BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00001103
         (2229 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              576   e-161
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   572   e-160
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   572   e-160
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   570   e-160
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   565   e-158
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   564   e-158
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   556   e-155
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   549   e-153
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   548   e-153
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   547   e-153
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   547   e-153
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   540   e-150
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           540   e-150
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   538   e-150
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   523   e-145
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   523   e-145
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   520   e-144
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   518   e-144
ref|XP_004493985.1| PREDICTED: RNA polymerase sigma factor sigF,...   518   e-144
ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Caps...   513   e-142

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  576 bits (1484), Expect = e-161
 Identities = 317/563 (56%), Positives = 391/563 (69%), Gaps = 17/563 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLL 1857
            MEA  N++S    FPPRT  RNSS  SSV M H+Q +  + S P   A   R FPTSVLL
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSS--SSVLMLHDQVAPAVASIPTTIA---RKFPTSVLL 55

Query: 1856 QEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXXXXXX 1680
            QEQRDE R      K+ERT Q  L+++QM    S  E+N++D + ++ NFE+Q       
Sbjct: 56   QEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGL 115

Query: 1679 XXXXXXLTNG-----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSK 1533
                     G           S+  + +N +D    D +                 E++K
Sbjct: 116  WYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAK 175

Query: 1532 PLDIDLDVSVSTRLQNASS----VEEKIVRSTRLQERRAKKRKVSKPKVVL-ESISSRKK 1368
             L  DL+ S S  L   SS    +EEK VRSTRL ERR+KKR+   PKV + E+  SR+ 
Sbjct: 176  LLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAVHENHGSRRA 233

Query: 1367 DVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDR 1188
            +V++K+ EGYD  DPLRLFLWGPETRKLLT +EE +LI QI++L +L ++K+RLQ+   R
Sbjct: 234  EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 293

Query: 1187 EPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQE 1008
            EPT+VEWA A GLSC+VLQSQLH GN  R+KLI ANLRMVVHIAKQY GRGLN QDLLQE
Sbjct: 294  EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 353

Query: 1007 GSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAK 828
            GSMGLM SV KFKP +GCRF SYAYWW+RQ++RKAIFQHSRTIRLPEN+Y+L GKV EAK
Sbjct: 354  GSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAK 413

Query: 827  KSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSG 648
            + +IQ+    PTKEE+A+RVGIT++KLQ LL  TR P+S+ QP W DQDTTFQE+TAD+G
Sbjct: 414  RLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTG 473

Query: 647  IETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERV 468
            IE PD+SV KQ+MRQHVR+LL  L+PKERR+IRLR GIG     +LSEIG +FG SKERV
Sbjct: 474  IEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERV 533

Query: 467  RQLESRAIYKLKQTLSSNGLRAY 399
            RQLE RA++KLKQ LSS+GL +Y
Sbjct: 534  RQLEQRALHKLKQCLSSHGLESY 556


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  572 bits (1474), Expect = e-160
 Identities = 318/567 (56%), Positives = 397/567 (70%), Gaps = 21/567 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNS-------SPSSSVCMFHEQASGTIISTPAAAASMSRH 1878
            MEA RNL+S P  FP RT +++S       S SSSV M +EQ++  + S P +  S++RH
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTS--SVARH 58

Query: 1877 FPTSVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFEQ 1704
            FPTSVLLQEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E 
Sbjct: 59   FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEH 118

Query: 1703 QXXXXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXX 1554
            Q             +  G          S+  +T+  VD   FDAV              
Sbjct: 119  QFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178

Query: 1553 XXXEDSKPLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESIS 1380
               E+ K    +  D+S+++ L      E K VRST+  ERR+KKRKVSKPKV   E+ +
Sbjct: 179  SLAENPKLNGAEFTDISLTSSLGYPLE-EVKTVRSTQFLERRSKKRKVSKPKVTNHETYN 237

Query: 1379 SRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQT 1200
            SRK  V+KKL EG+D+NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ+
Sbjct: 238  SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1199 QFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQD 1020
            QF REPTL+EWA A GLSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   D
Sbjct: 298  QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1019 LLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKV 840
            LLQEGSMGLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +V
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRV 417

Query: 839  LEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEIT 660
            LEAK+ YIQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEIT
Sbjct: 418  LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 477

Query: 659  ADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLS 480
            AD+G+E PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGLS
Sbjct: 478  ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 537

Query: 479  KERVRQLESRAIYKLKQTLSSNGLRAY 399
            KERVRQLESRA+Y+LKQ+L       Y
Sbjct: 538  KERVRQLESRALYRLKQSLGGKASYGY 564


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  572 bits (1473), Expect = e-160
 Identities = 316/572 (55%), Positives = 391/572 (68%), Gaps = 26/572 (4%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSS---------VCMFHEQASGTIISTPAAAASMS 1884
            MEA  N++S    FPPRT  RNSS S +         V M H+Q +  + S P   A   
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIA--- 57

Query: 1883 RHFPTSVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFE 1707
            R FPTSVLLQEQRDE R      K+ERT Q  L+++QM    S  E+N++D + ++ NFE
Sbjct: 58   RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFE 117

Query: 1706 QQXXXXXXXXXXXXXLTNG-----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXX 1560
            +Q                G           S+  + +N +D    D +            
Sbjct: 118  RQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQ 177

Query: 1559 XXXXXEDSKPLDIDLDVSVSTRLQNASS----VEEKIVRSTRLQERRAKKRKVSKPKVVL 1392
                 E++K L  DL+ S S  L   SS    +EEK VRSTRL ERR+KKR+   PKV +
Sbjct: 178  AVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRR--NPKVAV 235

Query: 1391 -ESISSRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLK 1215
             E+  SR+ +V++K+ EGYD  DPLRLFLWGPETRKLLT +EE +LI QI++L +L ++K
Sbjct: 236  HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295

Query: 1214 RRLQTQFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRG 1035
            +RLQ+   REPT+VEWA A GLSC+VLQSQLH GN  R+KLI ANLRMVVHIAKQY GRG
Sbjct: 296  KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355

Query: 1034 LNFQDLLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYT 855
            LN QDLLQEGSMGLM SV KFKP +GCRF SYAYWW+RQ++RKAIFQHSRTIRLPEN+Y+
Sbjct: 356  LNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYS 415

Query: 854  LQGKVLEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTT 675
            L GKV EAK+ +IQ+    PTKEE+A+RVGIT++KLQ LL  TR P+S+ QP W DQDTT
Sbjct: 416  LLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTT 475

Query: 674  FQEITADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGA 495
            FQE+TAD+GIE PD+SV KQ+MRQHVR+LL  L+PKERR+IRLR GIG     +LSEIG 
Sbjct: 476  FQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGL 535

Query: 494  LFGLSKERVRQLESRAIYKLKQTLSSNGLRAY 399
            +FG SKERVRQLE RA++KLKQ LSS+GL +Y
Sbjct: 536  VFGFSKERVRQLEQRALHKLKQCLSSHGLESY 567


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  570 bits (1470), Expect = e-160
 Identities = 317/568 (55%), Positives = 397/568 (69%), Gaps = 22/568 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNS--------SPSSSVCMFHEQASGTIISTPAAAASMSR 1881
            MEA RNL+S P  FP RT +++S        S SS+V M +EQ++  + S P +  S++R
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTS--SVAR 58

Query: 1880 HFPTSVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFE 1707
            HFPTSVLLQEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E
Sbjct: 59   HFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLE 118

Query: 1706 QQXXXXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXX 1557
             Q             +  G          S+  +T+  VD   FDAV             
Sbjct: 119  HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 178

Query: 1556 XXXXEDSKPLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESI 1383
                E+ K    +  D+S+++ L      E K VRST+  ERR+KKRKVSKPKV   E+ 
Sbjct: 179  ASLAENPKLNGAEFTDISLTSSLGYPLE-EVKTVRSTQFLERRSKKRKVSKPKVTNHETY 237

Query: 1382 SSRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQ 1203
            +SRK  V+KKL EG+D+NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ
Sbjct: 238  NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 297

Query: 1202 TQFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQ 1023
            +QF REPTL+EWA A GLSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   
Sbjct: 298  SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 357

Query: 1022 DLLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGK 843
            DLLQEGSMGLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +
Sbjct: 358  DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 417

Query: 842  VLEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEI 663
            VLEAK+ YIQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEI
Sbjct: 418  VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 477

Query: 662  TADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGL 483
            TAD+G+E PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGL
Sbjct: 478  TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 537

Query: 482  SKERVRQLESRAIYKLKQTLSSNGLRAY 399
            SKERVRQLESRA+Y+LKQ+L       Y
Sbjct: 538  SKERVRQLESRALYRLKQSLGGKASYGY 565


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  565 bits (1456), Expect = e-158
 Identities = 319/567 (56%), Positives = 388/567 (68%), Gaps = 21/567 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRN----SSPSSSVCMFHEQASGTIISTPAAAASMSRHFPT 1869
            MEA R+ +S    FP  T LR+    SSPS+SV M HEQA   + S P    S++RHFPT
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPIT--SVARHFPT 58

Query: 1868 SVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDF---LRNFEQQ 1701
            SVLLQEQRDE +  LH  KE++TS+  LDR Q+  G+S  ED   D DDF   + + + Q
Sbjct: 59   SVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDL--DIDDFYPLVNSSKPQ 116

Query: 1700 XXXXXXXXXXXXXLTNG---------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXX 1548
                          T           S+   +   +D    + V                
Sbjct: 117  LLNHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASL 176

Query: 1547 XEDSKPLDIDLDVSVSTRLQNASSVEEKIVRSTRLQERRAKK---RKVSKPKVV-LESIS 1380
             EDS+ +  D D    T L N    EEK VRSTR+ ERR K+   RKV K KV+  ES S
Sbjct: 177  AEDSQSMGADFDDLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNS 236

Query: 1379 SRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQT 1200
                DV KK+ EG++ NDPLRLFLWGPETR+LLT +EE +LI++++DL KL ++K RLQT
Sbjct: 237  FTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQT 296

Query: 1199 QFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQD 1020
            QF REPTL+EWA A G+SC++L+SQL  G S REKLI ANLRMVVHIAKQY GRGL  QD
Sbjct: 297  QFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQD 356

Query: 1019 LLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKV 840
            L+QEGSMGLM+SV KFKPQ+GCRF +YAYWW+RQ++RKAIFQHSRTIRLPENVY+L GKV
Sbjct: 357  LMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKV 416

Query: 839  LEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEIT 660
            LEAKKS IQ+    P KEELA+RVGITV+KL+ LL+ TR P+S+ QP W DQDTTFQE+T
Sbjct: 417  LEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVT 476

Query: 659  ADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLS 480
            AD+G+E PD+SV KQ+MRQHVR LL  L+ +ER +IRLR+GI   KQ SLSEIG +FGLS
Sbjct: 477  ADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLS 536

Query: 479  KERVRQLESRAIYKLKQTLSSNGLRAY 399
            KERVRQLESRA  KL+Q+L S GL AY
Sbjct: 537  KERVRQLESRAFLKLRQSLGSQGLGAY 563


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  564 bits (1453), Expect = e-158
 Identities = 315/564 (55%), Positives = 393/564 (69%), Gaps = 18/564 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAA----SMSRHFPT 1869
            MEA RNL+S P  FP RT +++S  SS+       +S +  S PA A+    S++RHFPT
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSA-------SSSSSSSAPAVASVPTSSVARHFPT 53

Query: 1868 SVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFEQQXX 1695
            SVLLQEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E Q  
Sbjct: 54   SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 113

Query: 1694 XXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXX 1545
                       +  G          S+  +T+  VD   FDAV                 
Sbjct: 114  HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 173

Query: 1544 EDSKPLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESISSRK 1371
            E+ K    +  D+S+++ L      E K VRST+  ERR+KKRKVSKPKV   E+ +SRK
Sbjct: 174  ENPKLNGAEFTDISLTSSLGYPLE-EVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRK 232

Query: 1370 KDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFD 1191
              V+KKL EG+D+NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ+QF 
Sbjct: 233  ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 292

Query: 1190 REPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQ 1011
            REPTL+EWA A GLSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   DLLQ
Sbjct: 293  REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 352

Query: 1010 EGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEA 831
            EGSMGLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +VLEA
Sbjct: 353  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 830  KKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADS 651
            K+ YIQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEITAD+
Sbjct: 413  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 650  GIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKER 471
            G+E PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGLSKER
Sbjct: 473  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 470  VRQLESRAIYKLKQTLSSNGLRAY 399
            VRQLESRA+Y+LKQ+L       Y
Sbjct: 533  VRQLESRALYRLKQSLGGKASYGY 556


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  556 bits (1433), Expect = e-155
 Identities = 314/567 (55%), Positives = 391/567 (68%), Gaps = 21/567 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNS-------SPSSSVCMFHEQASGTIISTPAAAASMSRH 1878
            MEA RNL+S P  FP RT +++S       S SSSV M +EQ++  + S P +  S++RH
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTS--SVARH 58

Query: 1877 FPTSVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFEQ 1704
            FPTSVLLQEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E 
Sbjct: 59   FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEH 118

Query: 1703 QXXXXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXX 1554
            Q             +  G          S+  +T+  VD   FDAV              
Sbjct: 119  QFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178

Query: 1553 XXXEDSKPLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESIS 1380
               E+ K    +  D+S+++ L      E K VRSTR  ERR+KKRKVSKPKV   E+ +
Sbjct: 179  SLAENPKLNGAEFTDISLTSSLGYPLE-EVKTVRSTRFLERRSKKRKVSKPKVTNHETYN 237

Query: 1379 SRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQT 1200
            SRK  V+KKL EG+D NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ+
Sbjct: 238  SRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297

Query: 1199 QFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQD 1020
            QF REPTL+       LSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   D
Sbjct: 298  QFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHD 357

Query: 1019 LLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKV 840
            LLQEGSMGLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +V
Sbjct: 358  LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRV 417

Query: 839  LEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEIT 660
            LEAK+ YIQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEIT
Sbjct: 418  LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEIT 477

Query: 659  ADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLS 480
            AD+G+E PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGLS
Sbjct: 478  ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 537

Query: 479  KERVRQLESRAIYKLKQTLSSNGLRAY 399
            KERVRQLESRA+Y+LKQ+L       Y
Sbjct: 538  KERVRQLESRALYRLKQSLGGKASYGY 564


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  549 bits (1414), Expect = e-153
 Identities = 309/560 (55%), Positives = 386/560 (68%), Gaps = 14/560 (2%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLL 1857
            MEA RNL+S P  FP RT +++S  SS+       +S ++ S P +  S++RHFPTSVLL
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSA----SSSSSSSVASVPTS--SVARHFPTSVLL 54

Query: 1856 QEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFEQQXXXXXX 1683
            QEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E Q      
Sbjct: 55   QEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPD 114

Query: 1682 XXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSK 1533
                   +  G          S+  +T+  VD   FDAV                 E+ K
Sbjct: 115  LWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPK 174

Query: 1532 PLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESISSRKKDVE 1359
                +  D+S+++ L      E K VRSTR  ERR+KKRKVSKPKV   E+ +SRK  V+
Sbjct: 175  LNGAEFTDISLTSSLGYPLE-EVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVK 233

Query: 1358 KKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPT 1179
            KKL EG+D NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ+QF REPT
Sbjct: 234  KKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 293

Query: 1178 LVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSM 999
            L+       LSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   DLLQEGSM
Sbjct: 294  LILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSM 353

Query: 998  GLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSY 819
            GLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +VLEAK+ Y
Sbjct: 354  GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLY 413

Query: 818  IQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIET 639
            IQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEITAD+G+E 
Sbjct: 414  IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEI 473

Query: 638  PDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQL 459
            PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGLSKERVRQL
Sbjct: 474  PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 533

Query: 458  ESRAIYKLKQTLSSNGLRAY 399
            ESRA+Y+LKQ+L       Y
Sbjct: 534  ESRALYRLKQSLGGKASYGY 553


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  548 bits (1412), Expect = e-153
 Identities = 311/564 (55%), Positives = 387/564 (68%), Gaps = 18/564 (3%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAA----SMSRHFPT 1869
            MEA RNL+S P  FP RT +++S  SS+       +S +  S PA A+    S++RHFPT
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSA-------SSSSSSSAPAVASVPTSSVARHFPT 53

Query: 1868 SVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLED-NAEDSDDFLRNFEQQXX 1695
            SVLLQEQRDE R  LH  KE++TSQ   D + M   +  +E+ N+ D D  +++ E Q  
Sbjct: 54   SVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFL 113

Query: 1694 XXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXX 1545
                       +  G          S+  +T+  VD   FDAV                 
Sbjct: 114  HWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLA 173

Query: 1544 EDSKPLDIDL-DVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESISSRK 1371
            E+ K    +  D+S+++ L      E K VRSTR  ERR+KKRKVSKPKV   E+ +SRK
Sbjct: 174  ENPKLNGAEFTDISLTSSLGYPLE-EVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRK 232

Query: 1370 KDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFD 1191
              V+KKL EG+D NDPLRLFLWGPETRKLLT +EE +LI+QI+DL +L   K +LQ+QF 
Sbjct: 233  ASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 292

Query: 1190 REPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQ 1011
            REPTL+       LSCR L+S+LH GNS REKLINANLR+VVH+AKQY GRG+   DLLQ
Sbjct: 293  REPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQ 352

Query: 1010 EGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEA 831
            EGSMGLM+SV KFKPQ+GCRF SYAYWWVRQ+IRKAIFQHSRTIRLPEN+YTL  +VLEA
Sbjct: 353  EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 830  KKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADS 651
            K+ YIQ+    P KE+LA+RVGITV+KL+ L+F+TR P+S+ QP W DQDTTFQEITAD+
Sbjct: 413  KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 650  GIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKER 471
            G+E PD+SV KQ+MRQHVR+LL  L+PKER ++RLR GI   K  SLSE+G +FGLSKER
Sbjct: 473  GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 470  VRQLESRAIYKLKQTLSSNGLRAY 399
            VRQLESRA+Y+LKQ+L       Y
Sbjct: 533  VRQLESRALYRLKQSLGGKASYGY 556


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  547 bits (1410), Expect = e-153
 Identities = 309/557 (55%), Positives = 385/557 (69%), Gaps = 11/557 (1%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRN----SSPSSSVCMFHEQASGTIISTPAAAASMSRHFPT 1869
            MEA R+ +S    FP  T LR+    SSPS+SV M HEQA+  + S P +   ++RHFPT
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSF--ITRHFPT 58

Query: 1868 SVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXX 1692
            SVLLQEQRDE +  LH  KEE+ SQ  LDR Q+   +++ + N +D    +++F Q    
Sbjct: 59   SVLLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFNIDDFYKLVKDFRQ--LH 116

Query: 1691 XXXXXXXXXXLTNGSVVPETQNPV--DQNQFDAVYXXXXXXXXXXXXXXXXEDSKPLDID 1518
                       T  ++   T   V  D    D +                 E SK +   
Sbjct: 117  VTPSQIGENSPTGSALESNTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSKSISAG 176

Query: 1517 LDVSVSTRLQNASSVEEKIVRSTRLQERRAK---KRKVSKPKVV-LESISSRKKDVEKKL 1350
            L+ S S  L      EE+ VRST+L ERR K   KR +   KV   E+ SS   D+ +K 
Sbjct: 177  LNESTSLGL----GWEEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSDLRRKY 232

Query: 1349 KEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVE 1170
            +EG + NDPLRLFLWGPETR+LLTL+EE +LI++++D+ KL  +K RLQ+QF REPTL+E
Sbjct: 233  REGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFGREPTLIE 292

Query: 1169 WAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLM 990
            WA A G+SC++LQSQL  G S REKLI +NLRMVVHIAKQY GRGL  QDLLQEGSMGLM
Sbjct: 293  WAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQEGSMGLM 352

Query: 989  RSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQ 810
            +SV KFKPQ+GCRF +YAYWWVRQ+IRKAIFQHSRTIRLPENVYTL GKVLEAKKSYIQ+
Sbjct: 353  KSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKKSYIQE 412

Query: 809  ERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDM 630
              + P++EELA+RVG++V+KL  LL+ TR P+S+ Q  W DQDTTFQE+TAD+GIE PD+
Sbjct: 413  GNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTADTGIEIPDL 472

Query: 629  SVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLESR 450
            SV KQ+MRQHVR+LL  L  +ER++IRLR+GI   KQ SL+EIG +FGLSKERVRQLESR
Sbjct: 473  SVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGLSKERVRQLESR 532

Query: 449  AIYKLKQTLSSNGLRAY 399
            A  KLK++L S GL AY
Sbjct: 533  AFLKLKESLGSQGLGAY 549


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  547 bits (1409), Expect = e-153
 Identities = 310/569 (54%), Positives = 392/569 (68%), Gaps = 23/569 (4%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNS---SPSSSVCMFHEQASGTIISTPAAAASMSRHFPTS 1866
            MEAARNL+SPP  F  RT L++S   + SSSV MFHEQA+    S P    S++RHFPTS
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPIT--SVARHFPTS 58

Query: 1865 VLLQEQRDESRSS--LHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXX 1695
            VLLQEQRD+ R    LH  KE++      D++Q+  G+S  E+NA ++   L  FE++  
Sbjct: 59   VLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL-GFEKKLL 117

Query: 1694 XXXXXXXXXXXLTNG----------SVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXX 1545
                       L +           SV  +T+  VD    + V                 
Sbjct: 118  QWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLS 177

Query: 1544 EDSKPLDIDLDVSVSTRLQNASSV-------EEKIVRSTRLQERRAKKRKVSKPKVVLES 1386
            ED K   +DLD S+S  L +A+S        E   VRSTR  ER++K+R+V     + E+
Sbjct: 178  EDLK---LDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRET 234

Query: 1385 ISSRKKDVEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRL 1206
             SSR+ DV +KL EG+D NDPLRLFLWGPET++LLT +EE +L +Q+++L +L  +K +L
Sbjct: 235  YSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKL 294

Query: 1205 QTQFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNF 1026
            Q+QF REPTLVEWA A GL C  LQ++LH GNS R+KLI ANLRMVVHIAKQY  RGL+ 
Sbjct: 295  QSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSL 354

Query: 1025 QDLLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQG 846
            QDLLQEGSMGLM+SV +FKPQ GCRF +YAYWW+RQ+IRK+I QHSRT+RLPENV+TL  
Sbjct: 355  QDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLS 414

Query: 845  KVLEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQE 666
            KVL+AKKSYI++    P+KEELA+RVGITV+KL  LLF TR P+S+ Q  W+DQD TFQE
Sbjct: 415  KVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQE 474

Query: 665  ITADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFG 486
            +T D+GIE PD+SV KQ+MRQHVR+LL  LSP+ER +I+LR GI   K+ SLSEIG +FG
Sbjct: 475  VTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFG 534

Query: 485  LSKERVRQLESRAIYKLKQTLSSNGLRAY 399
            LSKERVRQLESRA+YKLKQ L+ +GL AY
Sbjct: 535  LSKERVRQLESRALYKLKQCLNKHGLGAY 563


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  540 bits (1391), Expect = e-150
 Identities = 301/549 (54%), Positives = 371/549 (67%), Gaps = 3/549 (0%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLL 1857
            MEA R L+S    FP RT L+NS  +SSV +  EQA+  + S P    S ++HFPTSVLL
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSL-TSSVLILREQATPAVSSIPTT--STAQHFPTSVLL 57

Query: 1856 QEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDS-DDFLRNFEQQXXXXXX 1683
            QEQRDE R   +  KE+R SQ  LDR++   G+S  E    D  D  + NFE Q      
Sbjct: 58   QEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPA 117

Query: 1682 XXXXXXXLTNGSVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSKPLDIDLDVSV 1503
                            T   +D    + +                 +++     DLD   
Sbjct: 118  YWNL------------TDKLIDVEPTNVINLAKRALSASKHAAFLADNNT----DLDNLA 161

Query: 1502 STRLQNASSVEEKIVRSTRLQERRAKKRKVSKPK-VVLESISSRKKDVEKKLKEGYDQND 1326
            ST   + S  E KIVRS R   R++  R+  K K ++ E+  S+  DV+K+L +G+D ND
Sbjct: 162  STSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPND 221

Query: 1325 PLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVEWAHAAGLS 1146
            PLRLFLWGPET++LLT +EE +LI+QI+DL  L  +K RL++QF REPTLVEWA A GLS
Sbjct: 222  PLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLS 281

Query: 1145 CRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLMRSVHKFKP 966
            C VL+ QLH GN  REKLINANLRMVVHIAK+Y  RGL  QDLLQEG++GLM+S+ KFKP
Sbjct: 282  CHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKP 341

Query: 965  QSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQERKYPTKE 786
            Q+GCRF +YAYWW+RQ+I KAIFQHSRTIRLPENVY L GKV+EAK+SYIQ+    PT E
Sbjct: 342  QAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAE 401

Query: 785  ELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDMSVGKQMMR 606
            E+A+RVGI +DKL+ LL  TRTP+S+ Q  W DQ+TTFQEITAD+ IE PDMSV KQ+MR
Sbjct: 402  EIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMR 461

Query: 605  QHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLESRAIYKLKQT 426
            +H+R LL  LS KERR+IRLR GI   KQ SLSEIG +FGLSKERVRQLESRA+YKLKQ 
Sbjct: 462  KHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQC 521

Query: 425  LSSNGLRAY 399
            + S+GL AY
Sbjct: 522  VGSHGLDAY 530


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  540 bits (1390), Expect = e-150
 Identities = 300/549 (54%), Positives = 371/549 (67%), Gaps = 3/549 (0%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLL 1857
            MEA R L+S    FP RT L+NS  +SSV +  EQA+  + S P    S ++HFPTSVLL
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSL-TSSVLILREQATPAVSSIPTT--STAQHFPTSVLL 57

Query: 1856 QEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDS-DDFLRNFEQQXXXXXX 1683
            QEQRDE R   +  KE+R SQ  LDR++   G+S  E    D  D  + NFE Q      
Sbjct: 58   QEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPA 117

Query: 1682 XXXXXXXLTNGSVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSKPLDIDLDVSV 1503
                            T   +D    + +                 +++     DLD   
Sbjct: 118  YWNL------------TDKLIDVEPTNVINLAKRALSASKHAAFLADNNT----DLDNLA 161

Query: 1502 STRLQNASSVEEKIVRSTRLQERRAKKRKVSKPK-VVLESISSRKKDVEKKLKEGYDQND 1326
            ST   + S  E KIVRS R   R++  R+  K K ++ E+  S+  D++K+L +G+D ND
Sbjct: 162  STSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLSQGFDPND 221

Query: 1325 PLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVEWAHAAGLS 1146
            PLRLFLWGPET++LLT +EE +LI+QI+DL  L  +K RL++QF REPTLVEWA A GLS
Sbjct: 222  PLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLS 281

Query: 1145 CRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLMRSVHKFKP 966
            C VL+ QLH GN  REKLINANLRMVVHIAK+Y  RGL  QDLLQEG++GLM+S+ KFKP
Sbjct: 282  CHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKP 341

Query: 965  QSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQERKYPTKE 786
            Q+GCRF +YAYWW+RQ+I KAIFQHSRTIRLPENVY L GKV+EAK+SYIQ+    PT E
Sbjct: 342  QAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAE 401

Query: 785  ELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDMSVGKQMMR 606
            E+A+RVGI +DKL+ LL  TRTP+S+ Q  W DQ+TTFQEITAD+ IE PDMSV KQ+MR
Sbjct: 402  EIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMR 461

Query: 605  QHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLESRAIYKLKQT 426
            +H+R LL  LS KERR+IRLR GI   KQ SLSEIG +FGLSKERVRQLESRA+YKLKQ 
Sbjct: 462  KHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQC 521

Query: 425  LSSNGLRAY 399
            + S+GL AY
Sbjct: 522  VGSHGLDAY 530


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  538 bits (1385), Expect = e-150
 Identities = 302/557 (54%), Positives = 374/557 (67%), Gaps = 11/557 (1%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSS------VCMFHEQASGTIISTPAAAASMSRHF 1875
            ME AR  +S P PFP RT  +NS  SS       V M HEQA   + S P    S++R+F
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTT--SIARNF 58

Query: 1874 PTSVLLQEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQX 1698
            PTSVLLQEQRDE R  L+  KE++T Q  +D KQM  G+SD E    D  D L       
Sbjct: 59   PTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQL--ILHSN 116

Query: 1697 XXXXXXXXXXXXLTNGSVVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSKPLDID 1518
                         T+  +V E  N +D  +                        K  ++D
Sbjct: 117  LSWSLTMQSITTNTDELMVVEPTNVIDLAR----------KALSASKEAALLAQKCANLD 166

Query: 1517 LDVSVS---TRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVL-ESISSRKKDVEKKL 1350
              VS     T L N S  E K VRSTR  ER++K R+V+K K +  E  SSR+  V+KK+
Sbjct: 167  DTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKI 226

Query: 1349 KEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVE 1170
             EG+D  DPLRLFLWGPET++LLT +EE +LI Q++DL  L ++K + + QF R+PTLVE
Sbjct: 227  NEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVE 286

Query: 1169 WAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLM 990
            WA A GLS  V+QSQLH GN  REKLINANLRMVVHIAKQY GRGL+ QDLLQEGSMGLM
Sbjct: 287  WADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLM 346

Query: 989  RSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQ 810
            +S+ KFKPQ GCRF +YAYWW+RQ++RKAIFQHSRTIRLPENVY   GKV EAK+SYI +
Sbjct: 347  KSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIME 406

Query: 809  ERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDM 630
                PTKEELA+R+GIT  +L+ LL++ R P+S+ Q  W DQ+TTFQEITAD  +E P++
Sbjct: 407  GNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPEL 466

Query: 629  SVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLESR 450
             V KQ+MR+HV SLL  L+P+ER++IRLR+GI   K+ SLSEIG++FGLSKERVRQLESR
Sbjct: 467  CVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESR 526

Query: 449  AIYKLKQTLSSNGLRAY 399
            A+YKLKQ L+S+GL AY
Sbjct: 527  ALYKLKQCLASHGLEAY 543


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  523 bits (1348), Expect = e-145
 Identities = 298/572 (52%), Positives = 375/572 (65%), Gaps = 26/572 (4%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRT-----ILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFP 1872
            ME AR +     PFPPRT      L +SS +SSV M HEQAS T+ S   ++   +++FP
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASW--SSNFSAQNFP 58

Query: 1871 TSVLLQEQRDESRSSLH-TKEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXX 1695
             SVLL EQRDE R  LH +KE++TSQ +L  +QM   +   E+N E++D  + +F +   
Sbjct: 59   ASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLH 118

Query: 1694 XXXXXXXXXXXLTNGSVVP---------ETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXE 1542
                          G V           + +   +  QF+ V                 E
Sbjct: 119  HWPNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVE 178

Query: 1541 DSKPLDIDLDV----SVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVVLESISSR 1374
            D K +  D D       ST L + S    K VRSTRL ERR+K+RKV K KV+ +     
Sbjct: 179  DLKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 238

Query: 1373 KKD-------VEKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLK 1215
            +KD        EKK  E  DQ+DPLRLFLWGPET++LLTLE+E QLISQI+DL +L ++K
Sbjct: 239  RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 298

Query: 1214 RRLQTQFDREPTLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRG 1035
              LQ+QF REPT+ EWA  AGL+CR+LQSQLH GN  REKLI ANLRMVVH+AK Y GRG
Sbjct: 299  TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 358

Query: 1034 LNFQDLLQEGSMGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYT 855
            L+ QDLLQEGSMGLM+SV KF P +G RF +YA+WW+RQ+IRKA+F+HSRTIRLPE V+ 
Sbjct: 359  LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 418

Query: 854  LQGKVLEAKKSYIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTT 675
            L GKV+EAKK YIQ+   +PTKEELA+RVG+TV+K+  LLF  R PIS+ Q  W DQ+TT
Sbjct: 419  LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 478

Query: 674  FQEITADSGIETPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGA 495
            FQEITAD  +E  D++V KQ+MR+HV ++L  L PKERR+IRLR+G    +Q SLSEIG 
Sbjct: 479  FQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGD 538

Query: 494  LFGLSKERVRQLESRAIYKLKQTLSSNGLRAY 399
            +FGLSKERVRQLE RA+YKLK+ L   GL AY
Sbjct: 539  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAY 570


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  523 bits (1348), Expect = e-145
 Identities = 297/559 (53%), Positives = 371/559 (66%), Gaps = 21/559 (3%)
 Frame = -2

Query: 2012 SPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLLQEQRDESR 1833
            SPP P         SS S SV M HEQA+  + S  +++A+  +HFPTSVLLQEQRDE +
Sbjct: 5    SPPFP---------SSSSPSVTMLHEQAAPAVASWSSSSAA--QHFPTSVLLQEQRDEYK 53

Query: 1832 SSLHTKEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXXXXXXXXXXXXL-T 1656
              LH   + T+   L+ +QM   S   + N  + D  + +F QQ               T
Sbjct: 54   PLLHVHNKETT---LNTRQMDMTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPT 110

Query: 1655 NGSVVPETQNPVDQNQF--------DAVYXXXXXXXXXXXXXXXXEDSKPLDIDLDVSV- 1503
             G        PVD +          +A+                  + K ++ID D  + 
Sbjct: 111  RGIAASSILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLP 170

Query: 1502 ----STRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVV-LESISSRKKDV------EK 1356
                ST L N+S  + K+VRSTR+ ERR+K+RK SK K++  ES   RK DV      EK
Sbjct: 171  FGLASTSLANSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEK 230

Query: 1355 KLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTL 1176
            KLKEGYDQNDPLRLFL GPE+R+LLT EEE  LI+Q++DL +  ++K RLQ+Q  REPTL
Sbjct: 231  KLKEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTL 290

Query: 1175 VEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMG 996
             EWA A GLSC  LQ+QLH  N  +EKL +ANLRMVVHIAK Y GRGL+ QDL QEGS G
Sbjct: 291  AEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTG 350

Query: 995  LMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYI 816
            LM+S+ KFKP++GCRF +YAYWW+R +IRKAIF HSRTIRLPEN+YTL GK++EAKKSYI
Sbjct: 351  LMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYI 410

Query: 815  QQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETP 636
            Q+   +PTKEELA+RVGITV+KL NLLF +R PIS+ Q  W+DQDTTFQEITADS IE P
Sbjct: 411  QEGNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIP 470

Query: 635  DMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLE 456
             ++V KQ+MR+HV +LL  LSPKE+ +IRLR GI   K+ +LS+IG +FGL+KERVRQLE
Sbjct: 471  GVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLE 530

Query: 455  SRAIYKLKQTLSSNGLRAY 399
             RA+ KLKQ L S GL AY
Sbjct: 531  CRALSKLKQCLESQGLDAY 549


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  520 bits (1338), Expect = e-144
 Identities = 295/559 (52%), Positives = 370/559 (66%), Gaps = 21/559 (3%)
 Frame = -2

Query: 2012 SPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLLQEQRDESR 1833
            SPP P         SS S SV M HEQA+  + S  +++A+  +HFPTSVLLQEQRDE +
Sbjct: 5    SPPFP---------SSSSPSVTMLHEQAAPAVASWSSSSAA--QHFPTSVLLQEQRDEYK 53

Query: 1832 SSLHTKEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXXXXXXXXXXXXL-T 1656
              LH   + T+   L+ +QM   S   + N  ++D  + +F QQ               T
Sbjct: 54   PFLHVHNKETT---LNTRQMDMTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPT 110

Query: 1655 NGSVVPETQNPVDQNQF--------DAVYXXXXXXXXXXXXXXXXEDSKPLDIDLDVSV- 1503
             G        PVD +          +AV                  + K ++ID D  + 
Sbjct: 111  RGIAASSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLP 170

Query: 1502 ----STRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVV-LESISSRKKDV------EK 1356
                ST L ++S  + K+VRSTR+ ER +K+RK SK K +  ES   RK DV      EK
Sbjct: 171  SGLASTSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEK 230

Query: 1355 KLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTL 1176
            KLKEGYD NDPLRLFL GPE+R+LLT EEE QLI+Q++DL +L ++K RLQTQ  REPTL
Sbjct: 231  KLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTL 290

Query: 1175 VEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMG 996
             EWA A G SC  LQ+QLH  N  +EKL +ANLRMVVHIAK Y GRGL+ QDL QEGS G
Sbjct: 291  AEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTG 350

Query: 995  LMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYI 816
            LM+S+ KFKP++GCRF +YAYWW+R ++RKAIF HSRTIRLPEN+YTL GKV+EAKKSYI
Sbjct: 351  LMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYI 410

Query: 815  QQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETP 636
            Q+   +PTKEELA++VGIT++K+ NLLF +R PIS+ Q  W DQDTTFQEITADS IE P
Sbjct: 411  QEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIP 470

Query: 635  DMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLE 456
            D++V KQ+MR HV +LL  LSPKER +IRLR GI   ++ +LS+IG +FGL+KERVRQLE
Sbjct: 471  DVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLE 530

Query: 455  SRAIYKLKQTLSSNGLRAY 399
            SRA+ KL+Q L S GL AY
Sbjct: 531  SRALLKLRQCLESQGLDAY 549


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  518 bits (1335), Expect = e-144
 Identities = 298/561 (53%), Positives = 372/561 (66%), Gaps = 15/561 (2%)
 Frame = -2

Query: 2036 MEAA-RNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVL 1860
            MEAA RNL+S P  F  +T LRN S  SSV M HE A+  + S P A   + RH P S +
Sbjct: 1    MEAAGRNLLSSPPTFSQKTQLRNCS--SSVLMLHEHAAPVLSSVPHAY--LGRHVPASAI 56

Query: 1859 LQEQRDESRSSLH-TKEERTSQLILDRKQMRFGSSDLEDN-AEDSDDFLRNFEQQXXXXX 1686
              EQ+ E+R  LH  KEE+TS   +DR+ +   SS+LE+N A DS+  +   + Q     
Sbjct: 57   GPEQQFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCP 116

Query: 1685 XXXXXXXXLTNGSVVPETQNP----------VDQNQFDAVYXXXXXXXXXXXXXXXXEDS 1536
                           P + N           ++      V                 EDS
Sbjct: 117  GPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDS 176

Query: 1535 KPLD-IDLDVSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKP-KVVLESISSRKKDV 1362
            K LD  +    +ST L +    E++ VRSTR  ER+++KR   KP + V E+  S + DV
Sbjct: 177  KLLDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDV 236

Query: 1361 EKKLKEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREP 1182
             +K+ E  D NDPLR+FLWGPET++LLT +EE +LI +I+   KL ++K +LQ QF  EP
Sbjct: 237  RRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEP 296

Query: 1181 TLVEWAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGS 1002
            T VEWA AAG++ R L+SQL  G S REKLINANLRMVVHIAKQY GRGLN QDLLQEGS
Sbjct: 297  TSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGS 356

Query: 1001 MGLMRSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKS 822
            MGLM+SV KFKPQ+GCRFP+YAYWW+RQS+RKAIFQHSRTIRLPENVY L  KV +AKK 
Sbjct: 357  MGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKE 416

Query: 821  YIQQERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIE 642
             IQQ  +YPTKE++A   G++V++LQNLL   RTP+S+ Q  W DQDTTFQEITAD+ IE
Sbjct: 417  CIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIE 476

Query: 641  TPDMSVGKQMMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQ 462
             P++SV KQ+MR+H+R LL  LSPKER++IRLR GIG  K  SLSEIG +FGLSKERVRQ
Sbjct: 477  APELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQ 536

Query: 461  LESRAIYKLKQTLSSNGLRAY 399
            LE+RA+YKLKQ L+ +GL AY
Sbjct: 537  LETRALYKLKQNLNKHGLDAY 557


>ref|XP_004493985.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Cicer arietinum]
          Length = 555

 Score =  518 bits (1334), Expect = e-144
 Identities = 295/559 (52%), Positives = 379/559 (67%), Gaps = 19/559 (3%)
 Frame = -2

Query: 2018 LISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLLQEQRDE 1839
            + SP  PFP R +      S SV M  +QA+  + S  ++ A+  ++FPTSVLLQE RDE
Sbjct: 1    MFSPSTPFPSRIL-----HSPSVMMPPDQAAPAVTSWSSSFAA--QYFPTSVLLQEHRDE 53

Query: 1838 SRSSLH-TKEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXXXXXXXXXXXX 1662
             +  LH +KE++TSQ  ++ + M   S   ++N  D D+ + N  +Q             
Sbjct: 54   YKPLLHVSKEDKTSQATMNTRVMDVASVREKNNTGDVDESVHNCMRQLHLRCHLQNLLAS 113

Query: 1661 LTNGS--VVPETQNPVDQNQFDAVYXXXXXXXXXXXXXXXXEDSKPLDIDLDVS------ 1506
                       T  P D  Q++A+                 E+ K +++D +        
Sbjct: 114  SATEDFGTSSSTTQPADGFQWNALSLAKQALSASKQAAAAAEELKLIEVDDNSDDPLPLG 173

Query: 1505 -VSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVV-LESISSRKKDV------EKKL 1350
              ST L ++S  + KIVRSTRL+ERR+K+RKVSK KV+  E   +RK DV      EKKL
Sbjct: 174  LASTSLAHSSLGKNKIVRSTRLKERRSKQRKVSKSKVLDEEKYLTRKFDVQRRLRIEKKL 233

Query: 1349 KEGYDQNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVE 1170
            KEG + NDPLRLFLWGPET++LL LEEE +LI+QI+DL +L +   +LQ+QF REPTL E
Sbjct: 234  KEGLEGNDPLRLFLWGPETKRLLNLEEESKLIAQIQDLLRLKETNIKLQSQFGREPTLAE 293

Query: 1169 WAHAAGLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLM 990
            WA   GLSCR LQ++LH GN  ++KLINANLR+VVHIAK Y GRGL+ QDLLQEGSMGLM
Sbjct: 294  WADGVGLSCRALQARLHCGNRSKDKLINANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLM 353

Query: 989  RSVHKFKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQ 810
            R V KFKP++GCRF +YAYWW+RQ+IR+A+F HS+TIRLPEN YTL GKV EAKKSYI++
Sbjct: 354  RGVEKFKPKAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYTLLGKVTEAKKSYIKE 413

Query: 809  ERKYPTKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDM 630
               +PTKEE+A++VGITVDKL+ LLF  RTP+S+++  W DQDTTFQEITADS IE P++
Sbjct: 414  GNLHPTKEEIARQVGITVDKLEMLLFTARTPLSMERAVWADQDTTFQEITADSAIEIPNV 473

Query: 629  SVGKQMMRQHVRSLLGALSPKERRVIRLRHGI--GYQKQYSLSEIGALFGLSKERVRQLE 456
            SV KQ+MR HVR+LL  L+PKERRVIRLR GI  GY+K  SLS+IG + G+ KERVRQLE
Sbjct: 474  SVAKQLMRSHVRNLLNVLNPKERRVIRLRFGIEDGYEK--SLSDIGKVLGVCKERVRQLE 531

Query: 455  SRAIYKLKQTLSSNGLRAY 399
            S+ + KLKQ L S  L AY
Sbjct: 532  SQGLNKLKQNLVSQQLDAY 550


>ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Capsella rubella]
            gi|482562655|gb|EOA26845.1| hypothetical protein
            CARUB_v10022939mg [Capsella rubella]
          Length = 547

 Score =  513 bits (1320), Expect = e-142
 Identities = 294/552 (53%), Positives = 366/552 (66%), Gaps = 6/552 (1%)
 Frame = -2

Query: 2036 MEAARNLISPPLPFPPRTILRNSSPSSSVCMFHEQASGTIISTPAAAASMSRHFPTSVLL 1857
            MEA RNL+S    F  +T L+N S  S V M HEQ +  ++       S+SRHFP SVL 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKNYSSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPASVLS 60

Query: 1856 QEQRDESRSSLHT-KEERTSQLILDRKQMRFGSSDLEDNAEDSDDFLRNFEQQXXXXXXX 1680
            QE R+ESR   H  +E+RTSQL L+R+Q      +L  + ED       FEQQ       
Sbjct: 61   QEPREESRPLSHAFREDRTSQLTLERRQF----DELVSSREDE-----TFEQQLIQSAGL 111

Query: 1679 XXXXXXL-TNGSVVPETQNPV-DQNQFDAVYXXXXXXXXXXXXXXXXEDSK--PLDIDLD 1512
                    T    +P   +P+ D    D V                 +D++  P D   D
Sbjct: 112  WNLLISPITAEKQLPAAVSPLADAELCDVVALAQKALSASKQAALLADDTEANPSDNSGD 171

Query: 1511 VSVSTRLQNASSVEEKIVRSTRLQERRAKKRKVSKPKVV-LESISSRKKDVEKKLKEGYD 1335
             S+ST    +   E  IVRS RL ERRAK R+  K   V  E    +K + +KK K+G D
Sbjct: 172  -SLSTSSSMSLPEEGTIVRSKRLLERRAKNRRAPKSNDVDNEGYVPQKSNAKKKFKQGVD 230

Query: 1334 QNDPLRLFLWGPETRKLLTLEEECQLISQIEDLQKLMDLKRRLQTQFDREPTLVEWAHAA 1155
             +D L+LFLWGPET++LLT +EE +LIS I+ L KL  +K +L++Q   EPT+ EWA A 
Sbjct: 231  TDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAM 290

Query: 1154 GLSCRVLQSQLHLGNSCREKLINANLRMVVHIAKQYLGRGLNFQDLLQEGSMGLMRSVHK 975
            G+S  VL+S++H G S REKLI ANLR+VVHIAKQY  RGLNFQDLLQEGSMGLM+SV K
Sbjct: 291  GISSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEK 350

Query: 974  FKPQSGCRFPSYAYWWVRQSIRKAIFQHSRTIRLPENVYTLQGKVLEAKKSYIQQERKYP 795
            FKPQSGCRF +YAYWW+RQSIRK+IFQ+SRTIRLPENVY L GKV EA+K+ +Q+    P
Sbjct: 351  FKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRP 410

Query: 794  TKEELAQRVGITVDKLQNLLFLTRTPISLDQPTWMDQDTTFQEITADSGIETPDMSVGKQ 615
            +KE+LA  VG++ +KL  LL+ TRTP+S+ QP W DQDTTFQEIT DSGIE P +SVGKQ
Sbjct: 411  SKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIEIPTISVGKQ 470

Query: 614  MMRQHVRSLLGALSPKERRVIRLRHGIGYQKQYSLSEIGALFGLSKERVRQLESRAIYKL 435
            +MR HVR+LL  LSPKER +I+LR GI   KQ SLSEIG ++GLSKERVRQLESRA+Y+L
Sbjct: 471  LMRNHVRNLLNVLSPKERSIIKLRFGIEGGKQRSLSEIGEIYGLSKERVRQLESRALYRL 530

Query: 434  KQTLSSNGLRAY 399
            KQ +SS+GL AY
Sbjct: 531  KQNMSSHGLHAY 542