVKIIRPSE 398


>ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [Amborella trichopoda]
           gi|548863022|gb|ERN20377.1| hypothetical protein
           AMTR_s00068p00034280 [Amborella trichopoda]
          Length = 206

 Score =  300 bits (769), Expect = 3e-79
 Identities = 139/190 (73%), Positives = 172/190 (90%)
 Frame = +1

Query: 25  EEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKARRNDS 204
           +++ ++LFRIR+TLMQML DRGYLV D+EIN+TK QFI+K+G+ +KK+DL +NK  RN+ 
Sbjct: 5   DDQTSKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDLVINKTMRNNP 64

Query: 205 SDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGRFHLE 384
           S+QIYVFFPEE KVGVK +KTYTERMKS+NVFR +LV+QQ+LTPFA+ C+ E+S +FHLE
Sbjct: 65  SEQIYVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCVQEISAKFHLE 124

Query: 385 VFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYGLKRG 564
           +FQE+ELLVNIKEHVLVPEHQ+LT EEKK+LL+RYT+KETQLPRIQ+ DP+ARYYGLKRG
Sbjct: 125 IFQESELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRG 184

Query: 565 HVVKIIRPSE 594
            VVKIIRPSE
Sbjct: 185 QVVKIIRPSE 194


>ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 208

 Score =  300 bits (768), Expect = 5e-79
 Identities = 145/196 (73%), Positives = 175/196 (89%), Gaps = 2/196 (1%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+TRLFRIRKT+ QML DRGY V D+EI++T+ QF  KYGEN+K+ED+ +NK++
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 193 RNDSSDQIYV-FFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSG 369
           RNDSSDQ+Y+ FFPEE KVG+K +KTYT RMKS+NVFR +LVVQQ+LTPFA+ C++E + 
Sbjct: 61  RNDSSDQVYICFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 120

Query: 370 R-FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARY 546
           + FHLEVFQEAELLVNIK+HVLVPEHQLL +EEKK+LL+RYTVKETQLPRIQ+ DPVARY
Sbjct: 121 KSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARY 180

Query: 547 YGLKRGHVVKIIRPSE 594
           YGLKRG VVKIIRPSE
Sbjct: 181 YGLKRGQVVKIIRPSE 196


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  300 bits (768), Expect = 5e-79
 Identities = 142/194 (73%), Positives = 175/194 (90%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+ RL+RIRKT+MQML DRG+LV D+EIN++K++F  KYGE++K+EDL +NK++
Sbjct: 1   MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           +++S DQIYVFFP+EPKVGVK +KTYT RM S+NV+R +LV Q +LTPFA+TCI+E+S +
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEH LVPEHQ+LTD EKK+LL+RYTVKETQLPRIQ+ DPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
           gi|482567281|gb|EOA31470.1| hypothetical protein
           CARUB_v10014656mg [Capsella rubella]
          Length = 205

 Score =  300 bits (767), Expect = 6e-79
 Identities = 141/193 (73%), Positives = 171/193 (88%)
 Frame = +1

Query: 16  LTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKARR 195
           + +EEE+ RL+RI KTLMQML DRGY + D EI +TK QFI KYG+N+K+EDL   KA+R
Sbjct: 1   MLTEEEIKRLYRIHKTLMQMLKDRGYFIADSEITITKQQFIRKYGDNMKREDLVTLKAKR 60

Query: 196 NDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGRF 375
           ND+SDQ+Y+FFP+E KVGVK +K YT RMKS+NV+R +LVVQQ+LTPFA+TCI+E+S +F
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKF 120

Query: 376 HLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYGL 555
           HLEVFQEAE+LVNIKEHVLVPEHQ+LT EEKK+LL+RYTVKETQLPRIQ+ DP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 556 KRGHVVKIIRPSE 594
           KRG VVKIIRPSE
Sbjct: 181 KRGQVVKIIRPSE 193


>ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  299 bits (765), Expect = 1e-78
 Identities = 143/194 (73%), Positives = 172/194 (88%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+  EEE+TRL+RIRKT+M ML DR YLV D+E+N++K++F +KYGEN+K+EDL +NK +
Sbjct: 1   MVFPEEEITRLYRIRKTVMVMLRDRNYLVGDFEVNMSKHEFKEKYGENMKREDLVINKTK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           ++  SDQIYVFFPEE KVGVK +KTYT RM S+NV+R +LV Q SLTPFA+TCIAE+S +
Sbjct: 61  KDKPSDQIYVFFPEEVKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFARTCIAEVSSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEHVLVPEHQ+LT+ EKK+LL+RYTVKETQLPRIQ+ DPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTETEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
           gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score =  298 bits (764), Expect = 1e-78
 Identities = 141/194 (72%), Positives = 174/194 (89%)
 Frame = +1

Query: 13  MLTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKAR 192
           M+ SEEE+ RL+RIRKT+MQML DR +LV D+EIN++K++F  KYGE++K+EDL +NK++
Sbjct: 1   MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 193 RNDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGR 372
           +++S DQIYVFFP+EPKVGVK +KTYT RM S+NV+R +LV Q +LTPFA+TCI+E+S +
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 373 FHLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYG 552
           FHLEVFQEAELLVNIKEH LVPEHQ+LTD EKK+LL+RYTVKETQLPRIQ+ DPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 553 LKRGHVVKIIRPSE 594
           LKRG VVKIIRPSE
Sbjct: 181 LKRGQVVKIIRPSE 194


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score =  297 bits (761), Expect = 3e-78
 Identities = 140/193 (72%), Positives = 172/193 (89%)
 Frame = +1

Query: 16  LTSEEEVTRLFRIRKTLMQMLNDRGYLVTDYEINLTKNQFIDKYGENIKKEDLTVNKARR 195
           + +EEE+ RL+RI+KTLMQML DRGY + D E+ +TK QFI K+G+N+K+EDL   KA+R
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 196 NDSSDQIYVFFPEEPKVGVKQIKTYTERMKSDNVFRGVLVVQQSLTPFAKTCIAEMSGRF 375
           ND+SDQ+Y+FFP+E KVGVK +K YT RMKS+NVFR +LVVQQ+LTPFA+TCI+E+S +F
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 376 HLEVFQEAELLVNIKEHVLVPEHQLLTDEEKKSLLQRYTVKETQLPRIQLNDPVARYYGL 555
           HLEVFQEAE+LVNIKEHVLVPEHQ+LT EEKK+LL+RYTVKETQLPRIQ+ DP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 556 KRGHVVKIIRPSE 594
           KRG VVKIIRPSE
Sbjct: 181 KRGQVVKIIRPSE 193