BLASTX nr result
ID: Rheum21_contig00005010
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00005010
(245 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002871281.1| structural maintenance of chromosomes family... 124 2e-26
ref|XP_006394503.1| hypothetical protein EUTSA_v10003566mg [Eutr... 122 6e-26
ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabi... 122 6e-26
gb|ACQ84165.1| truncated structural maintenance of chromosomes f... 122 6e-26
ref|XP_006279856.1| hypothetical protein CARUB_v10028478mg [Caps... 120 2e-25
gb|EMJ20939.1| hypothetical protein PRUPE_ppa026132mg, partial [... 120 2e-25
ref|XP_002303494.1| hypothetical protein POPTR_0003s10690g [Popu... 119 4e-25
ref|XP_002866437.1| hypothetical protein ARALYDRAFT_496305 [Arab... 117 1e-24
ref|NP_200954.1| protein SMC6B [Arabidopsis thaliana] gi|7533391... 117 2e-24
ref|XP_006421634.1| hypothetical protein CICLE_v100042042mg, par... 116 4e-24
gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]... 114 2e-23
ref|XP_006490140.1| PREDICTED: structural maintenance of chromos... 113 2e-23
ref|XP_002462109.1| hypothetical protein SORBIDRAFT_02g019360 [S... 113 3e-23
ref|XP_006399247.1| hypothetical protein EUTSA_v10012532mg [Eutr... 112 5e-23
ref|XP_006286959.1| hypothetical protein CARUB_v10000108mg [Caps... 111 9e-23
gb|EXC13936.1| hypothetical protein L484_006634 [Morus notabilis] 111 1e-22
gb|AHB53235.1| SMC6 protein [Zea mays] 111 1e-22
tpg|DAA60921.1| TPA: hypothetical protein ZEAMMB73_860226 [Zea m... 111 1e-22
tpg|DAA60920.1| TPA: hypothetical protein ZEAMMB73_860226 [Zea m... 111 1e-22
ref|NP_001169562.1| hypothetical protein [Zea mays] gi|224030099... 111 1e-22
>ref|XP_002871281.1| structural maintenance of chromosomes family protein [Arabidopsis
lyrata subsp. lyrata] gi|297317118|gb|EFH47540.1|
structural maintenance of chromosomes family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1063
Score = 124 bits (310), Expect = 2e-26
Identities = 56/81 (69%), Positives = 70/81 (86%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIKNGC YA+V VE+KNQG+DA+KP++YGD +I+ERRI+
Sbjct: 61 ALCVAFGCRARGTQRAATLKDFIKNGCSYALVHVELKNQGEDAFKPEIYGDTLIIERRIS 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ + ++D +GRKISS RE
Sbjct: 121 DSTSLTVLKDHQGRKISSRRE 141
>ref|XP_006394503.1| hypothetical protein EUTSA_v10003566mg [Eutrema salsugineum]
gi|557091142|gb|ESQ31789.1| hypothetical protein
EUTSA_v10003566mg [Eutrema salsugineum]
Length = 1057
Score = 122 bits (305), Expect = 6e-26
Identities = 54/81 (66%), Positives = 70/81 (86%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA+ TQRA+TLKDFIK GC YAVV VEMKNQG+DA+KPD+YGD II+ERRIT
Sbjct: 61 ALCVAFGCRAKGTQRASTLKDFIKTGCSYAVVHVEMKNQGEDAFKPDIYGDIIIIERRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
++ ++ ++D +G+K+ S +E
Sbjct: 121 ESTSSTILKDHDGKKVCSRKE 141
>ref|NP_196383.1| structural maintenance of chromosomes 6A [Arabidopsis thaliana]
gi|75171524|sp|Q9FLR5.1|SMC6A_ARATH RecName:
Full=Structural maintenance of chromosomes protein 6A
gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis
thaliana] gi|332003807|gb|AED91190.1| structural
maintenance of chromosomes 6A [Arabidopsis thaliana]
Length = 1058
Score = 122 bits (305), Expect = 6e-26
Identities = 54/81 (66%), Positives = 70/81 (86%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIK GC YA+V+VE+KNQG+DA+KP++YGD +I+ERRI+
Sbjct: 62 ALCVAFGCRARGTQRAATLKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRIS 121
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ + ++D +GRKISS +E
Sbjct: 122 DSTSLTVLKDHQGRKISSRKE 142
>gb|ACQ84165.1| truncated structural maintenance of chromosomes family protein 6A
[Arabidopsis thaliana]
Length = 876
Score = 122 bits (305), Expect = 6e-26
Identities = 54/81 (66%), Positives = 70/81 (86%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIK GC YA+V+VE+KNQG+DA+KP++YGD +I+ERRI+
Sbjct: 62 ALCVAFGCRARGTQRAATLKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRIS 121
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ + ++D +GRKISS +E
Sbjct: 122 DSTSLTVLKDHQGRKISSRKE 142
>ref|XP_006279856.1| hypothetical protein CARUB_v10028478mg [Capsella rubella]
gi|482548560|gb|EOA12754.1| hypothetical protein
CARUB_v10028478mg [Capsella rubella]
Length = 1057
Score = 120 bits (300), Expect = 2e-25
Identities = 55/81 (67%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIK GC YAVV VEMKNQG+DA+KP++YG+ II+ERRIT
Sbjct: 61 ALCVAFGCRARGTQRAATLKDFIKTGCSYAVVHVEMKNQGEDAFKPEIYGEIIIIERRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
++ + ++D GRK+S+ R+
Sbjct: 121 ESTTSTVLKDYLGRKVSNRRD 141
>gb|EMJ20939.1| hypothetical protein PRUPE_ppa026132mg, partial [Prunus persica]
Length = 418
Score = 120 bits (300), Expect = 2e-25
Identities = 52/81 (64%), Positives = 70/81 (86%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA+ TQRA+TLKDFIK GC YAVV VE+KNQG+DA+KP++YGD I++ERRI+
Sbjct: 56 ALCVAFGCRAKGTQRASTLKDFIKTGCSYAVVHVELKNQGEDAFKPEIYGDVIVIERRIS 115
Query: 63 KAANTVNIRDREGRKISSGRE 1
A T ++D++G+K++S +E
Sbjct: 116 GTATTTVLKDQQGKKVASRKE 136
>ref|XP_002303494.1| hypothetical protein POPTR_0003s10690g [Populus trichocarpa]
gi|222840926|gb|EEE78473.1| hypothetical protein
POPTR_0003s10690g [Populus trichocarpa]
Length = 1046
Score = 119 bits (298), Expect = 4e-25
Identities = 51/81 (62%), Positives = 72/81 (88%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALC+AFGCRA+ TQRAATLKDFIK GC YAVV VE++N+G++++KPD+YGD+II+ERRI
Sbjct: 62 ALCIAFGCRAKGTQRAATLKDFIKTGCSYAVVEVEVRNRGEESFKPDIYGDSIIIERRIN 121
Query: 63 KAANTVNIRDREGRKISSGRE 1
++++T ++D +GRK++S RE
Sbjct: 122 QSSSTTVLKDHQGRKVASRRE 142
>ref|XP_002866437.1| hypothetical protein ARALYDRAFT_496305 [Arabidopsis lyrata subsp.
lyrata] gi|297312272|gb|EFH42696.1| hypothetical protein
ARALYDRAFT_496305 [Arabidopsis lyrata subsp. lyrata]
Length = 1057
Score = 117 bits (294), Expect = 1e-24
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIK GC YAVV VEMKN G+DA+KP++YG+ II+ERRIT
Sbjct: 61 ALCVAFGCRARGTQRAATLKDFIKTGCSYAVVHVEMKNNGEDAFKPEIYGEVIIIERRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ + ++D G+K+S+ RE
Sbjct: 121 DSTTSTVLKDYLGKKVSNKRE 141
>ref|NP_200954.1| protein SMC6B [Arabidopsis thaliana]
gi|75333915|sp|Q9FII7.1|SMC6B_ARATH RecName:
Full=Structural maintenance of chromosomes protein 6B;
AltName: Full=DNA repair protein RAD18; Short=AtRAD18
gi|10177176|dbj|BAB10445.1| SMC-like protein
[Arabidopsis thaliana] gi|332010088|gb|AED97471.1|
protein SMC6B [Arabidopsis thaliana]
Length = 1057
Score = 117 bits (293), Expect = 2e-24
Identities = 54/81 (66%), Positives = 67/81 (82%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRAR TQRAATLKDFIK GC YAVV VEMKN G+DA+KP++YG II+ERRIT
Sbjct: 61 ALCVAFGCRARGTQRAATLKDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A ++D G+K+S+ R+
Sbjct: 121 ESATATVLKDYLGKKVSNKRD 141
>ref|XP_006421634.1| hypothetical protein CICLE_v100042042mg, partial [Citrus
clementina] gi|557523507|gb|ESR34874.1| hypothetical
protein CICLE_v100042042mg, partial [Citrus clementina]
Length = 484
Score = 116 bits (290), Expect = 4e-24
Identities = 48/81 (59%), Positives = 72/81 (88%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALC+AFGCRA+ TQRAATLKDFIK GC YA+V VE+KN+G+DA+KP+++GD+II+ERRIT
Sbjct: 122 ALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 181
Query: 63 KAANTVNIRDREGRKISSGRE 1
++ +T ++D +G++++S ++
Sbjct: 182 ESTSTTVLKDHQGKRVASRKQ 202
>gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]
gi|5880616|gb|AAD54770.1|AF120933_1 SMC-like protein
[Arabidopsis thaliana]
Length = 1055
Score = 114 bits (284), Expect = 2e-23
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALC+AFGCRAR TQRAATLKDFIK GC YAVV VEMKN G+DA+K ++YG II+ERRIT
Sbjct: 61 ALCIAFGCRARGTQRAATLKDFIKTGCSYAVVQVEMKNSGEDAFKSEIYGGVIIIERRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A ++D G+K+S+ R+
Sbjct: 121 ESATATVLKDYLGKKVSNKRD 141
>ref|XP_006490140.1| PREDICTED: structural maintenance of chromosomes protein 6B-like
[Citrus sinensis]
Length = 1058
Score = 113 bits (283), Expect = 2e-23
Identities = 47/81 (58%), Positives = 71/81 (87%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALC+AFGCRA+ TQRAATLKDFIK GC YA+V VE+KN+G+DA+KP+++GD+II+ RRIT
Sbjct: 61 ALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIGRRIT 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
++ +T ++D +G++++S ++
Sbjct: 121 ESTSTTVLKDHQGKRVASRKQ 141
>ref|XP_002462109.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor]
gi|241925486|gb|EER98630.1| hypothetical protein
SORBIDRAFT_02g019360 [Sorghum bicolor]
Length = 1039
Score = 113 bits (282), Expect = 3e-23
Identities = 48/81 (59%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA++TQRAA+LKDFIKNGC YA + V++ N G+DA+KP++YGD II+ERRIT
Sbjct: 45 ALCVAFGCRAKNTQRAASLKDFIKNGCSYAAITVDINNHGEDAFKPEVYGDTIILERRIT 104
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A + ++D+ GRK++ ++
Sbjct: 105 ESAGSTVLKDQHGRKVAHRKD 125
>ref|XP_006399247.1| hypothetical protein EUTSA_v10012532mg [Eutrema salsugineum]
gi|557100337|gb|ESQ40700.1| hypothetical protein
EUTSA_v10012532mg [Eutrema salsugineum]
Length = 1057
Score = 112 bits (280), Expect = 5e-23
Identities = 50/81 (61%), Positives = 67/81 (82%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA+ TQRA+TLKDFIK GC A+V VEM NQG+DA+KP++YGD +I+ERRI+
Sbjct: 61 ALCVAFGCRAKGTQRASTLKDFIKTGCSDALVHVEMNNQGEDAFKPEIYGDTLIIERRIS 120
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ ++ ++D +G KIS+ RE
Sbjct: 121 DSTSSTFLKDHQGEKISNRRE 141
>ref|XP_006286959.1| hypothetical protein CARUB_v10000108mg [Capsella rubella]
gi|482555665|gb|EOA19857.1| hypothetical protein
CARUB_v10000108mg [Capsella rubella]
Length = 1052
Score = 111 bits (278), Expect = 9e-23
Identities = 50/81 (61%), Positives = 65/81 (80%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA+ TQRA LKDFIK GC YA+V VE+KNQG DA+KP++YGD +I+ERRI+
Sbjct: 57 ALCVAFGCRAKGTQRATALKDFIKIGCSYALVHVELKNQGPDAFKPEIYGDTLIIERRIS 116
Query: 63 KAANTVNIRDREGRKISSGRE 1
+ + ++D +GRK+S RE
Sbjct: 117 DSTSFTVLKDHQGRKVSIRRE 137
>gb|EXC13936.1| hypothetical protein L484_006634 [Morus notabilis]
Length = 1025
Score = 111 bits (277), Expect = 1e-22
Identities = 50/81 (61%), Positives = 65/81 (80%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA+ TQRA+TLKDFIK C YA+V VE+KN+G DA+KP +YGDAI +ERRIT
Sbjct: 56 ALCVAFGCRAKGTQRASTLKDFIKKNCGYALVQVEIKNEGGDAFKPQIYGDAITIERRIT 115
Query: 63 KAANTVNIRDREGRKISSGRE 1
+A ++D GRK++S ++
Sbjct: 116 ASAGPTVLKDNRGRKVASRKD 136
>gb|AHB53235.1| SMC6 protein [Zea mays]
Length = 1040
Score = 111 bits (277), Expect = 1e-22
Identities = 47/81 (58%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA++TQRAA+LKDFIK GC YA + V++ N G+DA+KP++YGD II+ERRIT
Sbjct: 45 ALCVAFGCRAKNTQRAASLKDFIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRIT 104
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A++ ++D+ GRK++ ++
Sbjct: 105 ESASSTVLKDQHGRKVAHRKD 125
>tpg|DAA60921.1| TPA: hypothetical protein ZEAMMB73_860226 [Zea mays]
Length = 523
Score = 111 bits (277), Expect = 1e-22
Identities = 47/81 (58%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA++TQRAA+LKDFIK GC YA + V++ N G+DA+KP++YGD II+ERRIT
Sbjct: 45 ALCVAFGCRAKNTQRAASLKDFIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRIT 104
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A++ ++D+ GRK++ ++
Sbjct: 105 ESASSTVLKDQHGRKVAHRKD 125
>tpg|DAA60920.1| TPA: hypothetical protein ZEAMMB73_860226 [Zea mays]
Length = 992
Score = 111 bits (277), Expect = 1e-22
Identities = 47/81 (58%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA++TQRAA+LKDFIK GC YA + V++ N G+DA+KP++YGD II+ERRIT
Sbjct: 45 ALCVAFGCRAKNTQRAASLKDFIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRIT 104
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A++ ++D+ GRK++ ++
Sbjct: 105 ESASSTVLKDQHGRKVAHRKD 125
>ref|NP_001169562.1| hypothetical protein [Zea mays] gi|224030099|gb|ACN34125.1| unknown
[Zea mays] gi|414884905|tpg|DAA60919.1| TPA:
hypothetical protein ZEAMMB73_860226 [Zea mays]
Length = 1040
Score = 111 bits (277), Expect = 1e-22
Identities = 47/81 (58%), Positives = 69/81 (85%)
Frame = -3
Query: 243 ALCVAFGCRARSTQRAATLKDFIKNGCDYAVVWVEMKNQGQDAYKPDLYGDAIIVERRIT 64
ALCVAFGCRA++TQRAA+LKDFIK GC YA + V++ N G+DA+KP++YGD II+ERRIT
Sbjct: 45 ALCVAFGCRAKNTQRAASLKDFIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRIT 104
Query: 63 KAANTVNIRDREGRKISSGRE 1
++A++ ++D+ GRK++ ++
Sbjct: 105 ESASSTVLKDQHGRKVAHRKD 125