BLASTX nr result
ID: Rheum21_contig00002507
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00002507
(6152 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2812 0.0
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 2763 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 2763 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2761 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2757 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2757 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 2756 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 2756 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 2756 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 2756 0.0
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 2756 0.0
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus... 2754 0.0
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo... 2751 0.0
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe... 2749 0.0
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 2746 0.0
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su... 2745 0.0
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su... 2742 0.0
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 2741 0.0
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 2741 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 2736 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2812 bits (7290), Expect = 0.0
Identities = 1388/1538 (90%), Positives = 1461/1538 (94%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQA +IRNPK+RLKK L+A GDEI+ Q D+ EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK+ +KK DD EQLPEPVERKQQLSAERVL+VLKRISDEDC LLGLNPKY R
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGK+P PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
LLR SAWH + E GF+TPGDTQV +EKGELL+GTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQNGFS+GIGDTIADAATME IN+TIS AKN+VK+LIR AQE++L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMM+SFENRVNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK +FD++F+YEIDD++WNP YM P+H+EDL+TIREFRNVFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIATTG+ SWP+PVNL RL+ NAQK FK+D RR S MHPMEIVEAVDKLQE+LKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D +SMEAQKNATLFFNILLRST ASKRVLKEYRL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
PD+SK K+RAKNVQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+QDESAEDDVFLK+IESNMLTEMALRGIPDINKVFIKSGK++ FDE+EGFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN+ MLQHAIELQLPSYMEGLDFG TP RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP+YLLSPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITD-AQFSPYVGGMAFSP 1537
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 2763 bits (7162), Expect = 0.0
Identities = 1366/1541 (88%), Positives = 1447/1541 (93%), Gaps = 2/1541 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSV+QIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+I+NPK RLKK L+A GDEIDVQGQD EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK+ +KK DDQEQLPEPVERKQ L+AERVLSVLKRISDEDCQLLGL+PKY R
Sbjct: 181 EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQER+GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP P I+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+R +AWH D E G +TPGDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA+TME IN+TIS AKN+VK LIR+AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMM+SFENRVNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK++FD++FRYE DD+ WNP YM DH+EDLR IRE R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKR--RRSGMHPMEIVEAVDKLQEKLKV 2915
L TEIATTG+ +WP+PVNL RL+ NAQK FKID R R S +HPME VEAVDKLQE+LKV
Sbjct: 961 LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020
Query: 2914 VPGEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVA 2735
VPG+D LS+EAQKNATLFF ILLRSTLASKRVL+EYRLSREAFDWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080
Query: 2734 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 2555
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140
Query: 2554 LKPDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDE 2375
LKP+ +K K++AKNVQCALEYTTLRSVT ATEVWYDPDPMSTIIEED DFVKSYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200
Query: 2374 EISPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIR 2195
E++P+KISPWLLRIELNREMM+DKKL+MADIA KIN EFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260
Query: 2194 IMNDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGF 2015
IMNDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK+ K+S+FDE+EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320
Query: 2014 KTEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISF 1835
KT EWMLDTEGVNLLAVMC+E+VDAR+TTSNHLIEVIEV+GIEAVRR+LLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380
Query: 1834 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1655
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440
Query: 1654 DYLRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISG 1475
DYLRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYMEGLDFG TP RSP+SG
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG 1500
Query: 1474 TPYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSPA 1352
TPYH+GMMSP L+SPN R+SP+ D + FSPYVGGMAFSP+
Sbjct: 1501 TPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAFSPS 1540
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 2763 bits (7161), Expect = 0.0
Identities = 1372/1538 (89%), Positives = 1440/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MDIRFP+SPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRIRNPK+RLKK L+A GDEID+ GQDT EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ LSAERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP PAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+RYS+WH + E G +TPGDT V +EKGELL+GTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA+TMETIN TIS AK VK+LIREAQEKKL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMMDSFENRVNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK++FD++FRYE DD++W P YM + +EDL+TIREFRNVF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIATTG++S PLPVNL RL+ NAQK FK+D RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS EAQKNATL FNILLRST ASKRVL+EYRLSREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
D+ K K+RAK+VQCALEYTTLRSVT ATEVWYDPDPMSTIIEED DFVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+ +KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGEIQDESAEDDVFLK+IESNMLTEM LRGIPDINKVFIK+ K+ FDEN+GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYM+GLDFG TP RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEG+MSPSYLLSPN RLSP+SD QFSPYVGGMAFSP
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSD-AQFSPYVGGMAFSP 1537
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2761 bits (7157), Expect = 0.0
Identities = 1364/1541 (88%), Positives = 1449/1541 (94%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIEFSETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+I+NPK+RLKK L+A GD+IDV QDT EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISD+DC+LLG NPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+R +AWH D E G +TPGDT V +EKGELLSGT+CKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQNGFS+GIGDTIADAATME IN+TIS AKN VK+LIR+AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E +PGRTMM+SFEN VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FD++F+YE+DD++WNP YM DHI+DL+ IRE R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIATTG++SWPLPVNL RL+ NAQK FK+DKRR S +HPME VEAVDKLQE+LKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D LS+EAQKNATLFF ILLRSTLASKRVL++YRL+REAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P+ +K K+RAKNVQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
SP+KISPWLLRIELNREMMVDKKL+MADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK K+S FDENEGFKT
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EWMLDTEGVNLLAVMC+E+VDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN++ML++AIELQLPSYM+GLDFG TP RSP+S TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSPAMT 1346
YH+GMMSPSYLLSP+ RLSP++D QFSPYV GM FSP ++
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTD-AQFSPYVSGMPFSPTLS 1540
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2757 bits (7146), Expect = 0.0
Identities = 1365/1538 (88%), Positives = 1442/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRI+NPK+RL+K L+A GDEIDVQGQD+ +PVKKSRGGCGAQQP +I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKM AEYK +KK DD EQLPEPVERKQ L+AERVL +LKRI+DEDC+LLGLNPKY R
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMNTLMWWEDFDGK+P PAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R SAWH + E G +TPGDT V +EKGELLSGTLCKK LGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADAATME IN+TIS AKN+VK LI++AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMMDSFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK +F+++FRYE +D++W P+YM P+H+EDL+TIREFRNVF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIATTGE SWP+PVNL RL+ NAQK FKID RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVL EYRL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P+ +K K+RAK VQCALEYTTLRSVT ATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA+IA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK++ FDENEGFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTGGCALYLN+ ML++AIELQLPSY++GLDFG TP RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEGMMSP+YLLSPN RLSP SD QFSPYVGGMAFSP
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISD-AQFSPYVGGMAFSP 1537
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2757 bits (7146), Expect = 0.0
Identities = 1365/1538 (88%), Positives = 1442/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRI+NPK+RL+K L+A GDEIDVQGQD+ +PVKKSRGGCGAQQP +I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKM AEYK +KK DD EQLPEPVERKQ L+AERVL +LKRI+DEDC+LLGLNPKY R
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMNTLMWWEDFDGK+P PAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R SAWH + E G +TPGDT V +EKGELLSGTLCKK LGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADAATME IN+TIS AKN+VK LI++AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMMDSFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK +F+++FRYE +D++W P+YM P+H+EDL+TIREFRNVF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIATTGE SWP+PVNL RL+ NAQK FKID RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVL EYRL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P+ +K K+RAK VQCALEYTTLRSVT ATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA+IA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK++ FDENEGFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTGGCALYLN+ ML++AIELQLPSY++GLDFG TP RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEGMMSP+YLLSPN RLSP SD QFSPYVGGMAFSP
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISD-AQFSPYVGGMAFSP 1537
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 2756 bits (7145), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1443/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+IRNPK+RLKK L+A GDEIDV GQD EP+KK++GGCGAQQP TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R +AWH D ++G LT GDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA TMETINDTIS AKN+VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK FR+E+D+++WNP+YM ++I+DL+TI+E R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIAT+G++SWPLPVNL RL+ NAQK FK+D RR S MHPME+VEAVDKLQE+LKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P ++ K+RAKNVQCALEYTTLRSVT ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA +A KIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK + +D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG C+LYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP YL SPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSP 1537
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 2756 bits (7145), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1443/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+IRNPK+RLKK L+A GDEIDV GQD EP+KK++GGCGAQQP TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R +AWH D ++G LT GDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA TMETINDTIS AKN+VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK FR+E+D+++WNP+YM ++I+DL+TI+E R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIAT+G++SWPLPVNL RL+ NAQK FK+D RR S MHPME+VEAVDKLQE+LKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P ++ K+RAKNVQCALEYTTLRSVT ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA +A KIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK + +D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG C+LYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP YL SPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSP 1537
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 2756 bits (7145), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1443/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+IRNPK+RLKK L+A GDEIDV GQD EP+KK++GGCGAQQP TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R +AWH D ++G LT GDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA TMETINDTIS AKN+VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK FR+E+D+++WNP+YM ++I+DL+TI+E R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIAT+G++SWPLPVNL RL+ NAQK FK+D RR S MHPME+VEAVDKLQE+LKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P ++ K+RAKNVQCALEYTTLRSVT ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA +A KIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK + +D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG C+LYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP YL SPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSP 1537
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 2756 bits (7145), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1443/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+IRNPK+RLKK L+A GDEIDV GQD EP+KK++GGCGAQQP TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R +AWH D ++G LT GDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA TMETINDTIS AKN+VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK FR+E+D+++WNP+YM ++I+DL+TI+E R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIAT+G++SWPLPVNL RL+ NAQK FK+D RR S MHPME+VEAVDKLQE+LKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P ++ K+RAKNVQCALEYTTLRSVT ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA +A KIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK + +D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG C+LYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP YL SPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSP 1537
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 2756 bits (7144), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1442/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+IRNPK+RLKK L+A GDEIDV GQD EP+KK +GGCGAQQP TI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ L+AERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R +AWH D ++G LT GDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA TMETINDTIS AKN+VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK FR+E+D+++WNP+YM ++I+DL+TI+E R+VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIAT+G++SWPLPVNL RL+ NAQK FK+D RR S MHPME+VEAVDKLQE+LKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS+EAQKNATLFFNILLRST ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P ++ K+RAKNVQCALEYTTLRSVT ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+P+KISPWLLRIELNREMMVDKKLSMA +A KIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK + +D+NEGFK+
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG C+LYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YH+GMMSP YL SPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSP 1537
>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
Length = 1834
Score = 2754 bits (7138), Expect = 0.0
Identities = 1365/1538 (88%), Positives = 1439/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MDIRFP+SPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRIRNPK+RLKK L+A GDEID+ GQDT EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMK+IAEYK +KK DDQEQLPEPVERKQ LSAERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMNTLMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPK IN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+RYS+WH + E G +TPGDT V +EKGELL+GTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA+TMETIN TIS AK VK+LIR+AQEKKL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMMDSFENRVNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK++FD++FRYE DD++W P YM + +EDL+TIREFRNVF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIATTG++S PLPVNL RL+ NAQK FK+D RR S MHPMEIVEA+DKLQE+L+VVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS EAQKNATL FNILLRST ASKRVL+EYRLSREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
PD+ K K+RAK+VQCALEYTTLRSVT ATEVWYDP+PMSTII+ED+DFVKSYYEMPDEE+
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+ +KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGEIQDESAEDDVFLK+IESNMLTEM LRGIPDINKVFIK+ K+ FDE+EGFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYM+GLDFG TP RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEG+MSPSYLLSPN RLSP+SD QFSPYVGGMAFSP
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSD-AQFSPYVGGMAFSP 1537
>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 2751 bits (7131), Expect = 0.0
Identities = 1365/1539 (88%), Positives = 1442/1539 (93%), Gaps = 1/1539 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADE++HK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQAL+I+NPK+RLKK L+A GDEIDVQGQDT EPVKKSRGGCGAQQP +I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
+GMKMIAEYK +K+ DDQEQLPEPVERKQ L+AERVLSVLKRISDEDCQLLGLNPK+ R
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTH LAMIIRHN+NLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
LLR SAWH + E GF+TPGDTQV +EKGELLSGTLCKK LGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADAATME IN+TIS AK +VK LI +AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
E EPGRTMM+SFEN+VNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNP-DYMQPDHIEDLRTIREFRNVFDAEVQKLEADRY 3092
L SLK+KKS+FD++FRY IDD+ WNP YM P+HIEDLRTI+E R+VF+AEVQKL+ADRY
Sbjct: 901 LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960
Query: 3091 QLATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVV 2912
QL TEIA TG+++WPLPVNL RL+ NAQK FK+D RR S +HP+EIV++VDKLQE+LKVV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 2911 PGEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAP 2732
PG D LS+EAQKNATLFF+ILLRSTLASKRVL+EYRL++EAF+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 2731 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 2552
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 2551 KPDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 2372
P+ SK K++AKNVQCALEYTTLRSVTHATEVWYDPDP STIIEEDIDFVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200
Query: 2371 ISPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRI 2192
++P+KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 2191 MNDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFK 2012
MNDE PKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK K S FDE +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 2011 TEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1832
T EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 1831 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1652
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAESD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 1651 YLRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGT 1472
YLRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYMEGL+FG TP RSP+SGT
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1500
Query: 1471 PYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
PYHEGMMSPSYLLSPN RLSP +D QFSPYVGGMAFSP
Sbjct: 1501 PYHEGMMSPSYLLSPNLRLSPITD-AQFSPYVGGMAFSP 1538
>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 2749 bits (7126), Expect = 0.0
Identities = 1364/1538 (88%), Positives = 1436/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MDIRFP+SPAEVAKV+CVQFG+LS DEIRQMSVVQIE SET GKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL DEDDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRI++PK+RLKK L+A GDEIDVQGQ++ EPVKKSRGGCGAQQP +I
Sbjct: 121 FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKM AEYK +KK DDQEQLPEPVERKQ L+AERVLSVLKRISDED QLLGLNPKY R
Sbjct: 181 EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIE+LKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP PAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L R SAWH + E G +TPGDT V +EKGELL+GTLCKK LGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADAATME IN+TIS AKN+VK LI +AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMMDSFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KKS+FDK F YE+DD++WNPDYM +H+EDL+TIREFRNVFDAEVQKLE DR Q
Sbjct: 901 LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIA TG+ SWPLPVNL RL+ NAQK FKID RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D LS+EAQKNATLFF+ILLRST ASKRVL EYRL+REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P+ +K K+RAKNVQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFV SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+PDKISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
N EAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK++ FD NEGFK
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYM+GLDFG TP RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEGMMSP+YLLSPN RLSP SD QFSPYVGGMAFSP
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISD-AQFSPYVGGMAFSP 1537
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 2746 bits (7119), Expect = 0.0
Identities = 1357/1539 (88%), Positives = 1444/1539 (93%), Gaps = 1/1539 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD RFPYSPAEVAKVQ VQFG+LS DEIRQMSVVQIE +ET ERGKPKPGGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEDD K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQ-DTGEPVKKSRGGCGAQQPSFT 5432
FKQAL+IRNPK+RLK+ +A GD++DVQ Q DT EPVK+ RGGCGAQQP+ T
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179
Query: 5431 IEGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYT 5252
++GMKM+AE+K KKK DDQEQLPEPVERKQ LSAERVL+VLKRISDEDC LLGLNPK+
Sbjct: 180 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 5251 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 5072
RPDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 5071 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 4892
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 4891 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYII 4712
RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 4711 RDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 4532
R+DGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 4531 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQD 4352
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 4351 TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQI 4172
TLLGCRKITKRDT IEKDVFMN LMWWEDFDGKVP PAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599
Query: 4171 NLLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDA 3992
NL+R+SAWH + E GF+TPGDT V +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 3991 ARKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKK 3812
ARKFLGHTQWLVNYWLLQNGFS+GIGDTIADAATME IN+TISTAKN+VK+LI++A +K
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719
Query: 3811 LEAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQM 3632
LEAEPGRTMM+SFENRVNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 3631 TACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 3452
TACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 3451 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 3272
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 3271 NLQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRY 3092
L SLK+KK +FD +FRYE+DD++W P+YM P+H+EDL+TIREFRNVF+AEVQKLEADR+
Sbjct: 900 KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959
Query: 3091 QLATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVV 2912
QL TEIATTG+ +WP+PVNL RL+ NAQK FKID RR S MHPMEIVEA+DKLQE+LKVV
Sbjct: 960 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 2911 PGEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAP 2732
PG+D +S+EAQKNATLFFNILLRST ASKRVLKEYRL++EAF+WVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 2731 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 2552
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 2551 KPDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 2372
KP+++K K+ AKNVQCALEYTTLRSVTHATE+WYDPDP+ TIIEED++FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 2371 ISPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRI 2192
+ PDKISPWLLRIELNREMMVDKKLSMADIA KIN EFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 2191 MNDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFK 2012
NDEAPKGEIQDESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK GK++ F++N+GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319
Query: 2011 TEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1832
+ EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379
Query: 1831 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1652
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 1651 YLRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGT 1472
YLRGVTENIMLGQLAPIGTGGCALYLN+ MLQ AIELQLPSY+EGLDFG TP RSPISGT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499
Query: 1471 PYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
PYHEGMMSPSYLLSPN R SP +D QFSPYVGGMAFSP
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPITD-AQFSPYVGGMAFSP 1537
>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1-like isoform X2
[Glycine max]
Length = 1827
Score = 2745 bits (7115), Expect = 0.0
Identities = 1363/1538 (88%), Positives = 1434/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MDIRFP+SPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRIRNPK+RLKK L+A GDEID+ GQDT E VKKSRGGCGAQQP TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ LSAERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP PAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+RYS+WH + E G +TPGDT V +EKGELL+GTLCKKTLGT G LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA+TMETIN TIS AK VK+LIREA EKKL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGR+MMDSFENRVNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIP+GF RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK++FD++FRYE DD++W P YM + +EDL+TIREFRNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIATTG++S LPVNL RL+ NAQK FK+D RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
GED LS EAQKNATL FNILLRST ASKRVL+EYRLSREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
PD+ K K+RAK+VQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+ +KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGEIQDESAEDDVFLK+IESNMLTEM LRGIPDINKVFIK+ K+ FDEN+GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EWMLDTEGVNLLAVMCHEDVD RTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CALYLN+ ML++AIELQLPSYM+GLDFG TP RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEG+MSPSYLLSPN RLSP++D QFSPYVGGMAFSP
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTTD-AQFSPYVGGMAFSP 1537
>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
arietinum]
Length = 1834
Score = 2742 bits (7109), Expect = 0.0
Identities = 1360/1538 (88%), Positives = 1438/1538 (93%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MDIRFP+SPAEVAKV+ VQFG+LS DEIRQMSVVQIE ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETCTA+MAECPGHFG+LELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE DHK
Sbjct: 61 DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQALRI++PK+RL+K L+A GD+ID+ G DT EPVKKSRGGCGAQQP TI
Sbjct: 121 FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
EGMKMIAEYK +KK DDQEQLPEPVERKQ LSAERVL VLKRISDEDCQLLGLNPKY R
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDW+ILQVL PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNG+PAHIIS
Sbjct: 241 PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQD+
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP P ILKP P+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
L+RYS+WH + E+G +TPGDT V +EKGELL+GTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQN FS+GIGDTIADA+TMETIN TIS AK VK+LIREAQEKKL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMM+SFENRVNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK+KK+DFD+ FRYE DD++W P YM + +EDL+TIREFRNVF+AEVQKL+ADR+Q
Sbjct: 901 LDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
LATEIATTG++S PLPVNL RL+ NAQK FK+D RR S MHPMEIVEA+DKLQE+LKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D LS EAQKNATL FNILLRST ASKRVL+EYRLSREAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P++ K K+RAK+VQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
+ +KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGEIQDESAEDDVFLK+IESNMLTEM LRGI DINKVFIK+ K+ FDENEGFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGFKP 1320
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
EWMLDTEGVNLLAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 YEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPISGTP 1469
LRGVTENIMLGQLAPIGTG CAL LN+ ML++AIELQLPSYMEGLDFG TPGRSPIS TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGRSPISATP 1500
Query: 1468 YHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
YHEG+MSPSYLLSPN RLSP++D QFSPYVGGMAFSP
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTND-AQFSPYVGGMAFSP 1537
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 2741 bits (7105), Expect = 0.0
Identities = 1351/1542 (87%), Positives = 1451/1542 (94%), Gaps = 3/1542 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFPYSPAEVAKV+ VQFG+LS +EIR MSVV+I+ SET ERGKPKP GLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCS+ILADE+DH+
Sbjct: 61 DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDV-QGQDTGEPVKKSR-GGCGAQQPSF 5435
FKQAL+IRNPK RLKK L+ GD+ID Q QD+ E VKK R GGCGAQQP
Sbjct: 121 FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180
Query: 5434 TIEGMKMIAEYKLTKKKGDDQEQ-LPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPK 5258
TIEGMKM+AEYKL +KK D+QEQ LPEPVERKQQL+AE+VL+VLKRI+DEDCQLLGLNPK
Sbjct: 181 TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240
Query: 5257 YTRPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAH 5078
Y RPDWMILQV+ PSVMMDTSSRSEDDLTHQLAM+IRHN+NL+RQE+NGAPAH
Sbjct: 241 YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300
Query: 5077 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 4898
IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360
Query: 4897 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKY 4718
SARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKY
Sbjct: 361 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420
Query: 4717 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMP 4538
IIR+DGQRLDLRYLKKS DHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421 IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480
Query: 4537 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIV 4358
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIV
Sbjct: 481 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540
Query: 4357 QDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPK 4178
QDTLLGCRKITKRDTFIEKDVFMN LMWWEDFDGK+P PAILKPRPLWTGKQVFNLIIPK
Sbjct: 541 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600
Query: 4177 QINLLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGP 3998
QINL+RYSAWH + E GF+TPGDT V +E+GELLSGTLCKKTLGTS GSLIHVIWEEVGP
Sbjct: 601 QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660
Query: 3997 DAARKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQE 3818
DAARKFLGHTQWLVNYWLLQ FS+GIGDTIADAATME IN+TIS AKN+VK+LI+ AQE
Sbjct: 661 DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720
Query: 3817 KKLEAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINIS 3638
K+LEAEPGRTMM+SFENRVNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780
Query: 3637 QMTACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 3458
QMTACVGQQNVEGKRIPFGFN RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781 QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840
Query: 3457 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 3278
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900
Query: 3277 SQNLQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEAD 3098
SQ L SLK+K+++F+ +++YEID ++W+P YM P+H+EDL+TIREF+NVFDAEVQKLEAD
Sbjct: 901 SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960
Query: 3097 RYQLATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLK 2918
R+QL TEI TTG+ SWP+PVNL RL+ NAQK+FK+D RR S MHPMEIVEAVDKLQE+LK
Sbjct: 961 RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020
Query: 2917 VVPGEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLV 2738
VVPG+D +S+EAQKNATLFFNILLRST ASKRVLKEYRL+REAFDWVIGEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080
Query: 2737 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 2558
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140
Query: 2557 YLKPDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPD 2378
YLK +++K K++AKNVQCALEYTTLRSVT ATEVWYDPDPMSTIIEED+DFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200
Query: 2377 EEISPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRI 2198
EE++P+KISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260
Query: 2197 RIMNDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEG 2018
RIMNDEAPKGE+QDES+EDDVFLK+IESNMLTEMALRGIPDINKVFIKSGK++ FDENEG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320
Query: 2017 FKTEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVIS 1838
FK E+EWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVI+VLGIEAVRRALLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380
Query: 1837 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAE 1658
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440
Query: 1657 SDYLRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYMEGLDFGTTPGRSPIS 1478
+D+LRGVTENIMLGQLAPIGTG CALYLN+ MLQ AIELQLPSYMEG+DFG TP RSP++
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT 1500
Query: 1477 GTPYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSPA 1352
GTPYHEGMMSP YLLSPN R SP +D QFSPYVGGMAFSP+
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITD-AQFSPYVGGMAFSPS 1540
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 2741 bits (7105), Expect = 0.0
Identities = 1358/1539 (88%), Positives = 1437/1539 (93%), Gaps = 1/1539 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFP+SPAEVAKV+ VQFG++S DEIRQMSVV IE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADEDD K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQA+RIRNPK+RL+K L+A GDEIDVQGQDT EPVKKSRGGCGAQQP +I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
+GMKM+AEYK+ KKK DD EQ+PEPVERKQQLSAERVLS+LKR+SDEDC LLGLNP++ R
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQ L PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
LLRYSAWH D E+G++TPGDTQV +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQ FS+GIGDTIADA+TME IN+TIS AK VK+LI+ AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMM+SFENRVNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK KK FD ++ YEIDD +WNP YM P+ +EDL+ IRE R+VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIA TG+ SWPLPVN+ RLV NAQK FKID RR S MHPMEIVEAVDKLQE+LKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D+LSMEAQKNATLFFNILLRS LASKRVLKEYRLSREAF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P++ K K+RAK VQCALEYTTLRSVT ATEVWYDPDPMST+IEED++FVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
PDKISPWLLRIELNREMMVDKKLSMADIA KINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK+ K+ FD+NEGFK
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYME-GLDFGTTPGRSPISGT 1472
LRGVTENIMLGQLAPIGTGGC+LYLNE ML+ AIE+ LPSYME GL+FG TPGRSPISGT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 1471 PYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
PYH+GMMSP+YLLSPN R+SP +D QFSPYVGGMAFSP
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITD-AQFSPYVGGMAFSP 1537
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 2736 bits (7091), Expect = 0.0
Identities = 1355/1539 (88%), Positives = 1435/1539 (93%), Gaps = 1/1539 (0%)
Frame = -2
Query: 5968 MDIRFPYSPAEVAKVQCVQFGVLSADEIRQMSVVQIEFSETTERGKPKPGGLSDTRLGTI 5789
MD+RFP+SPAEVAKV+ VQFG++S DEIRQMSVV IE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 5788 DRKQKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHK 5609
DRK KCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADEDD K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 5608 FKQALRIRNPKHRLKKFLEAXXXXXXXXXGDEIDVQGQDTGEPVKKSRGGCGAQQPSFTI 5429
FKQA+RIRNPK+RL+K L+A GDEIDVQG DT EPVKKSRGGCGAQQP +I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 5428 EGMKMIAEYKLTKKKGDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCQLLGLNPKYTR 5249
+GMKM+AEYK+ KKK DD EQ+PEPVERKQQLSAERVLS+LKR+SDEDC LLGLNP++ R
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 5248 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 5069
PDWMILQ L PSVMMDTSSRSEDDLTHQLAMIIRHN+NL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 5068 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 4889
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 4888 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIEKLKELVEYGPHPPPGKTGAKYIIR 4709
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE+LKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 4708 DDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 4529
DDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 4528 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 4349
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 4348 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPLWTGKQVFNLIIPKQIN 4169
LLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 4168 LLRYSAWHQDGEEGFLTPGDTQVLVEKGELLSGTLCKKTLGTSGGSLIHVIWEEVGPDAA 3989
LLRYSAWH D E+G++TPGDTQV +EKGELLSGTLCKKTLGTS GSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3988 RKFLGHTQWLVNYWLLQNGFSMGIGDTIADAATMETINDTISTAKNDVKKLIREAQEKKL 3809
RKFLGHTQWLVNYWLLQ FS+GIGDTIADA+TME IN+TIS AK VK+LI+ AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 3808 EAEPGRTMMDSFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 3629
EAEPGRTMM+SFENRVNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 3628 ACVGQQNVEGKRIPFGFNGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 3449
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 3448 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQN 3269
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 3268 LQSLKIKKSDFDKLFRYEIDDDHWNPDYMQPDHIEDLRTIREFRNVFDAEVQKLEADRYQ 3089
L SLK KK FD ++ YEIDD +WNP YM P+ +EDL+ IRE R+VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3088 LATEIATTGETSWPLPVNLMRLVSNAQKLFKIDKRRRSGMHPMEIVEAVDKLQEKLKVVP 2909
L TEIA TG+ SWPLPVN+ RLV NAQK FKID RR S MHPMEIVEAVDKLQE+LKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2908 GEDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPG 2729
G+D+LSMEAQKNATLFFNILLRS LASKRVLKEYRLSREAF+WV+GEIESRFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 2728 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 2549
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 2548 PDISKAKDRAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 2369
P++ K K+RAK VQCALEYTTLRSVT ATEVWYDPDPMST+IEED++FVKSYYEMPDEEI
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 2368 SPDKISPWLLRIELNREMMVDKKLSMADIAGKINLEFDDDLTCIFNDDNAEKLILRIRIM 2189
PDKISPWLLRIELNREMMVDKKLSMADIA KIN+EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 2188 NDEAPKGEIQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKLSTFDENEGFKT 2009
NDEAPKGE+ DESAEDDVFLK+IESNMLTEMALRGIPDINKVFIK+ K+ FD+NEGFK
Sbjct: 1261 NDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 2008 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1829
E EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1828 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1649
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 1648 LRGVTENIMLGQLAPIGTGGCALYLNENMLQHAIELQLPSYME-GLDFGTTPGRSPISGT 1472
LRGVTENIMLGQLAPIGTG C+LYLNE ML+ AIE+ LPSYME GL+FG TPGRSPISGT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 1471 PYHEGMMSPSYLLSPNYRLSPSSDNLQFSPYVGGMAFSP 1355
PYH+GMMSP+YLLSPN R+SP +D QFSPYVGGMAFSP
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITD-AQFSPYVGGMAFSP 1537