BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00005639
         (3195 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...  1344   0.0  
ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [F...  1309   0.0  
gb|EOX92637.1| Topoisomerase 3alpha isoform 1 [Theobroma cacao]      1306   0.0  
ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...  1306   0.0  
ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1298   0.0  
ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Popu...  1290   0.0  
ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...  1288   0.0  
ref|XP_006465105.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1283   0.0  
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...  1258   0.0  
gb|EOX92638.1| Topoisomerase 3alpha isoform 2, partial [Theobrom...  1255   0.0  
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform...  1226   0.0  
ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ric...  1224   0.0  
ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform...  1218   0.0  
ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana] gi|...  1216   0.0  
ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [A...  1215   0.0  
ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Caps...  1213   0.0  
ref|XP_006394227.1| hypothetical protein EUTSA_v10003618mg [Eutr...  1209   0.0  
ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [O...  1205   0.0  
ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...  1203   0.0  
ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group] g...  1200   0.0  

>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 637/915 (69%), Positives = 741/915 (80%), Gaps = 6/915 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            ++VLNVAEKPSVAK+V+ ILSRN   RVREGRS YNK+FEF Y+I GQ C+M+ TSV GH
Sbjct: 1    MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFNYSIRGQHCQMVVTSVIGH 60

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EF+DR++KW+SCDP  LY AP+RK+VPEDK DIKRTLEEEAR+CQWL+LWLDCDRE
Sbjct: 61   LMELEFEDRFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCDRE 120

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EV+ VC   N  +++WRARFSALIDR+IHE+VQNL RPN   +DAVDVRQEIDL
Sbjct: 121  GENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEIDL 180

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQTMLL+DAF  D A DDRNLV+SYGPCQFPTLGFVVERYWE  SHE EEFW
Sbjct: 181  RIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLS 1134
            TI CSH SDE  + F+W+R  +FDYTCA I+YEMCI+EPTATVTKV Q++K KYPP+PL+
Sbjct: 241  TINCSHKSDEGTSTFNWMRAHLFDYTCAVIIYEMCIQEPTATVTKVRQQEKLKYPPHPLN 300

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+F MS+  TMK AEDLYQTGFISYPRTETD FSERT+L GIV+EQ  HP+
Sbjct: 301  TIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSERTDLHGIVQEQLGHPI 360

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WGSYA+RLLDPGA LWR+P NGGHDDKAHPPIHPTKFS+GES W++  + +YELVVRHFL
Sbjct: 361  WGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESGWSQDHQRLYELVVRHFL 420

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA+GAET V+IDIAGE FS+SGRVII++NYLDVYRF+SWGGS+IPTY  GQQF P
Sbjct: 421  ACVSQPAVGAETIVEIDIAGESFSSSGRVIIAKNYLDVYRFESWGGSMIPTYVFGQQFIP 480

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            TTL LDSGVT              MDKAGIGTDATMH+HIKKLLDRFYA KD    F+PT
Sbjct: 481  TTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPT 540

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKPYLRS ME DM+AVS+GTKR+ E L  CL+QMKACFLDARL
Sbjct: 541  NLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARL 600

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
            NK KL+E+M +FFERS+RS+ D+QH VG+VVR+C LCQ+ DMVL+ +P+GNFMVGCLGYP
Sbjct: 601  NKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYP 660

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRNVVWLPGS+SEA +TT  CN CTPGPVY IQFKFRR+EIPPNYN DHLGC+ GCD I
Sbjct: 661  QCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEI 720

Query: 2395 LKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSGR 2571
            L+QL EICGTGSRI AR R              RQ AC+HC QTGH+S++CPS V RS  
Sbjct: 721  LRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSRVPRSRN 780

Query: 2572 ARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENGA 2751
            ++S R +  +GE+++ C+ C +PCI+RTANTENNRGR+FY CQSQ CNFFVWED++ + +
Sbjct: 781  SQSHRTNMPSGESSIPCNVCGTPCILRTANTENNRGRKFYSCQSQECNFFVWEDSLNSSS 840

Query: 2752 GGFN----TRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFR 2919
            GG +    T  SS+S+P+                          FVS TGDPVSGR CF 
Sbjct: 841  GGRSAQPATARSSASNPS--RRGGRGRGDRGRGRQSGARTSDTTFVSATGDPVSGRRCFV 898

Query: 2920 CGDPAHFANACPNRG 2964
            CGDP+HFAN CPNRG
Sbjct: 899  CGDPSHFANVCPNRG 913


>ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [Fragaria vesca subsp.
            vesca]
          Length = 908

 Score = 1309 bits (3387), Expect = 0.0
 Identities = 622/913 (68%), Positives = 716/913 (78%), Gaps = 3/913 (0%)
 Frame = +1

Query: 235  VIRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTG 411
            ++RVLNVAEKPSVAKSV+ ILSR    R+REGRS YNKI+EF Y+I+G  C+MLFTSVTG
Sbjct: 1    MVRVLNVAEKPSVAKSVANILSRGQGLRMREGRSRYNKIYEFNYSINGCHCQMLFTSVTG 60

Query: 412  HLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDR 591
            HLME EF+DR++KW+SCDP  L++AP+RK+VPEDK DIKRTLEEEAR CQWL+LWLDCDR
Sbjct: 61   HLMELEFEDRFRKWHSCDPALLFQAPVRKFVPEDKLDIKRTLEEEARNCQWLVLWLDCDR 120

Query: 592  EGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEID 771
            EGENI++EV++VC + N  L I RARFSALIDRDIH AVQNLD  N + +DAVD RQEID
Sbjct: 121  EGENIAFEVIDVCTSVNRHLTIKRARFSALIDRDIHHAVQNLDNANKYFADAVDARQEID 180

Query: 772  LRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEF 951
            LRIGASFTRFQTMLL+DAF  D ATDDRNLV+SYGPCQFPTLGF+VERYWE  SHE EEF
Sbjct: 181  LRIGASFTRFQTMLLRDAFVIDSATDDRNLVLSYGPCQFPTLGFIVERYWEIQSHEPEEF 240

Query: 952  WTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPL 1131
            WTI CSH SDE  A F W+RG +FD+ CA I+YEMC+E+P ATVTKV Q++K KYPPYPL
Sbjct: 241  WTINCSHRSDEGTATFGWMRGHLFDHACAVIIYEMCVEDPIATVTKVRQQEKPKYPPYPL 300

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            +T+ELEKRASR+FRMS+  TMK AE+LYQ GFISYPRTETD FS RT+L  IV+EQ+ HP
Sbjct: 301  NTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDGFSPRTDLHAIVQEQQGHP 360

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
             WGSYA+RLLDP + LWR+P +GGHDDKAHPPIHPTKFS+GES W++    +YELVVRHF
Sbjct: 361  GWGSYAQRLLDPASGLWRNPSSGGHDDKAHPPIHPTKFSAGESNWSQDHNRLYELVVRHF 420

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LACVSQPA+GAET+V+IDIAGE FSASGRVI+++NYLDVYRF+SWGGSL+PTYA GQQF 
Sbjct: 421  LACVSQPAVGAETTVEIDIAGEMFSASGRVILAKNYLDVYRFESWGGSLLPTYAVGQQFM 480

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            PTTL LDSGVT              MDK GIGTDATMH+HIKKLLDRFYA KD    F+P
Sbjct: 481  PTTLTLDSGVTRPPPLLSEADLLGCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFSP 540

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYDDMGY+LWKPYLR+ ME DM+AVS G K K E LE CLQQMK CFLDAR
Sbjct: 541  TNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGNKSKAEVLETCLQQMKGCFLDAR 600

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
             NK KL E+M VFFERS+R   DDQH  GE +RRC LCQ+ DMVL+   +GNFMVGC+GY
Sbjct: 601  QNKVKLFEAMAVFFERSNRPGGDDQHTSGEFIRRCGLCQEADMVLRKNRDGNFMVGCMGY 660

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRN +WLPGSVSEAV TTNICNSCTPGPV++IQF FRR+EIPPNY+ +HLGCIGGCD 
Sbjct: 661  PQCRNAIWLPGSVSEAVATTNICNSCTPGPVHLIQFTFRRLEIPPNYSTNHLGCIGGCDE 720

Query: 2392 ILKQLIEICGTGSRIPARERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSGR 2571
            IL+QL EICGTGSR  AR R             RQ AC++C Q+GH+S +CPS  S    
Sbjct: 721  ILRQLTEICGTGSRSAARGRGPTTSSNVQQNNTRQGACIYCHQSGHSSGDCPSQSSGPRS 780

Query: 2572 ARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENGA 2751
             R R M+  +GE +V C++C +PC++RTANT  NRGR+FYKC SQ CNFFVWED V NG 
Sbjct: 781  VRPRTMNAQSGEISVSCTTCGAPCVLRTANTTQNRGRKFYKCPSQECNFFVWEDNVSNGN 840

Query: 2752 G--GFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCG 2925
            G  GF   N S+   A                          FVS TGDP SGR CF CG
Sbjct: 841  GGRGFQRANVSAGRGAG------GRGSGGRGAQGAGHATGGTFVSATGDPNSGRRCFVCG 894

Query: 2926 DPAHFANACPNRG 2964
            DP+HFAN CPNRG
Sbjct: 895  DPSHFANVCPNRG 907


>gb|EOX92637.1| Topoisomerase 3alpha isoform 1 [Theobroma cacao]
          Length = 914

 Score = 1306 bits (3381), Expect = 0.0
 Identities = 622/911 (68%), Positives = 722/911 (79%), Gaps = 2/911 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            I+VLNVAEKPSVAKSVSGILSRN   RVR+GRS +N+IFEF Y++ GQ C MLFTSVTGH
Sbjct: 5    IKVLNVAEKPSVAKSVSGILSRNQGLRVRDGRSRFNRIFEFNYSVRGQPCHMLFTSVTGH 64

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EF+DR++KW+SCDP  LY AP+RK+VPEDK DIKRTLEEEARRCQWL+LWLDCDRE
Sbjct: 65   LMELEFEDRFRKWHSCDPADLYHAPVRKHVPEDKMDIKRTLEEEARRCQWLVLWLDCDRE 124

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EV++VC   N  L I RARFSALI+R+IH A QNL  PNP+ SDAVD RQEIDL
Sbjct: 125  GENIAFEVIDVCRAVNCHLTIRRARFSALIEREIHHATQNLVDPNPWFSDAVDARQEIDL 184

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQTM+L+D F  D ATDDRNLV+SYGPCQFPTLGFVVERYWE  SHE EEFW
Sbjct: 185  RIGASFTRFQTMMLRDKFVIDSATDDRNLVLSYGPCQFPTLGFVVERYWEVQSHEPEEFW 244

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLS 1134
            TI CSH  DE +A F+W+RG +FD+TCA IVYEMC++EP ATVTKV  ++K KYPPYPLS
Sbjct: 245  TINCSHKLDEGVATFNWMRGHLFDHTCAVIVYEMCVQEPNATVTKVRHQEKLKYPPYPLS 304

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FRMS+  TMK AEDLYQ GFISYPRTETD FS RT+L  IV+EQ+ HP 
Sbjct: 305  TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSSRTDLHAIVQEQQDHPE 364

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WGSYA+RLLDPG  LWR+P +GGHDDKAHPPIHPTKFS+GE  W++  + +YELVVRHFL
Sbjct: 365  WGSYAQRLLDPGTSLWRNPSSGGHDDKAHPPIHPTKFSAGEHNWSQDHRKLYELVVRHFL 424

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA+GAET+V+IDIA EQFS SGRVI+ RNYLDVYR++SWGGS+IPTY  GQQF P
Sbjct: 425  ACVSQPAVGAETTVEIDIADEQFSTSGRVILERNYLDVYRYESWGGSMIPTYTLGQQFIP 484

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            T+L LD+GVT              MDKAGIGTDATMH+HIKKLLDRFYA KD    F+PT
Sbjct: 485  TSLTLDTGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPT 544

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKP LRS ME DM+ VS+G KRK+E L  CLQQMKACFLDARL
Sbjct: 545  KLGEALVMGYDDMGYELWKPNLRSMMEFDMKEVSVGNKRKDEVLATCLQQMKACFLDARL 604

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
            NK KL+E+M VFFERS++S  DD HV GEVVR+C LC++  MVLK   +GNFMVGCLG+P
Sbjct: 605  NKVKLLEAMAVFFERSNQSAGDDNHVAGEVVRQCGLCRESSMVLKKNRDGNFMVGCLGFP 664

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN +WLPGSV EA VT+NIC SC PGPVY+IQFKFR++EIPP +NA+HLGCIGGCD I
Sbjct: 665  QCRNAIWLPGSVLEAAVTSNICGSCNPGPVYLIQFKFRQLEIPPGFNANHLGCIGGCDDI 724

Query: 2395 LKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSGR 2571
            L+QLIEICGTGSR+ AR R             +RQ AC++C+QTGH+S++CPS  S S  
Sbjct: 725  LRQLIEICGTGSRMSARGRGPTTTSSNVQRNSSRQGACLYCQQTGHSSNDCPSQFSGSRN 784

Query: 2572 ARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENGA 2751
            +RS R  + NGE +V CS+C +PC++RTANT NNRGR+FY C SQ CNFF+WED   NG 
Sbjct: 785  SRS-RTSSQNGEPSVSCSTCGTPCVLRTANTANNRGRKFYSCPSQECNFFIWEDEHNNGT 843

Query: 2752 GGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGDP 2931
            GG +   +  +  AS                         FVS TGDP+SGR C+ CGDP
Sbjct: 844  GGRSIPRAGINGSAS-NSSRGGGRGRGRFGQNGARAADVTFVSATGDPISGRRCYVCGDP 902

Query: 2932 AHFANACPNRG 2964
            +HFAN CPNRG
Sbjct: 903  SHFANVCPNRG 913


>ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum tuberosum]
          Length = 915

 Score = 1306 bits (3379), Expect = 0.0
 Identities = 627/920 (68%), Positives = 730/920 (79%), Gaps = 10/920 (1%)
 Frame = +1

Query: 235  VIRVLNVAEKPSVAKSVSGILSRNH---FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSV 405
            VIRVLNVAEKPSVAK+VSGILS+N     RVR+GRS YNKIFEF YTI  Q C+MLFTSV
Sbjct: 8    VIRVLNVAEKPSVAKAVSGILSKNQPGGMRVRDGRSRYNKIFEFNYTIRNQPCQMLFTSV 67

Query: 406  TGHLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDC 585
            TGHLME EFD+RY+KW+SCDP+ LY AP+RK+VPEDK DIKRTLE EAR CQW++LWLDC
Sbjct: 68   TGHLMELEFDERYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQWIVLWLDC 127

Query: 586  DREGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQE 765
            DREGENI++EV++VC   N  LN+WRARFSALIDR+IH++VQ L +PN   SDAVDVRQE
Sbjct: 128  DREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQE 187

Query: 766  IDLRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQE 945
            IDLRIGASFTRFQTMLL+ AF  D ATDDRN+V+SYGPCQFPTLGFVVERYWE  +HE E
Sbjct: 188  IDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWEIQAHEPE 247

Query: 946  EFWTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPY 1125
            EFWTI C+HNSDE  A F+W+RG +FDYTC   +YEMCI+EP ATVTKV Q++K KYPP+
Sbjct: 248  EFWTINCTHNSDEGTATFNWMRGHLFDYTCGVTIYEMCIQEPIATVTKVKQQEKLKYPPH 307

Query: 1126 PLSTLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKA 1305
            PLST+ELEKRASR+FRMS+ +TMK AEDLYQ GFISYPRTETDSFSE+T+L  +V+EQ+ 
Sbjct: 308  PLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDSFSEKTDLRTMVQEQEG 367

Query: 1306 HPVWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVR 1485
            HPVWG YA+RLLDP + LWR+P  GGHDDKAHPPIHPTKFS+GE+RW++    VYELVVR
Sbjct: 368  HPVWGIYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHRVYELVVR 427

Query: 1486 HFLACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQ 1665
            HFLACVSQPA+GAET V+IDIAGE FSA GRVI+++NYLDVYRF+SWGGS+IPTY+ GQQ
Sbjct: 428  HFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIPTYSFGQQ 487

Query: 1666 FTPTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHF 1845
            FTPTTL LDSGVT              MDKAGIGTDATMH+HIKKLLDRFYAIKD    F
Sbjct: 488  FTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAIKDSNTRF 547

Query: 1846 APTTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLD 2025
            +PT LGEALVMGYDDMGYELWKPYLR+ ME DM+AVS+GTKRK E LE CLQQMKACF D
Sbjct: 548  SPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSIGTKRKAEVLETCLQQMKACFSD 607

Query: 2026 ARLNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCL 2205
            AR NK KL+E+M +FFERS+RS+  +Q  VG+VVRRC LC + DMVL+ +P+GNFMVGCL
Sbjct: 608  ARTNKGKLLEAMAIFFERSNRSSGGEQQAVGDVVRRCGLCLESDMVLRQKPDGNFMVGCL 667

Query: 2206 GYPQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGC 2385
            GYPQCRNVVWLPGSVSEA VT N C SC+PGPV+ IQFKFRR+EIPPNY+  HLGCIGGC
Sbjct: 668  GYPQCRNVVWLPGSVSEASVTENTCTSCSPGPVFKIQFKFRRLEIPPNYSVQHLGCIGGC 727

Query: 2386 DSILKQLIEICGTGSRIPARERXXXXXXXXXXXYAR------QNACVHCRQTGHASDNCP 2547
            D IL+QL+EICGTGSR  +               A+      Q++C +CRQTGH S++CP
Sbjct: 728  DDILRQLVEICGTGSRNNSNTSGRGRGNPTASSSAQRGNSRAQSSCAYCRQTGHLSNDCP 787

Query: 2548 SLVSRSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVW 2727
            S  SR   AR++ +D  NGE+++ C+SC +PCI+RTANT NNRGR+F+ CQSQ CNFFVW
Sbjct: 788  SQASRGRTARAQEVD--NGESSIPCNSCGAPCILRTANTANNRGRKFFSCQSQECNFFVW 845

Query: 2728 EDAVENG-AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSG 2904
            ED +  G A   NT  S+SS                             FVS TG+P++G
Sbjct: 846  EDNLNGGRAERANTSASTSSGRGGRGRGRGQSGAHSSNVS---------FVSATGEPITG 896

Query: 2905 RACFRCGDPAHFANACPNRG 2964
            R CF CGDP HFAN CP RG
Sbjct: 897  R-CFICGDPGHFANVCPRRG 915


>ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
          Length = 920

 Score = 1298 bits (3358), Expect = 0.0
 Identities = 620/915 (67%), Positives = 722/915 (78%), Gaps = 5/915 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            + VLNVAEKPSVAKSV+ ILSRN   RVR+GRS YN+IFEF YTI GQ C MLFTSV GH
Sbjct: 6    VTVLNVAEKPSVAKSVANILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCHMLFTSVIGH 65

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EF+DRY+KW+SCDP  LY AP+RK VPEDK DIKRTLEEEARRCQWL+LWLDCDRE
Sbjct: 66   LMELEFEDRYRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDRE 125

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EVV+VC   N  L I RARFSALIDR+IH+AVQNL  PN + +DAVD RQEIDL
Sbjct: 126  GENIAFEVVDVCTAANPHLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDL 185

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQTML+KDAF  D  TDDRN+++SYGPCQFPTLGFVVERYWE  +HE EEFW
Sbjct: 186  RIGASFTRFQTMLMKDAFIIDTITDDRNIILSYGPCQFPTLGFVVERYWEIQAHEPEEFW 245

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLS 1134
            +I CSH SDE +A FSW RG +FDYTCA I+YEMC EEPTATVT V Q++K KYPP+PLS
Sbjct: 246  SINCSHRSDEGVANFSWGRGHLFDYTCAVIIYEMCTEEPTATVTNVRQQEKLKYPPHPLS 305

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FRMS+  TMK AE+LYQ+GFISYPRTETD+FS RT+L  IV+EQ+ HP 
Sbjct: 306  TIELEKRASRYFRMSSEHTMKVAEELYQSGFISYPRTETDNFSSRTDLHAIVQEQQGHPQ 365

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WG YA+RLLDP A LWR+P  GGHDDKAHPPIHPTKFS+GES W++  + +YELVVRHFL
Sbjct: 366  WGVYAQRLLDPEAGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQDHRKLYELVVRHFL 425

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVS+PA+GAET+V+IDIAGE FSA GRVI+ +NYLDVY+++SWGGS+IPTY  GQQF P
Sbjct: 426  ACVSKPAVGAETTVEIDIAGELFSACGRVILEKNYLDVYQYESWGGSIIPTYTIGQQFIP 485

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            TTL LDSGVT              MDK GIGTDATMH+HIKKLLDRFYA KD    F PT
Sbjct: 486  TTLTLDSGVTRPPPPLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASMRFTPT 545

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGY+LWKPYLR+ ME DM++VS GTK K E L+  LQQMKACFLDARL
Sbjct: 546  NLGEALVMGYDDMGYKLWKPYLRAVMERDMKSVSEGTKSKTEVLDTSLQQMKACFLDARL 605

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
            NK KL+E+MG+FFERS+RS  ++Q+ +GEVVRRC LC++ DMVLK   +GNFMVGCLG+P
Sbjct: 606  NKVKLLEAMGIFFERSNRSGGEEQNAIGEVVRRCGLCRESDMVLKKSRDGNFMVGCLGFP 665

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN VWLPGSVSEAVVTTN C++CTPGPVY IQFKFR++EIPPNY+ +HLGCIGGCD I
Sbjct: 666  QCRNAVWLPGSVSEAVVTTNTCSNCTPGPVYRIQFKFRQLEIPPNYDVNHLGCIGGCDEI 725

Query: 2395 LKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPS--LVSRS 2565
            L QL EICGTG R+PAR R              RQ  C++C++TGH+S++CPS  L SR+
Sbjct: 726  LTQLTEICGTGPRMPARPRGPTTSTGNAHHTNPRQAVCMNCQETGHSSNDCPSQTLRSRN 785

Query: 2566 GRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVEN 2745
             R     M+  +GE +V C+SC +PC++RTANT NNRGR+FY C SQ CNFFVWED + +
Sbjct: 786  ARQHGNVMNQQSGEASVSCNSCGTPCVLRTANTANNRGRKFYSCPSQECNFFVWEDDLNS 845

Query: 2746 GAGGFN-TRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRC 2922
            G GG + TR++S                               FVS TGDP+SGR CF C
Sbjct: 846  GTGGGSFTRSNSIPTSNRGRNGRNGGRGARGRGRNASSSSNVTFVSATGDPISGRRCFVC 905

Query: 2923 GDPAHFANACPNRGG 2967
            GDP+HFAN CPNRGG
Sbjct: 906  GDPSHFANVCPNRGG 920


>ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Populus trichocarpa]
            gi|222856496|gb|EEE94043.1| hypothetical protein
            POPTR_0005s06810g [Populus trichocarpa]
          Length = 910

 Score = 1290 bits (3337), Expect = 0.0
 Identities = 615/912 (67%), Positives = 715/912 (78%), Gaps = 2/912 (0%)
 Frame = +1

Query: 235  VIRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            +I+VLNVAEKPSVAKSV+ ILSRN  RVR+GRS YNKIFEF Y+I+GQQC ML TSVTGH
Sbjct: 1    MIKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGH 60

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EF+DR++KW+SCDP  LY AP+RKYVPEDK DIKRTLEEEARRC WL+LWLDCDRE
Sbjct: 61   LMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDRE 120

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EV+ VC   N  L I RARFSALI+RDIHEA QNL  PN + SDAVD RQEIDL
Sbjct: 121  GENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDL 180

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQTMLL+D F  D A DDRNLV+SYGPCQFPTLGFVVERYWE  SHE EEFW
Sbjct: 181  RIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 240

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVT-KVIQEQKFKYPPYPL 1131
            TI C+H SDE LA F+W+RG +FDYT + I+YEMC+EEPTATV+ +  Q++K KYPPYPL
Sbjct: 241  TINCTHRSDEGLASFNWMRGHLFDYTSSVILYEMCVEEPTATVSNRNHQQEKLKYPPYPL 300

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            ST+ELEKRASR+FRMS+ +TMK AEDLYQ GFISYPRTETDSFS RT+L  IV+E + HP
Sbjct: 301  STIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHP 360

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
            VWGSYA+RLLDPGA LWR+P NGGHDDKAHPPIHPTKFS+GESRW++    +YELVVRHF
Sbjct: 361  VWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESRWSQDHHRLYELVVRHF 420

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LACVSQPA+GAET V+IDIAGE+FSASGRVI+++NYLDVYRF+SWG S+IPTY +GQQF 
Sbjct: 421  LACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTYLQGQQFI 480

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            P TL LDSGVT              MDKAGIGTDATMH+HIKKLLDRFY  KD    F+P
Sbjct: 481  PATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDANTRFSP 540

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYDDMGYELWKP LRS ME DM+ VS+G K K E L  CLQQMKACFLDA+
Sbjct: 541  TNLGEALVMGYDDMGYELWKPNLRSLMECDMKEVSVGNKSKAEVLATCLQQMKACFLDAK 600

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
            +NK KL+E+M +FF RS RSN DD   +GE VR C LCQ+ +MVLK   +GNFMVGC G+
Sbjct: 601  VNKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGF 660

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRN VWLPG V EA +T NICNSCTPGPVY+IQFKFR++EIPP +N +HLGCIGGCD 
Sbjct: 661  PQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDE 720

Query: 2392 ILKQLIEICGTGSRIP-ARERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSG 2568
             L+QLIEICGTGSR+                  +RQ  C++C QTGHAS +CPS +S + 
Sbjct: 721  TLRQLIEICGTGSRVQGGNGPPTTTPSNPQRSNSRQAPCIYCYQTGHASTDCPSRISATR 780

Query: 2569 RARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENG 2748
              +S  M+  NGE+++ CS+C +PC++RTANT NNRGR+FY C SQ+CNFFVWED + NG
Sbjct: 781  HVQSHGMNQQNGESSIPCSTCGTPCVLRTANTANNRGRKFYSCSSQACNFFVWEDNLNNG 840

Query: 2749 AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGD 2928
            +   +    + S+ AS                         FVS TG+P+SGR CF CGD
Sbjct: 841  SAPRSAPRPNMSNSAS---NPSRRGGRGRGVQNAGRAADVTFVSATGEPISGRRCFVCGD 897

Query: 2929 PAHFANACPNRG 2964
            P+HFANACP+RG
Sbjct: 898  PSHFANACPSRG 909


>ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum lycopersicum]
          Length = 910

 Score = 1288 bits (3334), Expect = 0.0
 Identities = 621/915 (67%), Positives = 723/915 (79%), Gaps = 5/915 (0%)
 Frame = +1

Query: 235  VIRVLNVAEKPSVAKSVSGILSRNH---FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSV 405
            VIRVLNVAEKPSVAK+VSGILS+N     RVR+GRS YNKIFEF YTI  Q C+MLFTSV
Sbjct: 8    VIRVLNVAEKPSVAKAVSGILSKNQPGGIRVRDGRSRYNKIFEFNYTIRNQPCQMLFTSV 67

Query: 406  TGHLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDC 585
            TGHLME EF +RY+KW+SCDP+ LY APIRK+VPEDK DIKRTLE EAR CQW+ILWLDC
Sbjct: 68   TGHLMEIEFHERYRKWHSCDPLDLYNAPIRKFVPEDKLDIKRTLEAEARSCQWIILWLDC 127

Query: 586  DREGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQE 765
            DREGENI++EV++VC   N  L +WRARFSALIDR+IH++VQ L +PN   SDAVDVRQE
Sbjct: 128  DREGENIAFEVLDVCRQANHNLTVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQE 187

Query: 766  IDLRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQE 945
            IDLRIGASFTRFQTMLL+ AF  D ATDDRNLV+SYGPCQFPTLGFVVERYWE  +HE E
Sbjct: 188  IDLRIGASFTRFQTMLLRGAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPE 247

Query: 946  EFWTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPY 1125
            EFWTI C+HNSDE  A F+W+RG +FDYTC  ++YEMCI+EP ATVTKV Q++K KYPP+
Sbjct: 248  EFWTINCTHNSDEGTATFNWMRGHLFDYTCGVMIYEMCIQEPIATVTKVKQQEKLKYPPH 307

Query: 1126 PLSTLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKA 1305
            PLST+ELEKRASR+FRMS+ +TMK AEDLYQ GFISYPRTETD FS++T+L  +V+EQ+ 
Sbjct: 308  PLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSDKTDLRTMVQEQEG 367

Query: 1306 HPVWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVR 1485
            HPVWG+YA+RLLDP + LWR+P  GGHDDKAHPPIHPTKFS+GE+RW++    VYELVVR
Sbjct: 368  HPVWGTYAQRLLDPQSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRWSQDHHRVYELVVR 427

Query: 1486 HFLACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQ 1665
            HFLACVSQPA+GAET V+IDIAGE FSA GRVI+++NYLDVYRF+SWGGS+IPTY+ GQQ
Sbjct: 428  HFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIPTYSFGQQ 487

Query: 1666 FTPTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHF 1845
            FTPTTL LDSGV               MDKAGIGTDATMH+HIKKLLDRFYAIKD    F
Sbjct: 488  FTPTTLTLDSGVIRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAIKDSNTRF 547

Query: 1846 APTTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLD 2025
            +PT LGEALVMGYDDMGYELWKPYLR+ ME DM+AVS GTKRK E LE CLQQMKACF D
Sbjct: 548  SPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSTGTKRKAEVLETCLQQMKACFSD 607

Query: 2026 ARLNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCL 2205
            AR NKEKL+E+M +FFERS+RS+  +Q  VG VVRRC LC + DMVL+ +P+GNFMVGCL
Sbjct: 608  ARTNKEKLLEAMAIFFERSNRSSSGEQQAVGAVVRRCGLCLESDMVLRQKPDGNFMVGCL 667

Query: 2206 GYPQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGC 2385
            GYPQCRNVVWLPGSVSEA VT N C +C+PGPV+ IQFKFR+ EIPP+Y+  HLGCIGGC
Sbjct: 668  GYPQCRNVVWLPGSVSEASVTENTCITCSPGPVFKIQFKFRQQEIPPDYSVQHLGCIGGC 727

Query: 2386 DSILKQLIEICGTGSRIPARERXXXXXXXXXXXYAR-QNACVHCRQTGHASDNCPSLVSR 2562
            D IL+QL+EICGTGSR                  +R Q++C +CRQTGH S++CPS  SR
Sbjct: 728  DDILRQLVEICGTGSRNSRGRGNPTAFSSAQRDNSRAQSSCAYCRQTGHLSNDCPSQASR 787

Query: 2563 SGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVE 2742
               AR++ +D  NGE+++ C+SC +PCI+RTANT NNRGR+F+ CQS  CNFFVWED + 
Sbjct: 788  DRTARAQEVD--NGESSMPCNSCGAPCILRTANTANNRGRKFFSCQSSECNFFVWEDNLS 845

Query: 2743 NG-AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFR 2919
             G A   NT  S+SS                             FVS TG+P++ R CF 
Sbjct: 846  GGRAERANTSASTSSGRGGRGRGRGQSGAHSSNVS---------FVSATGEPITVR-CFI 895

Query: 2920 CGDPAHFANACPNRG 2964
            CGDP HFAN CP RG
Sbjct: 896  CGDPGHFANVCPRRG 910


>ref|XP_006465105.1| PREDICTED: DNA topoisomerase 3-alpha-like [Citrus sinensis]
          Length = 940

 Score = 1283 bits (3319), Expect = 0.0
 Identities = 625/946 (66%), Positives = 726/946 (76%), Gaps = 6/946 (0%)
 Frame = +1

Query: 145  PNPRLLTSLLS-LPEAVFHRRP---SGFFSGRIMVIRVLNVAEKPSVAKSVSGILSRNH- 309
            P+P +LT   S   E    ++P   S   +G    I VLNVAEKPSVAKSV+GILS+N  
Sbjct: 3    PSPLILTFFKSHTKEKPNKQKPFTSSTQMAGGGRPINVLNVAEKPSVAKSVAGILSKNQG 62

Query: 310  FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHLMETEFDDRYKKWNSCDPVQLYEAP 489
             R+REGRS YNKI+EF Y+I GQ C ML TSVTGHLME +FD+RY+KW+SCDP  LY AP
Sbjct: 63   LRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYHAP 122

Query: 490  IRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREGENISYEVVNVCNTTNSRLNIWRAR 669
            +RK+VPEDK DIK+TLEEEARRCQWL+LWLDCDREGENI++EV+ VC   N  L + RAR
Sbjct: 123  VRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRRAR 182

Query: 670  FSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLRIGASFTRFQTMLLKDAFNFDCATD 849
            FSALIDR+IH+AVQNL  PN + +DAVD RQEIDLRIGASFTRFQTMLLK+ F+ D  TD
Sbjct: 183  FSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKN-FHIDSVTD 241

Query: 850  DRNLVISYGPCQFPTLGFVVERYWERASHEQEEFWTIKCSHNSDERLAEFSWIRGRIFDY 1029
            DRNLV+SYGPCQFPTLGFVVERYWE  +HE EEFWTI CSH S+E  A FSW+RG +FDY
Sbjct: 242  DRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFDY 301

Query: 1030 TCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLSTLELEKRASRHFRMSATETMKAAED 1209
            T A I+YEMC++EPTATVTKV Q++K KYPPYPLST+ELEKRASR+FRMS+  TMK AED
Sbjct: 302  TSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAED 361

Query: 1210 LYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPVWGSYAERLLDPGARLWRHPGNGGHD 1389
            LYQ GFISYPRTETDSFS  TNL GIV+EQ  HP WG YA+RLLD  A LWR+PG+GGHD
Sbjct: 362  LYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGHD 421

Query: 1390 DKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFLACVSQPAIGAETSVKIDIAGEQFSA 1569
            DKAHPPIHPTKFSSGESRW++    +YELVVRHFLACVSQPA+GAET V+I+IAGE FS 
Sbjct: 422  DKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFST 481

Query: 1570 SGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTPTTLNLDSGVTNXXXXXXXXXXXXAM 1749
            SGRVI+++NYLDVYRF+SWGG +IPTY  GQQF PTTL LDSGVT              M
Sbjct: 482  SGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSCM 541

Query: 1750 DKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPTTLGEALVMGYDDMGYELWKPYLRSA 1929
            DKAGIGTDATMH+HIKKLLDRFYAIKD    FAPT +GEALVMGYDDMGYELWKP LRS 
Sbjct: 542  DKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRSM 601

Query: 1930 MEADMRAVSMGTKRKEEALEACLQQMKACFLDARLNKEKLIESMGVFFERSSRSNVDDQH 2109
            ME+DM+ VS+G K K + L  CLQQMKACFLDARL K KL+E+MG+FFERS     +DQ 
Sbjct: 602  MESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERSGG---EDQQ 658

Query: 2110 VVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYPQCRNVVWLPGSVSEAVVTTNICNSC 2289
              GEVVR+C +CQ+ +MVLK   +GN MVGCL +PQCRN VWLPGSVSEA VTTN CNSC
Sbjct: 659  AAGEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSC 718

Query: 2290 TPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSILKQLIEICGTGSRIPARER-XXXXX 2466
            TPGPVY+IQFKFR+ EIPP +N +HLGCIGGCD  L+QLIEICGTGSRIPAR R      
Sbjct: 719  TPGPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASS 778

Query: 2467 XXXXXXYARQNACVHCRQTGHASDNCPSLVSRSGRARSRRMDTSNGETTVFCSSCESPCI 2646
                    RQ AC++C+Q GH+S +CPS  S S  AR+  M+  +GE+++ C++C +PC+
Sbjct: 779  NNGQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQSGESSIQCTTCGTPCV 838

Query: 2647 VRTANTENNRGRRFYKCQSQSCNFFVWEDAVENGAGGFNTRNSSSSHPASXXXXXXXXXX 2826
            +RTANT NNRGR+FY C SQ CNFFVWED  +NG     TR    +  +           
Sbjct: 839  LRTANTANNRGRKFYSCSSQECNFFVWEDDAKNG-----TRRMPQAGVSGSASNPSQRGG 893

Query: 2827 XXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGDPAHFANACPNRG 2964
                           FVS TGDP+SGR C+ CG+P+HFANACPNRG
Sbjct: 894  RGRGGQSRGHNTGMTFVSATGDPISGRRCYVCGEPSHFANACPNRG 939


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score = 1258 bits (3255), Expect = 0.0
 Identities = 608/923 (65%), Positives = 710/923 (76%), Gaps = 14/923 (1%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            I VLNVAEKPSVAKSV+ ILSRN   RVR+GRS YNKIFEF Y I GQ C M+ TSVTGH
Sbjct: 7    ITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFNYAIRGQSCNMIVTSVTGH 66

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME  F++RY+KW+SCDPVQL+ AP+ K+VPEDK DIKRTLE+E+RR QWL+LWLDCDRE
Sbjct: 67   LMELAFEERYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWLDCDRE 126

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EVV VC   N  LNI RA FSALI+RDIH+AVQNL +PN + +DAVD RQEIDL
Sbjct: 127  GENIAFEVVEVCTAVNHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDARQEIDL 186

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQT+LLKDAFN D  TDDRN+V+SYGPCQFPTLGFVVERYWE  SHE EEFW
Sbjct: 187  RIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW 246

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLS 1134
            TI CSHNSD+ ++ FSW RG +FDYTCA + YEMC++E TATV  V +++  KYPP+PL+
Sbjct: 247  TINCSHNSDDGISTFSWTRGNLFDYTCAVVFYEMCVQESTATVVNVRRQETLKYPPHPLN 306

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FRMS+  TMK AEDLYQ GFISYPRTETD FS+RT+L GIV EQ+ H +
Sbjct: 307  TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQRTDLHGIVREQQEHQI 366

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WG+YA+RLLDP +RLWR+P  GGHDDKAHPPIHPTKFS+GE  W++    +YELVVRHFL
Sbjct: 367  WGAYAQRLLDPESRLWRNPSGGGHDDKAHPPIHPTKFSAGERGWSQDHHRLYELVVRHFL 426

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRV-IISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            ACVSQPA+GA T+V+IDIAGE FS S R   I RNYLDVYRF+SWGGS IPTY  GQQF 
Sbjct: 427  ACVSQPAVGAVTTVEIDIAGELFSTSKRANSILRNYLDVYRFESWGGSTIPTYVSGQQFV 486

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            PTTL LDSGVT              MDK GIGTDATMH+HIKKLLDRFYA KD    F P
Sbjct: 487  PTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTP 546

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYDDMGY LWKP LR+ ME +M+AVS GTKRK+E L +CLQQMK CFLDAR
Sbjct: 547  TNLGEALVMGYDDMGYNLWKPNLRAIMEHEMKAVSEGTKRKDEVLASCLQQMKTCFLDAR 606

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
            +NK+KL+E+M VFFERS+ S  D+   VGEVV+ C LCQ  DMVLK   +GN+MVGCLG+
Sbjct: 607  VNKQKLLEAMEVFFERSNGSGGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYMVGCLGF 666

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRNVVWLPGS++EA VT++ C  CTPGPVY+IQFKFR++EIPPNYNA+HLGC+GGCD 
Sbjct: 667  PQCRNVVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDD 726

Query: 2392 ILKQLIEICGTGSRIPARERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSGR 2571
            IL+QL EICGTGSR+ AR R              Q+ C+ C+Q GH+S++CPS  S   R
Sbjct: 727  ILRQLTEICGTGSRVSARGRGTSSSNVQRDN-PGQSVCIFCQQVGHSSNDCPS-QSVGSR 784

Query: 2572 ARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENGA 2751
            +  RR    +GE++V CSSC SPC++RTANT NNRGR+FYKCQSQ CNFFVWED V+NG 
Sbjct: 785  SAQRR---QSGESSVSCSSCGSPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGN 841

Query: 2752 GGFNTR----NSSSSHPAS--------XXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDP 2895
            GG + +     SS S P++                                 FVS TG+P
Sbjct: 842  GGNSVQRSNVRSSGSAPSNLNPGQNTGRGRGRGRGRGRDRDRDRGQGQIAATFVSATGEP 901

Query: 2896 VSGRACFRCGDPAHFANACPNRG 2964
            +S R CF CGDP+HFAN CPNRG
Sbjct: 902  ISDRRCFVCGDPSHFANVCPNRG 924


>gb|EOX92638.1| Topoisomerase 3alpha isoform 2, partial [Theobroma cacao]
          Length = 845

 Score = 1255 bits (3248), Expect = 0.0
 Identities = 592/841 (70%), Positives = 688/841 (81%), Gaps = 4/841 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNH-FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            I+VLNVAEKPSVAKSVSGILSRN   RVR+GRS +N+IFEF Y++ GQ C MLFTSVTGH
Sbjct: 5    IKVLNVAEKPSVAKSVSGILSRNQGLRVRDGRSRFNRIFEFNYSVRGQPCHMLFTSVTGH 64

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EF+DR++KW+SCDP  LY AP+RK+VPEDK DIKRTLEEEARRCQWL+LWLDCDRE
Sbjct: 65   LMELEFEDRFRKWHSCDPADLYHAPVRKHVPEDKMDIKRTLEEEARRCQWLVLWLDCDRE 124

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDL 774
            GENI++EV++VC   N  L I RARFSALI+R+IH A QNL  PNP+ SDAVD RQEIDL
Sbjct: 125  GENIAFEVIDVCRAVNCHLTIRRARFSALIEREIHHATQNLVDPNPWFSDAVDARQEIDL 184

Query: 775  RIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            RIGASFTRFQTM+L+D F  D ATDDRNLV+SYGPCQFPTLGFVVERYWE  SHE EEFW
Sbjct: 185  RIGASFTRFQTMMLRDKFVIDSATDDRNLVLSYGPCQFPTLGFVVERYWEVQSHEPEEFW 244

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLS 1134
            TI CSH  DE +A F+W+RG +FD+TCA IVYEMC++EP ATVTKV  ++K KYPPYPLS
Sbjct: 245  TINCSHKLDEGVATFNWMRGHLFDHTCAVIVYEMCVQEPNATVTKVRHQEKLKYPPYPLS 304

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FRMS+  TMK AEDLYQ GFISYPRTETD FS RT+L  IV+EQ+ HP 
Sbjct: 305  TIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSSRTDLHAIVQEQQDHPE 364

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WGSYA+RLLDPG  LWR+P +GGHDDKAHPPIHPTKFS+GE  W++  + +YELVVRHFL
Sbjct: 365  WGSYAQRLLDPGTSLWRNPSSGGHDDKAHPPIHPTKFSAGEHNWSQDHRKLYELVVRHFL 424

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA+GAET+V+IDIA EQFS SGRVI+ RNYLDVYR++SWGGS+IPTY  GQQF P
Sbjct: 425  ACVSQPAVGAETTVEIDIADEQFSTSGRVILERNYLDVYRYESWGGSMIPTYTLGQQFIP 484

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            T+L LD+GVT              MDKAGIGTDATMH+HIKKLLDRFYA KD    F+PT
Sbjct: 485  TSLTLDTGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDSNTRFSPT 544

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKP LRS ME DM+ VS+G KRK+E L  CLQQMKACFLDARL
Sbjct: 545  KLGEALVMGYDDMGYELWKPNLRSMMEFDMKEVSVGNKRKDEVLATCLQQMKACFLDARL 604

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
            NK KL+E+M VFFERS++S  DD HV GEVVR+C LC++  MVLK   +GNFMVGCLG+P
Sbjct: 605  NKVKLLEAMAVFFERSNQSAGDDNHVAGEVVRQCGLCRESSMVLKKNRDGNFMVGCLGFP 664

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN +WLPGSV EA VT+NIC SC PGPVY+IQFKFR++EIPP +NA+HLGCIGGCD I
Sbjct: 665  QCRNAIWLPGSVLEAAVTSNICGSCNPGPVYLIQFKFRQLEIPPGFNANHLGCIGGCDDI 724

Query: 2395 LKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLV--SRS 2565
            L+QLIEICGTGSR+ AR R             +RQ AC++C+QTGH+S++CPS    SR+
Sbjct: 725  LRQLIEICGTGSRMSARGRGPTTTSSNVQRNSSRQGACLYCQQTGHSSNDCPSQFSGSRN 784

Query: 2566 GRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVEN 2745
             R+R+   +   GE +V CS+C +PC++RTANT NNRGR+FY C SQ CNFF+WED   N
Sbjct: 785  SRSRTSSQNGMQGEPSVSCSTCGTPCVLRTANTANNRGRKFYSCPSQECNFFIWEDEHNN 844

Query: 2746 G 2748
            G
Sbjct: 845  G 845


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Glycine max]
            gi|571460704|ref|XP_006581776.1| PREDICTED: DNA
            topoisomerase 3-alpha isoform X2 [Glycine max]
          Length = 913

 Score = 1226 bits (3171), Expect = 0.0
 Identities = 596/916 (65%), Positives = 700/916 (76%), Gaps = 7/916 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRN-HFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            + VLNVAEKP VA++V+ ILSRN + R+REGRS YNKIFEF YTI GQ C M+FTSVTGH
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EFDDRY+KW+SCDP  L+ AP+ K+VPEDK DIKRTLEEEARRCQWLILWLDCD E
Sbjct: 61   LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQN-LDRPNPFLSDAVDVRQEID 771
            GENI+YEV++VC   N  L I RA FS LIDRDIH A QN L  P+  ++DAVDVRQEID
Sbjct: 121  GENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQEID 180

Query: 772  LRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEF 951
            LRIGASFTRFQTML+KDAF  D ATDDRN V+SYGPCQFPTLGFVVER+WE  +HE EEF
Sbjct: 181  LRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPEEF 240

Query: 952  WTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPL 1131
            W+I CSH S E  AEFSW+RGR+FDYTCA I+YEMC+EEPTATVT + Q++K KYPP+PL
Sbjct: 241  WSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKPKYPPFPL 300

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            +T+EL+KRASR+FRMS+  TMK AE+LYQ GFISYPRTETDSFS  T+L  IV+EQ+ HP
Sbjct: 301  NTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLHTIVQEQQGHP 360

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
             WG YA+RL+DP A LWR+P  GGHDDKAHPPI+PTKFS+GES W++  + +YELVVRHF
Sbjct: 361  EWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHRKLYELVVRHF 420

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LACVS+PA+GAET+V+I+IAGE FSA GRVI+ +NYLDVYR++SWGGS+IPTY  GQQF 
Sbjct: 421  LACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMIPTYTNGQQFN 480

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDK--AGIGTDATMHEHIKKLLDRFYAIKDERFHF 1845
            PT L L+SGVT              MD+  A IGTDATM +HIKK+LDR YA KD    F
Sbjct: 481  PTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDSSTRF 540

Query: 1846 APTTLGEALVMGYD--DMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACF 2019
             PT LGEALV+GYD  DM Y+LWKP LRS ME  M  V  G K K E L   LQ+M+ACF
Sbjct: 541  TPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSKAEVLVTILQKMEACF 600

Query: 2020 LDARLNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVG 2199
            L+ARLNK KL+E+M +FFERS+RS+ D+ H  GEVVRRC LCQ+ DM+L+   +GNFMVG
Sbjct: 601  LEARLNKVKLLEAMAIFFERSTRSSSDELHATGEVVRRCGLCQESDMLLRKNRDGNFMVG 660

Query: 2200 CLGYPQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIG 2379
            C+GYPQCRN VWLPGSVSEAVVTTN CN CTPGPVY+IQFKFRR+EIPPNY+ +HLGCIG
Sbjct: 661  CMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIPPNYSPNHLGCIG 720

Query: 2380 GCDSILKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLV 2556
            GCD IL QL EICG G R+PAR R              RQ AC++CR+TGH+S +CP   
Sbjct: 721  GCDEILAQLTEICGRGPRMPARPRGPTAPTSNAHHTNPRQGACMNCRETGHSSTDCP--- 777

Query: 2557 SRSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDA 2736
             R G  +       NGE +V CSSC +PC++RTANT NNRGR+FY CQSQ CNFFVWED+
Sbjct: 778  LRYGNVQHHGTSEHNGEASVSCSSCGTPCVLRTANTVNNRGRKFYSCQSQECNFFVWEDS 837

Query: 2737 VENGAGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACF 2916
            +  G GG +   S+S  PA                          F+S TGDP+SGR C+
Sbjct: 838  LNAGTGGRSVTRSNSI-PALNPRQTGGRGSRGRGGQYGSRTANTTFMSATGDPISGRRCY 896

Query: 2917 RCGDPAHFANACPNRG 2964
             CGDP+HFAN CP+RG
Sbjct: 897  TCGDPSHFANVCPHRG 912


>ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223533243|gb|EEF34998.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 833

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 581/833 (69%), Positives = 672/833 (80%), Gaps = 4/833 (0%)
 Frame = +1

Query: 235  VIRVLNVAEKPSVAKSVSGILSRNH---FRVREGRSIYNKIFEFTYTIHGQQCEMLFTSV 405
            +I VLNVAEKPSVAKSV+ ILSRN     RVREG+S YNKIFEF Y I+GQ C ML TSV
Sbjct: 1    MINVLNVAEKPSVAKSVATILSRNQQHGLRVREGQSRYNKIFEFNYVINGQNCHMLVTSV 60

Query: 406  TGHLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDC 585
            TGHLME EFDDR++KW+SCDP  LY AP+RK+VPEDKT+IKRTLEEEARRCQWLILWLDC
Sbjct: 61   TGHLMELEFDDRFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLILWLDC 120

Query: 586  DREGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQE 765
            DREGENI++EVV+VC + N  L + RARFSALIDR+IHEA QNL  PN + SDAVD RQE
Sbjct: 121  DREGENIAFEVVDVCRSANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSDAVDARQE 180

Query: 766  IDLRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQE 945
            IDLRIGASFTRFQT+LL+D F  D A DDRNLV+SYGPCQFPTLGF+VERYWE  SHE E
Sbjct: 181  IDLRIGASFTRFQTLLLRDKFVIDSAQDDRNLVLSYGPCQFPTLGFIVERYWEIQSHESE 240

Query: 946  EFWTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPY 1125
            EFWTI CSH S E +A FSW+RG +FDYT A I+YE+C+ EPTATVTKV Q++K KYPPY
Sbjct: 241  EFWTINCSHTSVEGIANFSWMRGHLFDYTSAVILYELCVLEPTATVTKVQQKEKQKYPPY 300

Query: 1126 PLSTLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKA 1305
            PLST+ELEKRASR+F MS+ +TMK AEDLYQ+GFISYPRTETD FS RT+L  IV +Q+A
Sbjct: 301  PLSTIELEKRASRYFHMSSEQTMKVAEDLYQSGFISYPRTETDGFSSRTDLHTIVRDQQA 360

Query: 1306 HPVWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVR 1485
            HP+WGSYA+RLLDPG  LWR+P  GGHDDKAHPPIHPTKFS GE+ W++    VYELVVR
Sbjct: 361  HPIWGSYAQRLLDPGTGLWRNPSTGGHDDKAHPPIHPTKFSPGETGWSQDHHRVYELVVR 420

Query: 1486 HFLACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQ 1665
            HFLACVSQPA+GAET+V+IDIAGEQFSASGRVI+++NYLDVYRF+SWGGS+IPTY  GQQ
Sbjct: 421  HFLACVSQPAVGAETTVEIDIAGEQFSASGRVILAKNYLDVYRFESWGGSMIPTYVHGQQ 480

Query: 1666 FTPTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHF 1845
            F PTTL LDSGVT              MDKAGIGTDATMH+HIKKLLDRFYA KD    F
Sbjct: 481  FMPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRF 540

Query: 1846 APTTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLD 2025
            +PT LGEALVMGYDDMGYELWKP LRS ME DM+ VSMG K K E LE CLQQMK CFLD
Sbjct: 541  SPTNLGEALVMGYDDMGYELWKPNLRSMMEYDMKEVSMGHKSKAEVLETCLQQMKTCFLD 600

Query: 2026 ARLNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCL 2205
            AR+NK KL+E+M VFFERS RS+ +D H   ++VR+C LC++ +MVL+   +GNFMVGC+
Sbjct: 601  ARINKVKLLEAMAVFFERSDRSSGNDNHATVDIVRQCGLCRETNMVLRRNRDGNFMVGCM 660

Query: 2206 GYPQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGC 2385
            GYPQCRN +WLPG + EA VTT++CN CTPGPVY+IQFKFR++EIPP ++ +HLGCIGGC
Sbjct: 661  GYPQCRNAIWLPGPIIEATVTTSVCNYCTPGPVYLIQFKFRQLEIPPGFSVNHLGCIGGC 720

Query: 2386 DSILKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSR 2562
            D  L+QL +ICGTGSR+ AR R              R   CVHC QTGHAS +CP  +S 
Sbjct: 721  DDTLRQLTDICGTGSRVQARARAPNTTPSNSQQSNTRFATCVHCHQTGHASIDCPLQLSG 780

Query: 2563 SGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFF 2721
            S R +SR  +   GE++V C +C +PC +RTANT NNRGR+FY C SQSCNFF
Sbjct: 781  SRRVQSRGTNEQMGESSVTCGTCGTPCALRTANTANNRGRKFYSCPSQSCNFF 833


>ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform X3 [Glycine max]
          Length = 910

 Score = 1218 bits (3151), Expect = 0.0
 Identities = 595/916 (64%), Positives = 697/916 (76%), Gaps = 7/916 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRN-HFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGH 414
            + VLNVAEKP VA++V+ ILSRN + R+REGRS YNKIFEF YTI GQ C M+FTSVTGH
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFNYTIRGQPCHMIFTSVTGH 60

Query: 415  LMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDRE 594
            LME EFDDRY+KW+SCDP  L+ AP+ K+VPEDK DIKRTLEEEARRCQWLILWLDCD E
Sbjct: 61   LMELEFDDRYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDVE 120

Query: 595  GENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQN-LDRPNPFLSDAVDVRQEID 771
            GENI+YEV++VC   N  L I RA FS LIDRDIH A QN L  P+  ++DAVDVRQEID
Sbjct: 121  GENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQEID 180

Query: 772  LRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEF 951
            LRIGASFTRFQTML+KDAF  D ATDDRN V+SYGPCQFPTLGFVVER+WE  +HE EEF
Sbjct: 181  LRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPEEF 240

Query: 952  WTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPL 1131
            W+I CSH S E  AEFSW+RGR+FDYTCA I+YEMC+EEPTATVT + Q++K KYPP+PL
Sbjct: 241  WSIICSHESKEGTAEFSWMRGRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKPKYPPFPL 300

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            +T+EL+KRASR+FRMS+  TMK AE+LYQ GFISYPRTETDSFS  T+L  IV+EQ+ HP
Sbjct: 301  NTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSPGTDLHTIVQEQQGHP 360

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
             WG YA+RL+DP A LWR+P  GGHDDKAHPPI+PTKFS+GES W++  + +YELVVRHF
Sbjct: 361  EWGIYAQRLMDPEAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWSQDHRKLYELVVRHF 420

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LACVS+PA+GAET+V+I+IAGE FSA GRVI+ +NYLDVYR++SWGGS+IPTY  GQQF 
Sbjct: 421  LACVSKPALGAETTVEINIAGELFSACGRVILEKNYLDVYRYESWGGSMIPTYTNGQQFN 480

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDK--AGIGTDATMHEHIKKLLDRFYAIKDERFHF 1845
            PT L L+SGVT              MD+  A IGTDATM +HIKK+LDR YA KD    F
Sbjct: 481  PTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKKMLDRSYATKDSSTRF 540

Query: 1846 APTTLGEALVMGYD--DMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACF 2019
             PT LGEALV+GYD  DM Y+LWKP LRS ME  M  V  G K K E L   LQ+M+ACF
Sbjct: 541  TPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSKAEVLVTILQKMEACF 600

Query: 2020 LDARLNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVG 2199
            L+ARLNK KL+E+M +FFERSS    D+ H  GEVVRRC LCQ+ DM+L+   +GNFMVG
Sbjct: 601  LEARLNKVKLLEAMAIFFERSSS---DELHATGEVVRRCGLCQESDMLLRKNRDGNFMVG 657

Query: 2200 CLGYPQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIG 2379
            C+GYPQCRN VWLPGSVSEAVVTTN CN CTPGPVY+IQFKFRR+EIPPNY+ +HLGCIG
Sbjct: 658  CMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIPPNYSPNHLGCIG 717

Query: 2380 GCDSILKQLIEICGTGSRIPARER-XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLV 2556
            GCD IL QL EICG G R+PAR R              RQ AC++CR+TGH+S +CP   
Sbjct: 718  GCDEILAQLTEICGRGPRMPARPRGPTAPTSNAHHTNPRQGACMNCRETGHSSTDCP--- 774

Query: 2557 SRSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDA 2736
             R G  +       NGE +V CSSC +PC++RTANT NNRGR+FY CQSQ CNFFVWED+
Sbjct: 775  LRYGNVQHHGTSEHNGEASVSCSSCGTPCVLRTANTVNNRGRKFYSCQSQECNFFVWEDS 834

Query: 2737 VENGAGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACF 2916
            +  G GG +   S+S  PA                          F+S TGDP+SGR C+
Sbjct: 835  LNAGTGGRSVTRSNSI-PALNPRQTGGRGSRGRGGQYGSRTANTTFMSATGDPISGRRCY 893

Query: 2917 RCGDPAHFANACPNRG 2964
             CGDP+HFAN CP+RG
Sbjct: 894  TCGDPSHFANVCPHRG 909


>ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana]
            gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
            [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
            topoisomerase 3 alpha [Arabidopsis thaliana]
            gi|332010433|gb|AED97816.1| topoisomerase 3alpha
            [Arabidopsis thaliana]
          Length = 926

 Score = 1216 bits (3147), Expect = 0.0
 Identities = 582/911 (63%), Positives = 681/911 (74%), Gaps = 3/911 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHL 417
            + VLNVAEKPSVAKSV+GILSR  FR REGRS YNKIFEF Y I+GQ C ML TSV GHL
Sbjct: 9    VTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGHL 68

Query: 418  METEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREG 597
            ME EF DRY+KW+SCDP  LY+AP+ K+VPEDK DIK+TLEEEAR+  WL+LWLDCDREG
Sbjct: 69   MELEFADRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDREG 128

Query: 598  ENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLR 777
            ENI++EVV+VC      L I RA FSALIDRDIHEAVQNL  PN   ++AVD RQEIDLR
Sbjct: 129  ENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEIDLR 188

Query: 778  IGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFWT 957
            IGASFTRFQTMLL+D F  D   ++R+ VISYGPCQFPTLGF+VERYWE  +HE EEFWT
Sbjct: 189  IGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWT 248

Query: 958  IKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQ-EQKFKYPPYPLS 1134
            I CSH S+E LA F+W+RG +FDY  A I+YEMC+EEPTATV  V    ++FKYPPYPL+
Sbjct: 249  INCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYPPYPLN 308

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FR+S+  TMK AE+LYQ GFISYPRTETDSFS RT+L  +VEEQ  HP 
Sbjct: 309  TIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQTRHPA 368

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WGSYA+RLL+P   LWR+P NGGHDDKAHPPIHPTKFSSGES W+    NVYELVVRH+L
Sbjct: 369  WGSYAQRLLEPEGGLWRNPANGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELVVRHYL 428

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA+ AET+V+IDIAGE+FSASGR I+++NYL+VYRF+SWGGS+IP Y +GQQF P
Sbjct: 429  ACVSQPAVAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKGQQFIP 488

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            TTL LD+ VT              MDKAGIGTDATMH+HIKKLLDR YA KD    F+PT
Sbjct: 489  TTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSPT 548

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKP LR+ ME DM  VS+G K K E LE CLQQMKACFLDAR+
Sbjct: 549  NLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARV 608

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
             K KL+E+M +FFERS+ ++  +    GEVVRRC LC + DM L+   +GNFMVGC+ YP
Sbjct: 609  KKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMVGCMNYP 668

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN VWLPG   EA VTTN+C SC PGPVY I FKFR++ IPP ++ +HLGC+GGCD I
Sbjct: 669  QCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFDVNHLGCVGGCDDI 728

Query: 2395 LKQLIEICGTGSRIPARER--XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSG 2568
            LKQLI+ICGTGSR  AR                 + N C+HC+Q GHAS NCPS V  S 
Sbjct: 729  LKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCPSRVPASR 788

Query: 2569 RARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENG 2748
             +R    +  N E+TV C++C S C++RTANTE NRGR+F+ C +Q C+FF WED++ N 
Sbjct: 789  NSRPTATNPRNDESTVSCNTCGSQCVLRTANTEANRGRQFFSCPTQGCSFFAWEDSINNS 848

Query: 2749 AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGD 2928
            +G   T  S+S                              FVS TG+PVSG  CF CGD
Sbjct: 849  SGNATT-GSNSGGSGRRGSRGRGRGGRGGQSSGGRRGSGTSFVSATGEPVSGIRCFSCGD 907

Query: 2929 PAHFANACPNR 2961
            P+HFANACPNR
Sbjct: 908  PSHFANACPNR 918


>ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [Amborella trichopoda]
            gi|548834342|gb|ERM96738.1| hypothetical protein
            AMTR_s00202p00033660 [Amborella trichopoda]
          Length = 988

 Score = 1215 bits (3143), Expect = 0.0
 Identities = 580/915 (63%), Positives = 689/915 (75%), Gaps = 6/915 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHL 417
            IRVLNVAEKPSVAK+V+GILS+   RVREGRS YNK++EF + I GQ+C MLFTSVTGHL
Sbjct: 81   IRVLNVAEKPSVAKAVAGILSQGRLRVREGRSRYNKVYEFEHAIRGQRCHMLFTSVTGHL 140

Query: 418  METEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREG 597
            ME  F +RYKKW+SCDP  L+ API+K+VP+DK DIKRTLEEEAR CQWL+LWLDCDREG
Sbjct: 141  MEIVFHERYKKWHSCDPADLFSAPIQKHVPQDKLDIKRTLEEEARTCQWLVLWLDCDREG 200

Query: 598  ENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLR 777
            ENI++EVV VC T N  L+IWRA FSALIDR+I  AVQNL RPN   SDAVD RQEIDLR
Sbjct: 201  ENIAFEVVEVCTTANRNLDIWRAHFSALIDREIRHAVQNLGRPNQLFSDAVDARQEIDLR 260

Query: 778  IGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFWT 957
            IGASFTRFQTMLLK+AF  + + DD+N+++SYGPCQFPTLGFVVERYWE  +HE EEFWT
Sbjct: 261  IGASFTRFQTMLLKNAFVLNISDDDKNVIVSYGPCQFPTLGFVVERYWEIQAHEPEEFWT 320

Query: 958  IKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPLST 1137
            I CSH +DE +A F+W RG +FDY+CA I+YEMC+EEPTATV KV  +++ KYPP+PLST
Sbjct: 321  INCSHKTDEGIATFNWTRGHLFDYSCALIIYEMCVEEPTATVKKVSHQERRKYPPHPLST 380

Query: 1138 LELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPVW 1317
            LEL+KRAS++FRMS+  TMK AEDLYQ GFISYPRTETDSFS  T+L+ +V EQ+ HP W
Sbjct: 381  LELQKRASQYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSPNTDLQALVREQQGHPEW 440

Query: 1318 GSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFLA 1497
            GSYA+RLL P   LWR+P +GGHDDKAHPPIHPTKFS+GES W+     +YELVVRHFLA
Sbjct: 441  GSYAQRLLSPEG-LWRNPSSGGHDDKAHPPIHPTKFSAGESSWSPDHHRLYELVVRHFLA 499

Query: 1498 CVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTPT 1677
            CVSQPAIGA T+V+IDIAGE F ASG +II +NYL+VYRF+SWGGS IPTYA GQQF PT
Sbjct: 500  CVSQPAIGAGTTVEIDIAGEVFVASGLMIIEKNYLEVYRFESWGGSTIPTYAFGQQFIPT 559

Query: 1678 TLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPTT 1857
             L LDS VT              MDKAGIGTDATMH+HIKKLLDRFYAIKD    F+PTT
Sbjct: 560  RLTLDSSVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYAIKDSNTRFSPTT 619

Query: 1858 LGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARLN 2037
            LGEALVMGYD MG++LWKP LRSAME+DM+AVS G K K E L +CLQQMK CFLD + +
Sbjct: 620  LGEALVMGYDCMGWDLWKPNLRSAMESDMKAVSEGRKTKSEVLASCLQQMKDCFLDVKSH 679

Query: 2038 KEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYPQ 2217
            K KL E+MG+FFERS+    D+ H+ G  VR C  CQ+ +MVL+ RP+G+FMVGCL +P 
Sbjct: 680  KAKLFETMGIFFERSNTPGGDNLHLAGGKVRSCQQCQESEMVLRRRPDGSFMVGCLRFPL 739

Query: 2218 CRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSIL 2397
            CRNVVWLPG++SEA+VT ++CN C P PV+ IQFKFRRMEIPPN++ +HLGCIGGCD  L
Sbjct: 740  CRNVVWLPGAISEALVTEHVCNVCNPEPVFKIQFKFRRMEIPPNFDTEHLGCIGGCDETL 799

Query: 2398 KQLIEICGTGSRIPAR------ERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVS 2559
            ++LI+ICGTG R  +        +              Q  C  CRQ+GH+S++CP +  
Sbjct: 800  RELIQICGTGPRNLSSGSGTRGRQPTQFSGSAQRRNTSQVVCARCRQSGHSSNDCPQISR 859

Query: 2560 RSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAV 2739
                 R    ++++G   V C SC+ PC VRTANTENNRGRRFYKC  Q CNFF+WEDA+
Sbjct: 860  SQDAQRPGHGNSNSGGADVLCESCQMPCTVRTANTENNRGRRFYKCDRQECNFFIWEDAI 919

Query: 2740 ENGAGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFR 2919
             +G  G +  N + S                             FV+ TG+PVS R CF 
Sbjct: 920  GSGNRGASRVNGNRSSVRGGQAGRGRGRRGARSGAAT-------FVTATGEPVSDRRCFS 972

Query: 2920 CGDPAHFANACPNRG 2964
            CGDP+HFAN CPNRG
Sbjct: 973  CGDPSHFANVCPNRG 987


>ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Capsella rubella]
            gi|482548679|gb|EOA12873.1| hypothetical protein
            CARUB_v10025845mg [Capsella rubella]
          Length = 919

 Score = 1213 bits (3139), Expect = 0.0
 Identities = 578/911 (63%), Positives = 682/911 (74%), Gaps = 3/911 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHL 417
            + VLNVAEKPSVAKSV+GILSR  FR REGRS YNKIFEF Y I+GQ C ML TSV GHL
Sbjct: 9    VTVLNVAEKPSVAKSVAGILSRGSFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGHL 68

Query: 418  METEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREG 597
            ME EF DRY+KW+SCDP  LY+AP+ K+VPEDK DIK+TLEEEAR+  WL+LWLDCDREG
Sbjct: 69   MELEFSDRYRKWHSCDPADLYQAPVMKHVPEDKRDIKKTLEEEARKSDWLVLWLDCDREG 128

Query: 598  ENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLR 777
            ENI++EVV+VC      L I RA FSALIDR+IHEAVQNL  PN   ++AVD RQEIDLR
Sbjct: 129  ENIAFEVVDVCRAVKHNLFIRRAHFSALIDREIHEAVQNLRDPNQLFAEAVDARQEIDLR 188

Query: 778  IGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFWT 957
            IGASFTRFQTMLL+D F  D   ++R+ VISYGPCQFPTLGF+VERYWE  +HE EEFWT
Sbjct: 189  IGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWT 248

Query: 958  IKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQ-EQKFKYPPYPLS 1134
            I CSH S+E +A F+W+RG +FDY  A I+YEMC+EEPTATV  V    ++FKYPPYPL+
Sbjct: 249  INCSHQSEEGIATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYPPYPLN 308

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FR+S+  TMK AE+LYQ GFISYPRTETD+FS RT+L  +VEEQ  HP 
Sbjct: 309  TIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDAFSSRTDLRAMVEEQTRHPE 368

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WG+YA+RLL+P   LWR+PGNGGHDDKAHPPIHPTKFSSGES W+    NVYELVVRH+L
Sbjct: 369  WGAYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELVVRHYL 428

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA+ AET+V+IDI+GE+FSASGR I+++NYL+VYRF+SWGGS+IP Y +GQQF P
Sbjct: 429  ACVSQPAVAAETTVEIDISGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKGQQFIP 488

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            T+L LDS VT              MDKAGIGTDATMH+HIKKLLDR YA KD    F+PT
Sbjct: 489  TSLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSPT 548

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKP LR+ ME DM  VS+G K K E LE CLQQMKACFLDAR+
Sbjct: 549  NLGEALVMGYDDMGYELWKPNLRAIMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARV 608

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
             K KL+E+M +FFERS+ ++  +    GEVVRRC LC + DM L+   +GNFMVGC+ YP
Sbjct: 609  KKSKLLEAMTIFFERSNNTDEGENQTAGEVVRRCNLCNESDMALRKNRDGNFMVGCMNYP 668

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN VWLPG   EA VTTN+C SC PGPVY I FKFR++ IPP +  +HLGC+GGCD I
Sbjct: 669  QCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGFEVNHLGCVGGCDGI 728

Query: 2395 LKQLIEICGTGSRIPARER--XXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVSRSG 2568
            LKQLI+ICGTGSR  AR                 + N C+HC+Q GHAS NCPS VS S 
Sbjct: 729  LKQLIDICGTGSRSQARRAPDTVPPNNIRGSNTRQSNVCIHCQQRGHASSNCPSRVSASR 788

Query: 2569 RARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENG 2748
             +R    +  N E+TV C++C + C++RTANTE NRGR+F+ C +Q C+FF WED + N 
Sbjct: 789  NSRPTGTNPRNDESTVSCNTCGTQCVLRTANTEANRGRQFFSCPTQGCSFFAWEDGISNS 848

Query: 2749 AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGD 2928
            +G  N    S+S  +                          FVS TG+PVSG  CF CGD
Sbjct: 849  SG--NATTGSNSGGSGRRGNRGRGRGGRGGQSGGRRGSGTSFVSATGEPVSGIRCFSCGD 906

Query: 2929 PAHFANACPNR 2961
            P+HFANACPNR
Sbjct: 907  PSHFANACPNR 917


>ref|XP_006394227.1| hypothetical protein EUTSA_v10003618mg [Eutrema salsugineum]
            gi|557090866|gb|ESQ31513.1| hypothetical protein
            EUTSA_v10003618mg [Eutrema salsugineum]
          Length = 930

 Score = 1209 bits (3129), Expect = 0.0
 Identities = 584/916 (63%), Positives = 681/916 (74%), Gaps = 8/916 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHL 417
            + VLNVAEKPSVAKSV+GILSR  FR REGRS YNKIFEF Y I+GQ C ML TSV GHL
Sbjct: 9    VTVLNVAEKPSVAKSVAGILSRGSFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGHL 68

Query: 418  METEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREG 597
            ME EF DR++KW+SCDP  LY+AP+ K+VPEDK DIK+TLEEEAR+  WL+LWLDCDREG
Sbjct: 69   MELEFSDRFRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDREG 128

Query: 598  ENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLR 777
            ENI++EVV+VC      L I RA FSALIDR+IHEA QNL  PN   + AVD RQEIDLR
Sbjct: 129  ENIAFEVVDVCRAVKQNLFIRRAHFSALIDREIHEAAQNLREPNQLFAQAVDARQEIDLR 188

Query: 778  IGASFTRFQTMLLKDAFNFDCAT-DDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFW 954
            IGASFTRFQTMLLKD F+ D    ++R+ VISYGPCQFPTLGF+VERYWE  +HE EEFW
Sbjct: 189  IGASFTRFQTMLLKDRFSIDSTGGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFW 248

Query: 955  TIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQ-EQKFKYPPYPL 1131
            TI CSH S+E LA F+W+RG +FDY  A I+YEMC+ EPTATV  V    +KFKYPPYPL
Sbjct: 249  TINCSHESEEGLATFNWMRGHLFDYVSAVILYEMCVLEPTATVMNVPHPREKFKYPPYPL 308

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            +T+ELEKRASR+FR+S+  TMK AE+LYQ GFISYPRTETDSFS RT+L  +VEEQ  HP
Sbjct: 309  NTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLRAMVEEQTRHP 368

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
             WG YA+RLL+P    WR+PGNGGHDDKAHPPIHPTKFSSGES W+    NVYELVVRH+
Sbjct: 369  AWGPYAQRLLEPEGGHWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELVVRHY 428

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LACVSQPAI AET+V+IDIAGE+FSASGR I+++NYL+VYRF+SWGGS+IP Y +GQQF 
Sbjct: 429  LACVSQPAIAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKGQQFI 488

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            PT L LDS VT              MDKAGIGTDATMH+HIKKLLDR YA KD    F+P
Sbjct: 489  PTRLTLDSAVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSP 548

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYDDMGYELWKP LR+ ME DM  VS+G+K K E L+ CLQQMKACFLDAR
Sbjct: 549  TNLGEALVMGYDDMGYELWKPNLRAIMEHDMNEVSVGSKTKAEVLQTCLQQMKACFLDAR 608

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
            + K KL+E+M +FFERS+ ++  +    GEVVRRC LC + DM L+   +GNFMVGC+ Y
Sbjct: 609  VKKAKLLETMTIFFERSNNTDEGENQTAGEVVRRCNLCHESDMALRKNRDGNFMVGCMSY 668

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRN VWLPG   EA VT ++C SC P PVY I+FKFR++ IPP ++ +HLGC+GGCD 
Sbjct: 669  PQCRNAVWLPGPTLEASVTADVCQSCGPAPVYKIRFKFRQIGIPPGFDTNHLGCVGGCDD 728

Query: 2392 ILKQLIEICGTGSRIPARERXXXXXXXXXXXYARQ-NACVHCRQTGHASDNCPSLVSRSG 2568
            ILKQLI+ICGTGSR  AR               RQ N C+HC+Q GH S NCPS +S S 
Sbjct: 729  ILKQLIDICGTGSRSQARTAPGASSNNFQGGNIRQNNTCIHCQQRGHTSANCPSRISGSR 788

Query: 2569 RAR-SRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVEN 2745
              R +   +  N ETTV C++C +PC +RTANTE NRGRRF+ C SQ CNFF WED++ N
Sbjct: 789  NPRPTTGTNPGNDETTVSCNTCGTPCALRTANTEANRGRRFFSCPSQGCNFFAWEDSISN 848

Query: 2746 GAG----GFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRAC 2913
            G+G    G N+  S     A                          FVS TG+PVSGR C
Sbjct: 849  GSGNATAGSNSGGSGRRGRARGRGNRGGQSGGARGGGGGRGGGGTSFVSATGEPVSGRRC 908

Query: 2914 FRCGDPAHFANACPNR 2961
            F CGDP+HFANACPNR
Sbjct: 909  FSCGDPSHFANACPNR 924


>ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryza brachyantha]
          Length = 923

 Score = 1205 bits (3118), Expect = 0.0
 Identities = 587/916 (64%), Positives = 687/916 (75%), Gaps = 7/916 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSR--NHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTG 411
            IRVLNVAEKPSVAKSV+ ILSR     R REGRS YN++FEF Y+I G+ C ML TSVTG
Sbjct: 10   IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFGYSIGGRACHMLVTSVTG 69

Query: 412  HLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDR 591
            HLME EFDDR+++W+SCDP  L+ AP+RK VP+DK DIKRTLEEEAR CQWL+LWLDCDR
Sbjct: 70   HLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARNCQWLVLWLDCDR 129

Query: 592  EGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEID 771
            EGENI+YEV+++C+  NSRLNIWRARFSALIDR+IHEAVQ+LDRPN   +DAVD RQEID
Sbjct: 130  EGENIAYEVIDICSGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDARQEID 189

Query: 772  LRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEF 951
            LRIGASFTRFQTMLL+DAF  D   D+RN+++SYGPCQFPTLGF+VER+WE  +HE EEF
Sbjct: 190  LRIGASFTRFQTMLLRDAFVLDDTGDERNMILSYGPCQFPTLGFIVERFWEIQAHEPEEF 249

Query: 952  WTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPL 1131
            WTI CSH SDE  A F WIRG +FDY+ A ++YEMC+EEP ATV  V  ++K KYPPYPL
Sbjct: 250  WTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQEKLKYPPYPL 309

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            ST+EL+KRASR+FRMS+  TMK AE+LYQ GFISYPRTETD+FS  T+L  IV+EQ AHP
Sbjct: 310  STIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHSIVQEQTAHP 369

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
            VWG+YA+RLLDP ARLWR+P NGGHDDKAHPPIHPTKFS+GE+ W++  K +YELVVRHF
Sbjct: 370  VWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWSDNHKKLYELVVRHF 429

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LAC SQPA+GAET+V+IDIAGEQF+ASGRV++S+NYLDVYRFDSWGG+L+PTY  GQQF 
Sbjct: 430  LACCSQPAVGAETTVEIDIAGEQFNASGRVVLSKNYLDVYRFDSWGGTLLPTYTIGQQFI 489

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            PTTL LDSGVT              MDKAGIGTDATMH+HIKKLLDR YA KD    F+P
Sbjct: 490  PTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKDANTRFSP 549

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYD+MGYELWKPYLRS MEADM++VS+GTK K E LE CLQQMKACFLDAR
Sbjct: 550  TNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKAEVLENCLQQMKACFLDAR 609

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
             NK KL ++MG FF RSSR   + Q+ + E VR C  C + +MVLK RP G FMVGC G+
Sbjct: 610  ANKVKLFDAMGAFFARSSRPINETQNSI-EAVRPCAACNESEMVLKRRPTGEFMVGCRGF 668

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRNVVWLPGS+SEA VT  +C +C PGPVY IQFKFRR +IPP+++ DHLGCIGGCD 
Sbjct: 669  PQCRNVVWLPGSLSEASVTDQVCPTCAPGPVYKIQFKFRRRDIPPSFDVDHLGCIGGCDD 728

Query: 2392 ILKQLIEICGTGSR----IPARERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVS 2559
            ILK+L EI   GS      PAR +             RQ+     R     ++    +V+
Sbjct: 729  ILKELTEISRFGSHNQTATPARNQSQNPSGARQGA-PRQDLHTDFRPARQFTNGHTPVVN 787

Query: 2560 RSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAV 2739
              G   +    + N    V C+SC  PCI+RTANTE NRGR+FYKCQ  +C FF WED V
Sbjct: 788  PQGFRSTHTGSSGNASGQVQCTSCGEPCILRTANTEANRGRKFYKCQDPACGFFAWEDDV 847

Query: 2740 ENGA-GGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACF 2916
            +N    G      S S  AS                         FV+ TG+PV G +CF
Sbjct: 848  QNSVPRGRGRGGRSGSRQASASAGRRGGSQARGRRGRGRNADGMMFVAATGEPVHG-SCF 906

Query: 2917 RCGDPAHFANACPNRG 2964
             CGDP HFANACP+RG
Sbjct: 907  VCGDPTHFANACPSRG 922


>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
            lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
            ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score = 1203 bits (3113), Expect = 0.0
 Identities = 578/911 (63%), Positives = 681/911 (74%), Gaps = 3/911 (0%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSRNHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTGHL 417
            + VLNVAEKPSVAKSV+GILSR  FR REGRS YNKIFEF Y I+GQ C ML TSV GHL
Sbjct: 9    VTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGHL 68

Query: 418  METEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDREG 597
            ME EF +RY+KW+SCDP  LY+AP+ K+VPEDK DIK+TLEEEAR+  WL+LWLDCDREG
Sbjct: 69   MELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCDREG 128

Query: 598  ENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEIDLR 777
            ENI++EVV+VC      L I RA FSALIDRDIHEAVQNL  PN   ++AVD RQEIDLR
Sbjct: 129  ENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEIDLR 188

Query: 778  IGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEFWT 957
            IGASFTRFQTMLL+D F  D   ++R+ VISYGPCQFPTLGF+VERYWE  +HE EEFWT
Sbjct: 189  IGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWT 248

Query: 958  IKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQ-EQKFKYPPYPLS 1134
            I CSH S+E LA F+W+RG +FDY  A I+YEMC+EEPTATV  V    ++FKYPPYPL+
Sbjct: 249  INCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYPPYPLN 308

Query: 1135 TLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHPV 1314
            T+ELEKRASR+FR+S+  TMK AE+LYQ GFISYPRTETDSFS RT+L  +VEEQ+ HP 
Sbjct: 309  TIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLCAMVEEQRRHPA 368

Query: 1315 WGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHFL 1494
            WGSYA+RLL+P   LWR+PGNGGHDDKAHPPIHPTKFSSGES W+    NVYELVVRH+L
Sbjct: 369  WGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVYELVVRHYL 428

Query: 1495 ACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFTP 1674
            ACVSQPA  AET+V+IDIAGE+FSASGR I+++NYL+VYRF+SWGGS+IP Y +GQQF P
Sbjct: 429  ACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVYEKGQQFIP 488

Query: 1675 TTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAPT 1854
            TTL LDS VT              MDKAGIGTDATMH+HIKKLLDR YA KD    F+PT
Sbjct: 489  TTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKDANTRFSPT 548

Query: 1855 TLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDARL 2034
             LGEALVMGYDDMGYELWKP LR+ ME DM  VS+G K K E LE CLQQMKACFLDAR+
Sbjct: 549  NLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMKACFLDARV 608

Query: 2035 NKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGYP 2214
             K KL+E+M +FFERS+ ++  +    GEV+RRC LC + DM L+   +GNFMVGC+ YP
Sbjct: 609  KKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNFMVGCMNYP 668

Query: 2215 QCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDSI 2394
            QCRN VWLPG   EA VTT++C +C PGPVY I FKFR++ IPP ++ +HLGCIGGCD I
Sbjct: 669  QCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGFDVNHLGCIGGCDDI 728

Query: 2395 LKQLIEICGTGSRIPARERXXXXXXXXXXXY-ARQ-NACVHCRQTGHASDNCPSLVSRSG 2568
            LKQLI+ICGTGSR  AR                RQ N C+HC+Q GHAS NCPS  +   
Sbjct: 729  LKQLIDICGTGSRSQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRGHASANCPSRATAFR 788

Query: 2569 RARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAVENG 2748
             +R    +  N E+TV C++C + C++RTANTE NRGR+F+ C +Q C+FF WED++ N 
Sbjct: 789  NSRLTATNPRNDESTVSCNTCGTQCVLRTANTEANRGRQFFSCPTQGCSFFAWEDSINNS 848

Query: 2749 AGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVSGRACFRCGD 2928
            +G   T ++S                               FVS TG+PVSG  CF CGD
Sbjct: 849  SGNATTGSNSGGS----GRRGRGRGGRGGQSGGGRRNSGTSFVSATGEPVSGIRCFSCGD 904

Query: 2929 PAHFANACPNR 2961
            P+HFAN CPNR
Sbjct: 905  PSHFANVCPNR 915


>ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
            gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa
            Japonica Group]
          Length = 928

 Score = 1200 bits (3104), Expect = 0.0
 Identities = 584/921 (63%), Positives = 685/921 (74%), Gaps = 12/921 (1%)
 Frame = +1

Query: 238  IRVLNVAEKPSVAKSVSGILSR--NHFRVREGRSIYNKIFEFTYTIHGQQCEMLFTSVTG 411
            IRVLNVAEKPSVAKSV+ ILSR     R REGRS YN++FEF Y+I G+ C ML TSVTG
Sbjct: 10   IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRACHMLVTSVTG 69

Query: 412  HLMETEFDDRYKKWNSCDPVQLYEAPIRKYVPEDKTDIKRTLEEEARRCQWLILWLDCDR 591
            HLME EFDDR+++W+SCDP  L+ AP+RK VP+DK DIKRTLEEEAR+CQWL+LWLDCDR
Sbjct: 70   HLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVLWLDCDR 129

Query: 592  EGENISYEVVNVCNTTNSRLNIWRARFSALIDRDIHEAVQNLDRPNPFLSDAVDVRQEID 771
            EGENI+YEV+++C   NSRLNIWRARFSALIDR+IHEAVQ+LDRPN   +DAVD RQEID
Sbjct: 130  EGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDARQEID 189

Query: 772  LRIGASFTRFQTMLLKDAFNFDCATDDRNLVISYGPCQFPTLGFVVERYWERASHEQEEF 951
            LRIGASFTRFQTMLLKDAF  D   DDRN+++SYGPCQFPTLGF+VER+WE  +HE EEF
Sbjct: 190  LRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEPEEF 249

Query: 952  WTIKCSHNSDERLAEFSWIRGRIFDYTCASIVYEMCIEEPTATVTKVIQEQKFKYPPYPL 1131
            WTI CSH SDE  A F WIRG +FDY+ A ++YEMC+EEP ATV  V  ++K KYPPYPL
Sbjct: 250  WTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQEKLKYPPYPL 309

Query: 1132 STLELEKRASRHFRMSATETMKAAEDLYQTGFISYPRTETDSFSERTNLEGIVEEQKAHP 1311
            ST+EL+KRASR+FRMS+  TMK AE+LYQ GFISYPRTETD+FS  T+L  IV EQ AHP
Sbjct: 310  STIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHSIVHEQVAHP 369

Query: 1312 VWGSYAERLLDPGARLWRHPGNGGHDDKAHPPIHPTKFSSGESRWTEQQKNVYELVVRHF 1491
             WG+YA+RLLDP ARLWR+P NGGHDDKAHPPIHPTKFS+GE+ WT+  K +YELVVRHF
Sbjct: 370  NWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKKLYELVVRHF 429

Query: 1492 LACVSQPAIGAETSVKIDIAGEQFSASGRVIISRNYLDVYRFDSWGGSLIPTYAEGQQFT 1671
            LAC SQPA+GAET+V+IDIAGEQF+ASGRV++++NYLDVYRFDSWGG+L+PTY  GQQF 
Sbjct: 430  LACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTYIIGQQFV 489

Query: 1672 PTTLNLDSGVTNXXXXXXXXXXXXAMDKAGIGTDATMHEHIKKLLDRFYAIKDERFHFAP 1851
            PTTL LDSG+T              MDKAGIGTDATMH+HIKKLLDR YA KD    F+P
Sbjct: 490  PTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYATKDANTRFSP 549

Query: 1852 TTLGEALVMGYDDMGYELWKPYLRSAMEADMRAVSMGTKRKEEALEACLQQMKACFLDAR 2031
            T LGEALVMGYD+MGYELWKPYLRS MEADM++VS+GTK K E LE CLQQMKACFLDAR
Sbjct: 550  TNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQMKACFLDAR 609

Query: 2032 LNKEKLIESMGVFFERSSRSNVDDQHVVGEVVRRCYLCQQYDMVLKHRPEGNFMVGCLGY 2211
             NK KL ++MG FF RSSR   + Q+ + E VR C  C + +M LK RP G FMVGC G+
Sbjct: 610  ANKVKLFDAMGTFFARSSRPVNETQNSI-ETVRPCAACNESEMFLKQRPTGEFMVGCRGF 668

Query: 2212 PQCRNVVWLPGSVSEAVVTTNICNSCTPGPVYMIQFKFRRMEIPPNYNADHLGCIGGCDS 2391
            PQCRNVVWLP S+S A VT  +C +C PGPVY IQFKFRR +IPPN++ DHLGCIGGCD 
Sbjct: 669  PQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHLGCIGGCDD 728

Query: 2392 ILKQLIEICGTGSR----IPARERXXXXXXXXXXXYARQNACVHCRQTGHASDNCPSLVS 2559
            ILK+L+E+   GS      PAR +            +RQ+           ++    +V+
Sbjct: 729  ILKELMELSRFGSHSQTATPARNQSQTASGVRQGS-SRQDLHTSFHPAVQFTNGQTPVVN 787

Query: 2560 RSGRARSRRMDTSNGETTVFCSSCESPCIVRTANTENNRGRRFYKCQSQSCNFFVWEDAV 2739
              G   +    + N    V C+SC  PC++RTANTE NRGR+FYKCQ+ +C FF WED V
Sbjct: 788  PQGFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKCQNLACGFFAWEDDV 847

Query: 2740 EN------GAGGFNTRNSSSSHPASXXXXXXXXXXXXXXXXXXXXXXXXXFVSPTGDPVS 2901
            EN      G  G   R+SS    AS                         FV+ TG+PV 
Sbjct: 848  ENSAPRGRGGRGRGGRSSSRQSSASASAGRRGGTQGRGRRGRGRNADGMMFVAATGEPVY 907

Query: 2902 GRACFRCGDPAHFANACPNRG 2964
            G +CF CGDP HFAN CPN G
Sbjct: 908  G-SCFICGDPTHFANVCPNLG 927